FvH4_7g16420

Clustered mitochondria protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0007431
Physical Location & Seq
Forward (+)
14066234 .. 14078939
12706 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16420.t2

Sequence Viewer

Length: 5541 bp
ATGGCACCCAGAAACAGTCGTGGAAAGGGCAAAGGTGGAGAGAAGAAGAAGAAGGAAGAGAAGGTTCTTCCTGTTGTGATGGACATCACCGTGAACCTTCCGGATGAAAGTAGTGTTGTTTTGAAGGGAATATCGACGGACAAGATCATTGACGTCCGCCAACTATTATCAGTGAATACCGAAACTTGTAACATCACCAATTTTTCACTATCCCATGAGGTAAGAGGGAAACGTTTAAAAGATACGGTGGACGTCTCCGCACTCAAGCCCTGCGTCATCACTTTGGTCGAAGAGGACTATGATGAAGAGCGCGCCACCGCGCACGTGCGCCGCGTGCTGGACATCGTCGCCTGCACGACGAGCTTCGGCGCGTCACCTCCGCCGGCGAAGGATCAAAGCCTCAAGCCCGACGCCTCTCCCGCAGTCGTCTCCGGTAAAAATGCTCCGGATAAGGCCGCCAAGAAATCCGCCGCCGCGGTCAAGCCTCAAGTCTCTGCCGGAGCCGATAAGCGTGACGTGGCGGTGGACTCGGACGCCGAGCTGAGCCACTCTTGCCTCAAGCTCGGCTCTTTCTACGACTTCTTCTCTCTCGCTCATCTCACTCCCCCTCTGCAATTTATCAGAAGGGTGACGAAACGACATGTCGATGAGATTTCGGCAGAAGATCACCTGTATTCTCTTGAAGTGAAGCTTTGCAATGGGAAGGTGGTTCTGGTTGAAGCTTGCAGGAAGGGATTCTATAGTGTAGGGAAGCAGCGCATTCTGTGTCACAACCTCGTCGATTTGCTACGGCAGCTGAGTAGAGCTTTCGACAATGCTTATGATGATCTGATGAAAGCATTTTCGGAACGTAATAAGTTTGGGAATCTTCCCTATGGCTTTCGAGCAAACACATGGCTTGTACCGCCAGTTGCAGGTCAGTCACCTTCAGGTTTCCCTGCTCTCCCTGTGGAGGATGAAGCTTGGGGAGGAAATGGAGGGGGTCTAGGAAGAGACGGGAAATTTGATCTGATTCCTTGGGCTAATGAGTTTTGGTATATTGCATCAATGCCTTGCAAGACGGCGGAGGACAGGCAGGTTCGAGATAGGAAGGCATTCCTTCTTCACAGCCTATTTGTCGACGTTTCCATTTTTAGAGCCATTAAAGCTGTGCAGCATGTGATGGCAAAACCGGATTTGACTTGTTCTGCTGCAAGCAGTGATGTTCTTTATACTGAGAGAGTAGGGGACCTGAATGTGACTGTAACAAAGGATGTTAACAATGCAAGCTGTAAGGTTGATACTAAGATTGATGGAATTCAGGCGACTGGAGTGGATAAAAAGAATCTAGCGCAGCGAAACCTTCTGAAAGGGATCACTGCTGACGAGAACACCGCTGCACATGATGTCACCACTCTAGGTGTTGTGAATGTCCGATACTGTGGTTACATTGCAGTTGTGAAAGTTGAGGGGAAAGAAACCAAGAAAATCAGTTCTCCATCACAAACCATTGACCTCCTTGATCAACCTGAAGGTGGTGCCAATGCCCTTAATATCAACAGTTTGAGATTGCTACTTCACACAACTACACCTTCGGAGCAGAATAAACTCGCATTACATGGGCAAGGTCTGGAACATGAAGAGCTTTCTGCTTCCTGCGCTTTTGTTGAGAAACTGTTAGAAGAAAGTCTTGCTAAGCTTGACAAAGAGGAGCTAGATTCTGATAGTTTTGTGAGATGGGAACTAGGAGCTTGCTGGATACAACACTTGCAAGACCAGAAAAATACAGACAAGGATAAGAAACCATCAGGTGAGAAGGCTAAGAATGAGATGAAGGTCGAGGGACTTGGGACACCTCTTAGATCCCTTAAGAACACAAAGAAGAAATCAGAGGGAGCCAATACCAAAGGCCAGTCTGATAGCTCAAAGTCGCATGCAGATGGTGTTGTGGGGGAAGTAGAAAATGCTATAGGTTCTGTGGACTCAAAGTATGAAACCAGTGCTAAGGAAAATGAGCTTGTGCTGACAGAGATGCTGTCTGATGCAGCCTTTGCTCGACTAAAAGAATCAGAAACTGGACTGCATTGCAAGTCTCTGCAAGAACTGATCGACTTATCTCAGAAGTATTACTCTGAAGTTGCTCTTCCAAAACTGGTAGCTGATTTTGGTTCGTTGGAACTTTCACCAGTTGATGGTCGAACCTTGACTGATTTCATGCATACTAGAGGTCTTCAGATGCGTTCTTTGGGGCAAGTTGTCAAGCTGTCAGAGAAGCTATCGCATGTGCAGTCCCTTTGTATTCATGAGATGATAGTCCGAGCTTTTAAGCATATACTTCAGGCAGTGATCGCTGCTGTTAATAACACTGAGAAATTGGCTGTCTCGATTGCTGCTGCATTGAATCTTATGTTGGGGGCTCCAGAGAGTGAAGAATTCAACAAGTCTTGCAACGTACATTCCCTTGTGTGGAGATGGCTGGATGTATTCTTGCGGAAGAGATATGGATGGGATGTTAGCAGCTTCAACTACAATGACGTGAGGCGATTTGCGATTCTACGTGGACTGTGTCATAAGGTGGGAATTGAGATTGTTCCACGTGATTTCGATATGGAGTCTCCAAATCCATTTCGAAGTTCTGATATTGTCAGCTTAGTTCCAGTACATAAGCAAGCTGCATGCTCTTCAGCAGATGGTAGGCAACTACTGGAGTCATCAAAAACAGCCTTAGATAAAGGAAAACTAGAAGATGCGGTTGCATATGGCACTAAGGCTCTTGCAAAGCTGGTAGCAGTTTGTGGTCCATACCATCGAATGACAGCAGGAGCTTACAGCCTCCTTGCTGTAGTTTTGTATCACACTGGAGATTTTAATCAGGCTACAATTTATCAGCAAAAAGCTCTGGATATCAATGAGAGAGAATTAGGGCTTGACCATCCAGACACCATGAAGAGTTATGGTGACCTTGCTGTGTTTTATTACAGACTTCAACATACAGAGTTGGCTCTCAAATATGTAAAACGTGCTCTATATCTCTTGCATCTCACATGTGGACCATCTCATCCAAATACCGCCGCAACATACATCAATGTGGCTATGATGGAAGAAGGCTTGGGGAATGTACATGTTGCCCTCAGATATTTACACAAGGCTTTGAAGTGTAATCAGAAGTTACTTGGCCCAGACCATATTCAGACAGCGGCTAGTTACCACGCTATTGCAATTGCACTGTCATTGATGGAAGCATACCCTTTAAGTGTTCAGCATGAGCAGACAACATTGCAAATTCTGAGAGCAAAGCTTGGACCAGATGATCTCCGTACACAAGATGCTGCTGCCTGGCTTGAGTATTTTGAATCCAAGGCTTTTGAACAGCAGGAAGCTGCAAGAAATGGGACTCGAAAACCAGACGCATCTATAGCCAGCAAAGGCCACTTAAGTGTATCAGATTTGCTTGACTACATCAACCCCACTCATGATGCTAAAGGGAGAGATGTGGCAATGAAGAGGAAAACCTACATAACAAAGTTGAAGGAAAAATCCTATCAAACTATCTCCTCAGCAAGTTCTGAAGACCCTTCAAAAGAAACCACAAAAGATGTTTCAGACGAAGAAACACATACACTTGAACCAATAGAAAGAACAGATCCCATCCAAGAAAACATCTCTGCTTCAGTTGAACCCCAGCATGTTGTGGAAGAGATTCCTGAGGAAAGTTCAAATATGAGCTCATCCAAAATACATGTTGAAGGGGAAGATGACTGGCAACCAGTTCAAAGGCCTAGATCAGTGGGTTCATATGGGCAGCGTGTAAAACAGCGGCGGGCAGCTATTGGGAAGGTCTATAGTTACCAGAAGAAATATGTAGATACTGACACGGATTACCCTTCAGTGAAGAATACTAACCAAAACAGTAGGTATTACCTTCTCAAGAAAAGGCCAACATCTCATGCAAGTTATACAGAAAATCAGATTGCAAATCCCTCCCAAGGTACTAAATTTGGACGGAGAATTGTAAAAGCCGTAGCATACAGAGTCAAGTCTGTGCCTTCGTCTACTAAGGTCACTGCAGCAGAAAGTTTGAGTTCCAAATCAGAAAGTCCAATTGTTTCACCGCATGGTGGTGCAGTAAAAAGTTCTATAGTCAGTCTTGGAAAATCTCCTTCATACAAGGAAGTAGCATTGGCTCCACCAGGTAGTATTGCTAAAATGCAAACTGTTTTCCCACAGAATGACATTCCAGATAACCATGAGCATGGTATCCAAACACAAGAAGAGGAAATAATTGAAATCAAAGGAGATTCCCAAAGCAATCTGGTTGTCAAAACTACACTCGAAGAAAAGAAGGATCCTGTATTTGATGCCTTACGAGAGCAAACTGGACCTGCTGAGAAGAAAGAAGATATTAGTTCACCTGAAGGGAGGGAAGATAACACTTCATTGATATTCGGGACCGTGGATGAACTTGGGTCCAGTTCTGTTAAGTTTCAAGAAGCAGCCGTGGATAAAGAATTAGTAGATGGACTGCCAAAATCCATTGATTCTGTGAAGGAGGGACTCTCTGAGAACAATCCATCTGACAATTCTGAATTGCATGATTCCAACTCCACTTTGCAAGGAGTAGATGATTTGGAGGCATCCTCGCTCGCAACTTCAGTTGATACTCGAGGATTGCCAAATAAAAAATTATCTGCTTCGGCAGCTCCATTCAATCCCTCACCATCCATTCGTGCTGCTCCGGTTCCCATGAACATTGCTATACCCTCTGGTCCGGGATCTATCCCAACTATTGCACCTTGGCCAGTAAACCTGAATATTCACCCAGGAGCTGCTGCTGTCTTGCCCACGGGTAATCCCATGTGCTCCTCTCCTCATCATGCATACCCTTCTCCCCCTACTACCCCAAACATCATACAGCCATTGCCATTTATGTTCCCTCCTTACAGTCAACCCCAAGTTGTACGAACCAGTACCTATCCTGTGACTAGTGCGTTTCATCCGAACCATTTCGCGTGGCAGTGCAACGTGAACCCTAATGTGTCCGAGTTTGTACCTACAACAGTTTGGCATGGTTGCCACCCAATGGAATTCTCTGCCCCAGCACCTGTTGTTGAGCCTATTTCTGATCCCCCTCCTCTGGAGTCAAGAATTCAGAATGATGATTCTGCTCCAGTTCTGCCAGTGGACATCGATAATGTGGGGGAAAGTAAGAATGAAGCAGGTATTCTAACATCAGAGGCAACATGTAATTCAATTGAAAGTGTCAAGGAAGTTGGTCCAGATCTTTGTGGGGATGAAAATGCTCAAACAGAACCATGTGACAGCCCCAATGGAAAAGTTGGAAATAGTGCTGAAAGGACTAGTGATGGAGAGAAAACCTTCACCATTTTGATAAGGGGCAGAAGAAACCGCAAGCAGACTCTGAGAATGCCAGTAAGTTTGCTGAGTCGACCATATGGCTCACAGTCCTTCAAAGTGATATATAACAGGGTGGTCAGGGGGAATGATGCTTCGAAACCCATCAGCTTTCCATCGAGTGAAAACTGCACAGCTACTGCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU_N TPR_12 eIF3_p135

Protein Analysis

1847

Amino Acids

202.1

Weight (kDa)

6.23

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLU_N PF15044 47 - 117 5e-11 Mitochondrial function, CLU-N-term
eIF3_p135 PF12807 721 - 863 2.3e-23 Translation initiation factor eIF3 subunit 135
TPR_12 PF13424 903 - 965 2.2e-07 Tetratricopeptide repeat
TPR_NPHP3 PF24885 905 - 1003 1.8e-07 Nephrocystin-3 TPR domain
TPR_10 PF13374 933 - 974 2.1e-09 Tetratricopeptide repeat
TPR_12 PF13424 933 - 1003 1.4e-12 Tetratricopeptide repeat
TPR_10 PF13374 1017 - 1057 3.4e-07 Tetratricopeptide repeat
TPR_12 PF13424 1017 - 1091 5.3e-12 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 156, 255
Acc36I ACCTGC 4 cut(s) 905, 1066, 4369, 5186
AccB1I GGYRCC 2 cut(s) 4, 1517
AccB7I CCANNNNNTGG 2 cut(s) 2171, 5059
AccI GTMKAC 3 cut(s) 1119, 4031, 5425
AccII CGCG 6 cut(s) 312, 320, 333, 371, 476, 4988
AccIII TCCGGA 2 cut(s) 100, 445
AclI AACGTT 1 cut(s) 232
AclWI GGATC 8 cut(s) 399, 1361, 1836, 3617, 4319, 4332, 4759, 5096
AcoI YGGCCR 1 cut(s) 4775
AcsI RAATTY 7 cut(s) 1001, 1296, 2411, 3261, 3974, 5063, 5124
AcvI CACGTG 2 cut(s) 325, 2576
AcyI GRCGYC 4 cut(s) 153, 252, 411, 534
AfaI GTAC 9 cut(s) 903, 2433, 2640, 3099, 3298, 3970, 4938, 4948, 5028
AflII CTTAAG 2 cut(s) 1847, 3412
AflIII ACRYGT 5 cut(s) 640, 3023, 3100, 3718, 5219
AhlI ACTAGT 2 cut(s) 4961, 5336
AjiI CACGTC 2 cut(s) 517, 2515
AjnI CCWGG 3 cut(s) 3314, 4168, 4798
AjuI GAANNNNNNNTTGG 2 cut(s) 2372, 2404
AleI CACNNNNGTG 1 cut(s) 3414
Alw21I GWGCWC 3 cut(s) 3004, 3707, 4841
Alw26I GTCTC 7 cut(s) 259, 433, 496, 987, 2076, 2365, 2598
AlwI GGATC 8 cut(s) 399, 1361, 1836, 3617, 4319, 4332, 4759, 5096
AlwNI CAGNNNCTG 5 cut(s) 2054, 4805, 5081, 5398, 5531
Ama87I CYCGRG 1 cut(s) 4641
Aor13HI TCCGGA 2 cut(s) 100, 445
AoxI GGCC 7 cut(s) 453, 1888, 3154, 3406, 3755, 3914, 4775
ApoI RAATTY 7 cut(s) 1001, 1296, 2411, 3261, 3974, 5063, 5124
ArsI GACNNNNNNTTYG 2 cut(s) 986, 1018
Asp700I GAANNNNTTC 5 cut(s) 734, 1094, 3678, 4982, 5354
AspLEI GCGC 8 cut(s) 312, 314, 322, 330, 371, 759, 1333, 1640
AsuC2I CCSGG 1 cut(s) 4749
AsuII TTCGAA 2 cut(s) 2608, 5489
AvaI CYCGRG 1 cut(s) 4641
AvaII GGWCC 9 cut(s) 1228, 2777, 3029, 3281, 4358, 4428, 4446, 4745, 5252
AxyI CCTNAGG 1 cut(s) 3684
BaeI ACNNNNGTAYC 2 cut(s) 1408, 1441
BalI TGGCCA 1 cut(s) 4777
BamHI GGATCC 1 cut(s) 4324
BanI GGYRCC 2 cut(s) 4, 1517
BanII GRGCYC 2 cut(s) 2398, 3707
BbrPI CACGTG 2 cut(s) 325, 2576
BbsI GAAGAC 2 cut(s) 2201, 3555
Bbv12I GWGCWC 3 cut(s) 3004, 3707, 4841
BbvCI CCTCAGC 1 cut(s) 3535
BceAI ACGGC 4 cut(s) 806, 1077, 3983, 4460
BciT130I CCWGG 3 cut(s) 3316, 4170, 4800
BciVI GTATCC 2 cut(s) 1731, 4247
BclI TGATCA 1 cut(s) 1501
BcnI CCSGG 1 cut(s) 4749
BcoDI GTCTC 7 cut(s) 259, 433, 496, 987, 2076, 2365, 2598
BcuI ACTAGT 2 cut(s) 4961, 5336
BfmI CTRYAG 7 cut(s) 739, 1947, 2820, 3393, 3820, 4044, 4116
BfrI CTTAAG 2 cut(s) 1847, 3412
BfuAI ACCTGC 4 cut(s) 905, 1066, 4369, 5186
BfuI GTATCC 2 cut(s) 1731, 4247
BglII AGATCT 1 cut(s) 5257
BlpI GCTNAGC 2 cut(s) 542, 1674
Bme1390I CCNGG 4 cut(s) 3316, 4170, 4749, 4800
Bme18I GGWCC 9 cut(s) 1228, 2777, 3029, 3281, 4358, 4428, 4446, 4745, 5252
BmeT110I CYCGRG 1 cut(s) 4641
BmgBI CACGTC 2 cut(s) 517, 2515
BmrFI CCNGG 4 cut(s) 3316, 4170, 4749, 4800
BpiI GAAGAC 2 cut(s) 2201, 3555
BplI GAGNNNNNCTC 4 cut(s) 4520, 4552, 4601, 4633
BpmI CTGGAG 6 cut(s) 1329, 2382, 2705, 2859, 5130, 5135
Bpu10I CCTNAGC 2 cut(s) 1983, 3535
Bpu1102I GCTNAGC 2 cut(s) 542, 1674
Bpu14I TTCGAA 2 cut(s) 2608, 5489
BpuEI CTTGAG 6 cut(s) 248, 386, 471, 542, 3341, 3890
BpuMI CCSGG 1 cut(s) 4749
Bsa29I ATCGAT 1 cut(s) 5166
BsaAI YACGTR 3 cut(s) 325, 2537, 2576
BsaBI GATNNNNATC 2 cut(s) 83, 2847
BsaHI GRCGYC 4 cut(s) 153, 252, 411, 534
BsaJI CCNNGG 9 cut(s) 474, 1016, 3336, 3964, 4431, 4476, 4772, 4798, 4821
BsaWI WCCGGW 5 cut(s) 100, 431, 445, 1171, 4714
Bse118I RCCGGY 1 cut(s) 382
Bse21I CCTNAGG 1 cut(s) 3684
Bse3DI GCAATG 7 cut(s) 703, 1428, 2062, 3254, 3483, 4728, 4895
Bse8I GATNNNNATC 2 cut(s) 83, 2847
BseAI TCCGGA 2 cut(s) 100, 445
BseBI CCWGG 3 cut(s) 3316, 4170, 4800
BseCI ATCGAT 1 cut(s) 5166
BseDI CCNNGG 9 cut(s) 474, 1016, 3336, 3964, 4431, 4476, 4772, 4798, 4821
BseJI GATNNNNATC 2 cut(s) 83, 2847
BseMI GCAATG 7 cut(s) 703, 1428, 2062, 3254, 3483, 4728, 4895
BsePI GCGCGC 1 cut(s) 310
BseRI GAGGAG 5 cut(s) 1703, 3523, 4831, 4836, 5100
BseYI CCCAGC 2 cut(s) 3660, 5074
BsgI GTGCAG 6 cut(s) 337, 1172, 1362, 2285, 4122, 5506
Bsh1236I CGCG 6 cut(s) 312, 320, 333, 371, 476, 4988
BshFI GGCC 7 cut(s) 455, 1890, 3156, 3408, 3757, 3916, 4777
BshNI GGYRCC 2 cut(s) 4, 1517
BshVI ATCGAT 1 cut(s) 5166
BsiHKAI GWGCWC 3 cut(s) 3004, 3707, 4841
BsiHKCI CYCGRG 1 cut(s) 4641
BsiSI CCGG 8 cut(s) 101, 383, 432, 446, 498, 1172, 4715, 4748
BslFI GGGAC 7 cut(s) 1241, 1836, 1843, 2254, 3385, 4441, 4545
BsmAI GTCTC 7 cut(s) 259, 433, 496, 987, 2076, 2365, 2598
BsmBI CGTCTC 3 cut(s) 259, 433, 987
BsmFI GGGAC 7 cut(s) 1241, 1836, 1843, 2254, 3385, 4441, 4545
BsmI GAATGC 3 cut(s) 759, 1094, 5409
BsnI GGCC 7 cut(s) 455, 1890, 3156, 3408, 3757, 3916, 4777
BsoBI CYCGRG 1 cut(s) 4641
Bsp119I TTCGAA 2 cut(s) 2608, 5489
Bsp1286I GDGCHC 4 cut(s) 2398, 3004, 3707, 4841
Bsp13I TCCGGA 2 cut(s) 100, 445
Bsp1407I TGTACA 1 cut(s) 3097
Bsp1720I GCTNAGC 2 cut(s) 542, 1674
BspANI GGCC 7 cut(s) 455, 1890, 3156, 3408, 3757, 3916, 4777
BspDI ATCGAT 1 cut(s) 5166
BspEI TCCGGA 2 cut(s) 100, 445
BspFNI CGCG 6 cut(s) 312, 320, 333, 371, 476, 4988
BspHI TCATGA 2 cut(s) 2281, 3451
BspMAI CTGCAG 1 cut(s) 4048
BspMI ACCTGC 4 cut(s) 905, 1066, 4369, 5186
BspPI GGATC 8 cut(s) 399, 1361, 1836, 3617, 4319, 4332, 4759, 5096
BspQI GCTCTTC 4 cut(s) 300, 1614, 2127, 2665
BspT104I TTCGAA 2 cut(s) 2608, 5489
BspT107I GGYRCC 2 cut(s) 4, 1517
BspTI CTTAAG 2 cut(s) 1847, 3412
BsrDI GCAATG 7 cut(s) 703, 1428, 2062, 3254, 3483, 4728, 4895
BsrFI RCCGGY 1 cut(s) 382
BsrGI TGTACA 1 cut(s) 3097
BssAI RCCGGY 1 cut(s) 382
BssECI CCNNGG 9 cut(s) 474, 1016, 3336, 3964, 4431, 4476, 4772, 4798, 4821
BssHII GCGCGC 1 cut(s) 310
BssNI GRCGYC 4 cut(s) 153, 252, 411, 534
BssT1I CCWWGG 4 cut(s) 1016, 3336, 3964, 4772
Bst2UI CCWGG 3 cut(s) 3316, 4170, 4800
BstACI GRCGYC 4 cut(s) 153, 252, 411, 534
BstAFI CTTAAG 2 cut(s) 1847, 3412
BstAPI GCANNNNNTGC 1 cut(s) 2030
BstAUI TGTACA 1 cut(s) 3097
BstBAI YACGTR 3 cut(s) 325, 2537, 2576
BstBI TTCGAA 2 cut(s) 2608, 5489
BstDSI CCRYGG 4 cut(s) 474, 4431, 4476, 4821
BstEII GGTNACC 1 cut(s) 2936
BstFNI CGCG 6 cut(s) 312, 320, 333, 371, 476, 4988
BstHHI GCGC 8 cut(s) 312, 314, 322, 330, 371, 759, 1333, 1640
BstMAI GTCTC 7 cut(s) 259, 433, 496, 987, 2076, 2365, 2598
BstNI CCWGG 3 cut(s) 3316, 4170, 4800
BstPI GGTNACC 1 cut(s) 2936
BstSCI CCNGG 4 cut(s) 3314, 4168, 4747, 4798
BstSFI CTRYAG 7 cut(s) 739, 1947, 2820, 3393, 3820, 4044, 4116
BstUI CGCG 6 cut(s) 312, 320, 333, 371, 476, 4988
BstV2I GAAGAC 2 cut(s) 2201, 3555
BstX2I RGATCY 5 cut(s) 1841, 3622, 4324, 4751, 5257
BstXI CCANNNNNNTGG 1 cut(s) 4232
BstYI RGATCY 5 cut(s) 1841, 3622, 4324, 4751, 5257
Bsu15I ATCGAT 1 cut(s) 5166
Bsu36I CCTNAGG 1 cut(s) 3684
BsuI GTATCC 2 cut(s) 1731, 4247
BsuRI GGCC 7 cut(s) 455, 1890, 3156, 3408, 3757, 3916, 4777
BsuTUI ATCGAT 1 cut(s) 5166
BtgI CCRYGG 4 cut(s) 474, 4431, 4476, 4821
BtrI CACGTC 2 cut(s) 517, 2515
BtsI GCAGTG 5 cut(s) 1204, 1356, 2328, 4041, 5000
BveI ACCTGC 4 cut(s) 905, 1066, 4369, 5186
CaiI CAGNNNCTG 5 cut(s) 2054, 4805, 5081, 5398, 5531
CciI TCATGA 2 cut(s) 2281, 3451
CfoI GCGC 8 cut(s) 312, 314, 322, 330, 371, 759, 1333, 1640
Cfr10I RCCGGY 1 cut(s) 382
Cfr42I CCGCGG 1 cut(s) 477
ClaI ATCGAT 1 cut(s) 5166
CseI GACGC 5 cut(s) 262, 360, 419, 542, 3395
CsiI ACCWGGT 1 cut(s) 4168
Csp6I GTAC 9 cut(s) 902, 2432, 2639, 3098, 3297, 3969, 4937, 4947, 5027
CviQI GTAC 9 cut(s) 902, 2432, 2639, 3098, 3297, 3969, 4937, 4947, 5027
DraI TTTAAA 1 cut(s) 237
EaeI YGGCCR 1 cut(s) 4775
EciI GGCGGA 4 cut(s) 146, 369, 457, 1079
Ecl136II GAGCTC 1 cut(s) 3705
Eco130I CCWWGG 4 cut(s) 1016, 3336, 3964, 4772
Eco147I AGGCCT 1 cut(s) 3757
Eco24I GRGCYC 2 cut(s) 2398, 3707
Eco32I GATATC 1 cut(s) 2884
Eco47I GGWCC 9 cut(s) 1228, 2777, 3029, 3281, 4358, 4428, 4446, 4745, 5252
Eco53kI GAGCTC 1 cut(s) 3705
Eco72I CACGTG 2 cut(s) 325, 2576
Eco81I CCTNAGG 1 cut(s) 3684
Eco88I CYCGRG 1 cut(s) 4641
Eco91I GGTNACC 1 cut(s) 2936
EcoICRI GAGCTC 1 cut(s) 3705
EcoO109I RGGNCCY 1 cut(s) 1228
EcoO65I GGTNACC 1 cut(s) 2936
EcoRI GAATTC 4 cut(s) 1296, 2411, 5063, 5124
EcoRII CCWGG 3 cut(s) 3314, 4168, 4798
EcoRV GATATC 1 cut(s) 2884
EcoT14I CCWWGG 4 cut(s) 1016, 3336, 3964, 4772
EcoT22I ATGCAT 2 cut(s) 2199, 4858
EcoT38I GRGCYC 2 cut(s) 2398, 3707
ErhI CCWWGG 4 cut(s) 1016, 3336, 3964, 4772
Esp3I CGTCTC 3 cut(s) 259, 433, 987
FalI AAGNNNNNCTT 6 cut(s) 675, 707, 1653, 1685, 2106, 2138
FaqI GGGAC 7 cut(s) 1241, 1836, 1843, 2254, 3385, 4441, 4545
FauI CCCGC 2 cut(s) 427, 3792
FauNDI CATATG 3 cut(s) 2737, 3775, 5431
FbaI TGATCA 1 cut(s) 1501
FblI GTMKAC 3 cut(s) 1119, 4031, 5425
FriOI GRGCYC 2 cut(s) 2398, 3707
GlaI GCGC 8 cut(s) 311, 313, 321, 329, 370, 758, 1332, 1639
GsaI CCCAGC 2 cut(s) 3664, 5078
GsuI CTGGAG 6 cut(s) 1329, 2382, 2705, 2859, 5130, 5135
HaeIII GGCC 7 cut(s) 455, 1890, 3156, 3408, 3757, 3916, 4777
HapII CCGG 8 cut(s) 101, 383, 432, 446, 498, 1172, 4715, 4748
HgaI GACGC 5 cut(s) 262, 360, 419, 542, 3395
HhaI GCGC 8 cut(s) 312, 314, 322, 330, 371, 759, 1333, 1640
Hin1I GRCGYC 4 cut(s) 153, 252, 411, 534
Hin6I GCGC 8 cut(s) 310, 312, 320, 328, 369, 757, 1331, 1638
HinP1I GCGC 8 cut(s) 310, 312, 320, 328, 369, 757, 1331, 1638
HincII GTYRAC 4 cut(s) 1120, 1258, 4925, 5426
HindII GTYRAC 4 cut(s) 1120, 1258, 4925, 5426
HindIII AAGCTT 5 cut(s) 689, 720, 960, 1676, 3275
HpaI GTTAAC 1 cut(s) 1258
HpaII CCGG 8 cut(s) 101, 383, 432, 446, 498, 1172, 4715, 4748
Hpy99I CGWCG 6 cut(s) 139, 350, 361, 413, 782, 1124
Hsp92I GRCGYC 4 cut(s) 153, 252, 411, 534
HspAI GCGC 8 cut(s) 310, 312, 320, 328, 369, 757, 1331, 1638
Kpn2I TCCGGA 2 cut(s) 100, 445
KroI GCCGGC 1 cut(s) 382
KroNI GCCGGC 1 cut(s) 384
Ksp22I TGATCA 1 cut(s) 1501
KspAI GTTAAC 1 cut(s) 1258
KspI CCGCGG 1 cut(s) 477
LguI GCTCTTC 4 cut(s) 300, 1614, 2127, 2665
MabI ACCWGGT 1 cut(s) 4168
MfeI CAATTG 3 cut(s) 3198, 4080, 5229
MflI RGATCY 5 cut(s) 1841, 3622, 4324, 4751, 5257
MhlI GDGCHC 4 cut(s) 2398, 3004, 3707, 4841
MlsI TGGCCA 1 cut(s) 4777
MluNI TGGCCA 1 cut(s) 4777
MmeI TCCRAC 3 cut(s) 2133, 4602, 5296
Mox20I TGGCCA 1 cut(s) 4777
Mph1103I ATGCAT 2 cut(s) 2199, 4858
MreI CGCCGGCG 1 cut(s) 382
MroI TCCGGA 2 cut(s) 100, 445
MroNI GCCGGC 1 cut(s) 382
MroXI GAANNNNTTC 5 cut(s) 734, 1094, 3678, 4982, 5354
MscI TGGCCA 1 cut(s) 4777
MslI CAYNNNNRTG 7 cut(s) 89, 645, 1917, 3065, 3414, 4098, 4230
Msp20I TGGCCA 1 cut(s) 4777
MspA1I CMGCKG 5 cut(s) 476, 796, 1376, 3176, 3796
MspCI CTTAAG 2 cut(s) 1847, 3412
MspI CCGG 8 cut(s) 101, 383, 432, 446, 498, 1172, 4715, 4748
MspR9I CCNGG 4 cut(s) 3316, 4170, 4749, 4800
MunI CAATTG 3 cut(s) 3198, 4080, 5229
Mva1269I GAATGC 3 cut(s) 759, 1094, 5409
MvaI CCWGG 3 cut(s) 3316, 4170, 4800
MvnI CGCG 6 cut(s) 312, 320, 333, 371, 476, 4988
NaeI GCCGGC 1 cut(s) 384
NciI CCSGG 1 cut(s) 4749
NdeI CATATG 3 cut(s) 2737, 3775, 5431
NgoMIV GCCGGC 1 cut(s) 382
NmeAIII GCCGAG 2 cut(s) 543, 562
NsiI ATGCAT 2 cut(s) 2199, 4858
NspV TTCGAA 2 cut(s) 2608, 5489
OliI CACNNNNGTG 1 cut(s) 3414
PaeI GCATGC 2 cut(s) 1916, 2658
PaeR7I CTCGAG 1 cut(s) 4641
PagI TCATGA 2 cut(s) 2281, 3451
PauI GCGCGC 1 cut(s) 310
PceI AGGCCT 1 cut(s) 3757
PciI ACATGT 5 cut(s) 640, 3023, 3100, 3718, 5219
PciSI GCTCTTC 4 cut(s) 300, 1614, 2127, 2665
PcsI WCGNNNNNNNCGW 1 cut(s) 330
PctI GAATGC 3 cut(s) 759, 1094, 5409
PdiI GCCGGC 1 cut(s) 384
PdmI GAANNNNTTC 5 cut(s) 734, 1094, 3678, 4982, 5354
PflFI GACNNNGTC 2 cut(s) 344, 2544
PflMI CCANNNNNTGG 2 cut(s) 2171, 5059
PfoI TCCNGGA 1 cut(s) 4747
PmaCI CACGTG 2 cut(s) 325, 2576
PmlI CACGTG 2 cut(s) 325, 2576
Ppu21I YACGTR 3 cut(s) 325, 2537, 2576
PpuMI RGGWCCY 1 cut(s) 1228
PscI ACATGT 5 cut(s) 640, 3023, 3100, 3718, 5219
Psp124BI GAGCTC 1 cut(s) 3707
Psp1406I AACGTT 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 1228
Psp6I CCWGG 3 cut(s) 3314, 4168, 4798
PspCI CACGTG 2 cut(s) 325, 2576
PspEI GGTNACC 1 cut(s) 2936
PspFI CCCAGC 2 cut(s) 3660, 5074
PspGI CCWGG 3 cut(s) 3314, 4168, 4798
PspPPI RGGWCCY 1 cut(s) 1228
PspXI VCTCGAGB 1 cut(s) 4641
PstI CTGCAG 1 cut(s) 4048
PstNI CAGNNNCTG 5 cut(s) 2054, 4805, 5081, 5398, 5531
PsuI RGATCY 5 cut(s) 1841, 3622, 4324, 4751, 5257
PsyI GACNNNGTC 2 cut(s) 344, 2544
PteI GCGCGC 1 cut(s) 310
PvuII CAGCTG 1 cut(s) 796
RsaI GTAC 9 cut(s) 903, 2433, 2640, 3099, 3298, 3970, 4938, 4948, 5028
RsaNI GTAC 9 cut(s) 902, 2432, 2639, 3098, 3297, 3969, 4937, 4947, 5027
RseI CAYNNNNRTG 7 cut(s) 89, 645, 1917, 3065, 3414, 4098, 4230
SacI GAGCTC 1 cut(s) 3707
SacII CCGCGG 1 cut(s) 477
SalI GTCGAC 2 cut(s) 1118, 5424
SapI GCTCTTC 4 cut(s) 300, 1614, 2127, 2665
ScrFI CCNGG 4 cut(s) 3316, 4170, 4749, 4800
SduI GDGCHC 4 cut(s) 2398, 3004, 3707, 4841
SexAI ACCWGGT 1 cut(s) 4168
SfcI CTRYAG 7 cut(s) 739, 1947, 2820, 3393, 3820, 4044, 4116
Sfr274I CTCGAG 1 cut(s) 4641
Sfr303I CCGCGG 1 cut(s) 477
SfuI TTCGAA 2 cut(s) 2608, 5489
SgrAI CRCCGGYG 1 cut(s) 382
SgrBI CCGCGG 1 cut(s) 477
SinI GGWCC 9 cut(s) 1228, 2777, 3029, 3281, 4358, 4428, 4446, 4745, 5252
SlaI CTCGAG 1 cut(s) 4641
SmiMI CAYNNNNRTG 7 cut(s) 89, 645, 1917, 3065, 3414, 4098, 4230
SmlI CTYRAG 9 cut(s) 263, 401, 486, 557, 1847, 3320, 3412, 3905, 4641
SmoI CTYRAG 9 cut(s) 263, 401, 486, 557, 1847, 3320, 3412, 3905, 4641
SpeI ACTAGT 2 cut(s) 4961, 5336
SphI GCATGC 2 cut(s) 1916, 2658
SseBI AGGCCT 1 cut(s) 3757
SspI AATATT 1 cut(s) 4792
SstI GAGCTC 1 cut(s) 3707
StuI AGGCCT 1 cut(s) 3757
StyD4I CCNGG 4 cut(s) 3314, 4168, 4747, 4798
StyI CCWWGG 4 cut(s) 1016, 3336, 3964, 4772
TatI WGTACW 2 cut(s) 2638, 3097
TauI GCSGC 7 cut(s) 333, 458, 473, 476, 3053, 3179, 3799
TspGWI ACGGA 4 cut(s) 152, 3284, 3869, 3997
Tth111I GACNNNGTC 2 cut(s) 344, 2544
Van91I CCANNNNNTGG 2 cut(s) 2171, 5059
Vha464I CTTAAG 2 cut(s) 1847, 3412
VpaK11BI GGWCC 9 cut(s) 1228, 2777, 3029, 3281, 4358, 4428, 4446, 4745, 5252
XapI RAATTY 7 cut(s) 1001, 1296, 2411, 3261, 3974, 5063, 5124
XhoI CTCGAG 1 cut(s) 4641
XmiI GTMKAC 3 cut(s) 1119, 4031, 5425
XmnI GAANNNNTTC 5 cut(s) 734, 1094, 3678, 4982, 5354
ZraI GACGTC 2 cut(s) 154, 253
Zsp2I ATGCAT 2 cut(s) 2199, 4858
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.