Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0023664.1

Orthogroup ID

OG0005230

Physical Location & Seq

Genomic Coordinates Reverse (-)

461 .. 1423

Gene Structure 963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0023664.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atgtccggcggcattgaagacgtcagagcagaagacatcgtggccgttgatacggaatccggggtgaggatcaagacagctgtagggcgaggagggtacgtgagggacgtgtgcttaaggagaatggaaatgcacaccatgatgtgggcgtttaggatgagtggcgattatgggtcacacgctgacgatggctatgacaagaaggcgattcctgagatcaaagggattcactacagggatgtggtggctgataatgtgacgatggcggcgaaaatggaggggattgctggccatccgtttacggggatttgcatgtcgaatgtgacagttggattggctgccaaggcaaagaagcagccgtggagctgtgctgatattgagggggttgcaagcggcgtgacgccgacaccgtgtgatttgctacacggcgatgatccgagtcagggtgatgttgctagtggtggctgtgattttcctgtggatgttgtaccaattgacatggtggagatgaaaagacgtaggtatgatagtaggatgaagtcgcctctttcatctcctagtcgttctaggagtccaagttcgtctgatcaggaccctgcggacaaggatccagctccgagtcgatcatcattgggagggcacgagcttcatcactactattcaacaccgccaaaaccagctgatgatgatgatgataacgtgacgtcagaatcaccatcaacaagtttcgctgggcctgatgcaccttatgacattcatggtggacgatcatcatcaaaaggaaagcccaaaaaatggaagccgaagcggtcaccaccacctcctccttctcctgctgctcctgcgccattgcctcctaagaataatgcaagcgccgctgctgagatgggtactgttggggctcggtttggcttcggttttggttgcgttcttctggccatcatgaacaatcacatgtattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Glyco_hydro_28 Pectate_lyase_3

Protein Analysis

320

Amino Acids

34.1

Weight (kDa)

6.2

Isoelectric Point (pI)

71.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G61490 AT3G61490 AT3G61490 AT3G61490 AT3G61490
fragaria_vesca	FvH4_3g12401 FvH4_7g15040
malus_domestica	MD00G1112000.v1.1 MD01G1069000.v1.1
prunus_persica	Prupe.2G175100_v2.0.a1 Prupe.2G175100_v2.0.a1
pyrus_communis	pycom01g09850
rosa_chinensis	RchiOBHm_Chr1g0357161 RchiOBHm_Chr5g0020281
rosa_laevigata	RLG00000028048
rosa_multiflora	Rmu_sc0005967.1_g000009 Rmu_sc0006896.1_g000016 Rmu_sc0023664.1_g000001
rosa_roxburghii	Rroxscaffold_4G00299030
rosa_rugosa	Rorug01G0254400 Rorug05G0058300
rosa_samantha	Rh1AG268700 Rh1BG236400 Rh1DG263500 Rh5BG148200 Rh5CG159700 Rh5DG147100
rosa_wichuraiana	Rw1G023710 Rw5G013160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	24, 707
AccB7I	CCANNNNNTGG	2 cut(s)	144, 795
AciI	CCGC	7 cut(s)	9, 266, 393, 599, 668, 808, 876
AclWI	GGATC	4 cut(s)	77, 428, 602, 615
AcoI	YGGCCR	3 cut(s)	42, 289, 936
AcyI	GRCGYC	3 cut(s)	21, 401, 704
AdeI	CACNNNGTG	1 cut(s)	413
AfaI	GTAC	3 cut(s)	98, 489, 892
AfiI	CCNNNNNNNGG	5 cut(s)	66, 144, 302, 443, 795
AflII	CTTAAG	1 cut(s)	115
AflIII	ACRYGT	2 cut(s)	108, 954
AgsI	TTSAA	2 cut(s)	17, 663
AjiI	CACGTC	1 cut(s)	109
AloI	GAACNNNNNNTCC	2 cut(s)	562, 594
AluBI	AGCT	5 cut(s)	80, 366, 614, 646, 680
AluI	AGCT	5 cut(s)	80, 366, 614, 646, 680
AlwI	GGATC	4 cut(s)	77, 428, 602, 615
AoxI	GGCC	4 cut(s)	42, 289, 734, 936
ApeKI	GCWGC	4 cut(s)	338, 355, 836, 878
AspLEI	GCGC	2 cut(s)	847, 875
AspS9I	GGNCC	2 cut(s)	592, 734
AsuC2I	CCSGG	1 cut(s)	61
AsuHPI	GGTGA	4 cut(s)	76, 458, 705, 804
AvaII	GGWCC	1 cut(s)	592
BaeGI	GKGCMC	1 cut(s)	642
BalI	TGGCCA	2 cut(s)	291, 938
BamHI	GGATCC	1 cut(s)	607
BanII	GRGCYC	1 cut(s)	904
BauI	CACGAG	1 cut(s)	641
BbsI	GAAGAC	2 cut(s)	24, 39
BbvI	GCAGC	4 cut(s)	325, 367, 823, 865
BccI	CCATC	6 cut(s)	182, 256, 300, 724, 880, 947
BceAI	ACGGC	3 cut(s)	29, 343, 442
BclI	TGATCA	1 cut(s)	586
BcnI	CCSGG	1 cut(s)	61
BfaI	CTAG	3 cut(s)	456, 558, 567
BfmI	CTRYAG	2 cut(s)	81, 232
BfoI	RGCGCY	1 cut(s)	876
BfrI	CTTAAG	1 cut(s)	115
BisI	GCNGC	8 cut(s)	10, 267, 339, 356, 394, 837, 876, 879
BlsI	GCNGC	8 cut(s)	11, 268, 340, 357, 395, 838, 877, 880
Bme1390I	CCNGG	1 cut(s)	61
Bme18I	GGWCC	1 cut(s)	592
BmgBI	CACGTC	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	592, 734
BmiI	GGNNCC	2 cut(s)	594, 609
BmrFI	CCNGG	1 cut(s)	61
BmsI	GCATC	1 cut(s)	730
BpiI	GAAGAC	2 cut(s)	24, 39
BpuMI	CCSGG	1 cut(s)	61
BsaAI	YACGTR	1 cut(s)	100
BsaBI	GATNNNNATC	1 cut(s)	772
BsaHI	GRCGYC	3 cut(s)	21, 401, 704
BsaJI	CCNNGG	3 cut(s)	60, 342, 359
BsaXI	ACNNNNNCTCC	4 cut(s)	84, 114, 562, 592
Bsc4I	CCNNNNNNNGG	5 cut(s)	66, 144, 302, 443, 795
Bse3DI	GCAATG	1 cut(s)	848
Bse8I	GATNNNNATC	1 cut(s)	772
BseDI	CCNNGG	3 cut(s)	60, 342, 359
BseGI	GGATG	5 cut(s)	162, 244, 292, 487, 540
BseJI	GATNNNNATC	1 cut(s)	772
BseLI	CCNNNNNNNGG	5 cut(s)	66, 144, 302, 443, 795
BseMI	GCAATG	1 cut(s)	848
BseMII	CTCAG	2 cut(s)	204, 873
BseRI	GAGGAG	2 cut(s)	105, 813
BseSI	GKGCMC	1 cut(s)	642
BseXI	GCAGC	4 cut(s)	325, 367, 823, 865
BseYI	CCCAGC	1 cut(s)	731
BshFI	GGCC	4 cut(s)	44, 291, 736, 938
BsiSI	CCGG	2 cut(s)	6, 60
BslFI	GGGAC	1 cut(s)	119
BslI	CCNNNNNNNGG	5 cut(s)	66, 144, 302, 443, 795
BsmFI	GGGAC	1 cut(s)	119
BsnI	GGCC	4 cut(s)	44, 291, 736, 938
Bsp1286I	GDGCHC	2 cut(s)	642, 904
Bsp143I	GATC	7 cut(s)	69, 216, 433, 586, 607, 623, 767
BspACI	CCGC	7 cut(s)	9, 266, 393, 599, 668, 808, 876
BspANI	GGCC	4 cut(s)	44, 291, 736, 938
BspCNI	CTCAG	2 cut(s)	205, 874
BspHI	TCATGA	1 cut(s)	942
BspLI	GGNNCC	2 cut(s)	594, 609
BspPI	GGATC	4 cut(s)	77, 428, 602, 615
BspTI	CTTAAG	1 cut(s)	115
BsrDI	GCAATG	1 cut(s)	848
BssECI	CCNNGG	3 cut(s)	60, 342, 359
BssMI	GATC	7 cut(s)	69, 216, 433, 586, 607, 623, 767
BssNI	GRCGYC	3 cut(s)	21, 401, 704
BssSI	CACGAG	1 cut(s)	641
BssT1I	CCWWGG	1 cut(s)	342
Bst2BI	CACGAG	1 cut(s)	641
Bst4CI	ACNGT	3 cut(s)	328, 411, 895
BstACI	GRCGYC	3 cut(s)	21, 401, 704
BstAFI	CTTAAG	1 cut(s)	115
BstBAI	YACGTR	1 cut(s)	100
BstC8I	GCNNGC	3 cut(s)	289, 391, 871
BstDEI	CTNAG	3 cut(s)	213, 858, 882
BstDSI	CCRYGG	1 cut(s)	359
BstEII	GGTNACC	1 cut(s)	810
BstF5I	GGATG	5 cut(s)	162, 244, 292, 487, 540
BstH2I	RGCGCY	1 cut(s)	876
BstHHI	GCGC	2 cut(s)	847, 875
BstKTI	GATC	7 cut(s)	72, 219, 436, 589, 610, 626, 770
BstMBI	GATC	7 cut(s)	69, 216, 433, 586, 607, 623, 767
BstMWI	GCNNNNNNNGC	3 cut(s)	344, 842, 875
BstNSI	RCATGY	2 cut(s)	316, 958
BstPI	GGTNACC	1 cut(s)	810
BstSCI	CCNGG	1 cut(s)	59
BstSFI	CTRYAG	2 cut(s)	81, 232
BstSLI	GKGCMC	1 cut(s)	642
BstV1I	GCAGC	4 cut(s)	325, 367, 823, 865
BstV2I	GAAGAC	2 cut(s)	24, 39
BstX2I	RGATCY	1 cut(s)	607
BstYI	RGATCY	1 cut(s)	607
BsuRI	GGCC	4 cut(s)	44, 291, 736, 938
BtgI	CCRYGG	1 cut(s)	359
BtgZI	GCGATG	1 cut(s)	444
BtrI	CACGTC	1 cut(s)	109
BtsCI	GGATG	5 cut(s)	162, 244, 292, 487, 540
Cac8I	GCNNGC	3 cut(s)	289, 391, 871
CciI	TCATGA	1 cut(s)	942
CfoI	GCGC	2 cut(s)	847, 875
Cfr13I	GGNCC	2 cut(s)	592, 734
CseI	GACGC	1 cut(s)	409
Csp6I	GTAC	3 cut(s)	97, 488, 891
CviAII	CATG	6 cut(s)	139, 313, 499, 758, 943, 955
CviQI	GTAC	3 cut(s)	97, 488, 891
DdeI	CTNAG	3 cut(s)	213, 858, 882
DpnI	GATC	7 cut(s)	71, 218, 435, 588, 609, 625, 769
DpnII	GATC	7 cut(s)	69, 216, 433, 586, 607, 623, 767
DraIII	CACNNNGTG	1 cut(s)	413
EaeI	YGGCCR	3 cut(s)	42, 289, 936
Eco130I	CCWWGG	1 cut(s)	342
Eco24I	GRGCYC	1 cut(s)	904
Eco47I	GGWCC	1 cut(s)	592
Eco91I	GGTNACC	1 cut(s)	810
EcoO109I	RGGNCCY	1 cut(s)	592
EcoO65I	GGTNACC	1 cut(s)	810
EcoT14I	CCWWGG	1 cut(s)	342
EcoT38I	GRGCYC	1 cut(s)	904
ErhI	CCWWGG	1 cut(s)	342
FaeI	CATG	6 cut(s)	142, 316, 502, 761, 946, 958
FaqI	GGGAC	1 cut(s)	119
FatI	CATG	6 cut(s)	138, 312, 498, 757, 942, 954
FbaI	TGATCA	1 cut(s)	586
Fnu4HI	GCNGC	8 cut(s)	10, 267, 339, 356, 394, 837, 876, 879
FokI	GGATG	5 cut(s)	169, 251, 279, 494, 547
FriOI	GRGCYC	1 cut(s)	904
Fsp4HI	GCNGC	8 cut(s)	10, 267, 339, 356, 394, 837, 876, 879
FspBI	CTAG	3 cut(s)	456, 558, 567
GlaI	GCGC	2 cut(s)	846, 874
GluI	GCNGC	8 cut(s)	10, 267, 339, 356, 394, 837, 876, 879
GsaI	CCCAGC	1 cut(s)	735
HaeII	RGCGCY	1 cut(s)	876
HaeIII	GGCC	4 cut(s)	44, 291, 736, 938
HapII	CCGG	2 cut(s)	6, 60
HgaI	GACGC	1 cut(s)	409
HhaI	GCGC	2 cut(s)	847, 875
Hin1I	GRCGYC	3 cut(s)	21, 401, 704
Hin1II	CATG	6 cut(s)	142, 316, 502, 761, 946, 958
Hin6I	GCGC	2 cut(s)	845, 873
HinP1I	GCGC	2 cut(s)	845, 873
HinfI	GANTC	7 cut(s)	56, 208, 226, 439, 571, 619, 710
HpaII	CCGG	2 cut(s)	6, 60
HphI	GGTGA	4 cut(s)	76, 458, 705, 804
Hpy166II	GTNNAC	2 cut(s)	300, 764
Hpy188I	TCNGA	5 cut(s)	26, 438, 586, 618, 709
Hpy188III	TCNNGA	4 cut(s)	73, 212, 590, 943
Hpy8I	GTNNAC	2 cut(s)	300, 764
HpyAV	CCTTC	2 cut(s)	196, 837
HpyCH4III	ACNGT	3 cut(s)	328, 411, 895
HpyCH4IV	ACGT	6 cut(s)	21, 99, 108, 517, 699, 704
HpyCH4V	TGCA	5 cut(s)	133, 312, 389, 743, 869
HpyF10VI	GCNNNNNNNGC	3 cut(s)	344, 842, 875
HpyF3I	CTNAG	3 cut(s)	213, 858, 882
HpySE526I	ACGT	6 cut(s)	21, 99, 108, 517, 699, 704
Hsp92I	GRCGYC	3 cut(s)	21, 401, 704
Hsp92II	CATG	6 cut(s)	142, 316, 502, 761, 946, 958
HspAI	GCGC	2 cut(s)	845, 873
Ksp22I	TGATCA	1 cut(s)	586
Kzo9I	GATC	7 cut(s)	69, 216, 433, 586, 607, 623, 767
LmnI	GCTCC	3 cut(s)	363, 619, 844
Lsp1109I	GCAGC	4 cut(s)	325, 367, 823, 865
LweI	GCATC	1 cut(s)	730
MaeI	CTAG	3 cut(s)	456, 558, 567
MaeII	ACGT	6 cut(s)	21, 99, 108, 517, 699, 704
MaeIII	GTNAC	6 cut(s)	174, 256, 322, 397, 700, 810
MalI	GATC	7 cut(s)	71, 218, 435, 588, 609, 625, 769
MboI	GATC	7 cut(s)	69, 216, 433, 586, 607, 623, 767
MboII	GAAGA	3 cut(s)	29, 44, 923
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	1 cut(s)	607
MhlI	GDGCHC	2 cut(s)	642, 904
MlsI	TGGCCA	2 cut(s)	291, 938
MluCI	AATT	1 cut(s)	492
MluNI	TGGCCA	2 cut(s)	291, 938
MlyI	GAGTC	3 cut(s)	448, 580, 628
MmeI	TCCRAC	1 cut(s)	310
Mox20I	TGGCCA	2 cut(s)	291, 938
MscI	TGGCCA	2 cut(s)	291, 938
MseI	TTAA	2 cut(s)	116, 961
MslI	CAYNNNNRTG	2 cut(s)	140, 429
Msp20I	TGGCCA	2 cut(s)	291, 938
MspA1I	CMGCKG	3 cut(s)	80, 680, 878
MspCI	CTTAAG	1 cut(s)	115
MspI	CCGG	2 cut(s)	6, 60
MspR9I	CCNGG	1 cut(s)	61
MunI	CAATTG	1 cut(s)	492
MwoI	GCNNNNNNNGC	3 cut(s)	344, 842, 875
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	7 cut(s)	69, 216, 433, 586, 607, 623, 767
NlaIII	CATG	6 cut(s)	142, 316, 502, 761, 946, 958
NlaIV	GGNNCC	2 cut(s)	594, 609
NmuCI	GTSAC	6 cut(s)	174, 256, 322, 397, 700, 810
NspI	RCATGY	2 cut(s)	316, 958
PagI	TCATGA	1 cut(s)	942
PciI	ACATGT	1 cut(s)	954
PcsI	WCGNNNNNNNCGW	3 cut(s)	105, 266, 407
PfeI	GAWTC	4 cut(s)	56, 208, 226, 710
PflMI	CCANNNNNTGG	2 cut(s)	144, 795
PkrI	GCNGC	8 cut(s)	11, 268, 340, 357, 395, 838, 877, 880
PleI	GAGTC	3 cut(s)	447, 579, 627
PpsI	GAGTC	3 cut(s)	447, 579, 627
Ppu21I	YACGTR	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	592
PscI	ACATGT	1 cut(s)	954
Psp5II	RGGWCCY	1 cut(s)	592
PspEI	GGTNACC	1 cut(s)	810
PspFI	CCCAGC	1 cut(s)	731
PspN4I	GGNNCC	2 cut(s)	594, 609
PspPI	GGNCC	2 cut(s)	592, 734
PspPPI	RGGWCCY	1 cut(s)	592
PsuI	RGATCY	1 cut(s)	607
PvuII	CAGCTG	2 cut(s)	80, 680
RsaI	GTAC	3 cut(s)	98, 489, 892
RsaNI	GTAC	3 cut(s)	97, 488, 891
RseI	CAYNNNNRTG	2 cut(s)	140, 429
SaqAI	TTAA	2 cut(s)	116, 961
SatI	GCNGC	8 cut(s)	10, 267, 339, 356, 394, 837, 876, 879
Sau3AI	GATC	7 cut(s)	69, 216, 433, 586, 607, 623, 767
Sau96I	GGNCC	2 cut(s)	592, 734
SchI	GAGTC	3 cut(s)	448, 580, 628
ScrFI	CCNGG	1 cut(s)	61
SduI	GDGCHC	2 cut(s)	642, 904
SfaNI	GCATC	1 cut(s)	730
SfcI	CTRYAG	2 cut(s)	81, 232
SinI	GGWCC	1 cut(s)	592
SmiMI	CAYNNNNRTG	2 cut(s)	140, 429
SmlI	CTYRAG	1 cut(s)	115
SmoI	CTYRAG	1 cut(s)	115
Sse9I	AATT	1 cut(s)	492
SsiI	CCGC	7 cut(s)	9, 266, 393, 599, 668, 808, 876
SspMI	CTAG	3 cut(s)	456, 558, 567
StyD4I	CCNGG	1 cut(s)	59
StyI	CCWWGG	1 cut(s)	342
TaaI	ACNGT	3 cut(s)	328, 411, 895
TaiI	ACGT	6 cut(s)	24, 102, 111, 520, 702, 707
TaqI	TCGA	2 cut(s)	317, 622
TasI	AATT	1 cut(s)	492
TauI	GCSGC	4 cut(s)	12, 269, 396, 878
TfiI	GAWTC	4 cut(s)	56, 208, 226, 710
Tru1I	TTAA	2 cut(s)	116, 961
Tru9I	TTAA	2 cut(s)	116, 961
TseFI	GTSAC	6 cut(s)	174, 256, 322, 397, 700, 810
TseI	GCWGC	4 cut(s)	338, 355, 836, 878
Tsp45I	GTSAC	6 cut(s)	174, 256, 322, 397, 700, 810
TspDTI	ATGAA	6 cut(s)	524, 540, 551, 638, 746, 959
TspGWI	ACGGA	2 cut(s)	68, 285
Van91I	CCANNNNNTGG	2 cut(s)	144, 795
Vha464I	CTTAAG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	592
XceI	RCATGY	2 cut(s)	316, 958
XspI	CTAG	3 cut(s)	456, 558, 567
ZraI	GACGTC	2 cut(s)	22, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.