Rh1AG284600

Clustered mitochondria protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0007431
Physical Location & Seq
Forward (+)
51300923 .. 51314463
13541 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG284600.1

Sequence Viewer

Length: 5601 bp
ATGGCACCCAGAAACAGTCGTGGAAAGGGCAAAGGTGGAGAGAAGAAGAAGAAGGAAGAGAAGGTTCTTCCTGTTGTGATGGACATCACTGTGAACCTTCCAGATGAAAGCAGTGTTGTTTTGAAGGGAATATCGACGGACAGGATCATCGACGTTCGCCAACTATTATCAGTCAACACAGAAACTTGTAACATCACCAATATTTCACTATCCCATGAGGTAAGAGGGAAACGTTTAAAAGATACGGTGGACGTCTCCGCACTCAAGCCATGCGTCATCACCTTGGTCGAAGAGGACTATGATGAAGAGCGCGCCACCGCGCACGTGCGGCGCGTGCTGGACATCGTGGCCTGCACGACGAGCTTTGGCGCGTCACCGACGCCTCCGCCGACTCCGGCGAAGGATCAAAGCCTCAAGCCCGACGCCTCGTCCGCAGTCCTCTCCGGTAAAAATGCGCAGGATAATAAGACCGCCAAGAAATCCACCGCCACCGCCACCGCCACCGCCACCGCCGCGGCGGCCAAGCCGCAAGGATCTGCCGGAGCCGATAAGCGTGACGTGGCCGTCGACTCGGACGCCGAGCTGAGCCACTCTTGCCTCAAGCTCGGTTCTTTCTACGACTTCTTCTCTCTCGCTCATCTCACTCCCCCGCTGCAATTTATCCGAAGGGTGACGAGACGACATGTCGATGAGATTTCCGGCGATGATCACCTGTTTTCTCTTGAAGTGAAGCTTTGCAATGGGAAGGTGGTTCTGGTTGAAGCTTGCAGAAAGGGATTCTATAGTGTAGGGAAGCAGCGCATTCTGTGTCACAACCTTGTCGATTTGCTACGCCAGCTTAGTAGAGCTTTTGACAATGCTTACGATGATCTGCTGAAAGCATTTTCGGAACGTAATAAGTTTGGGAATCTTCCCTATGGCTTTCGAGCAAACACATGGCTTGTACCGCCCATTGCAGGGCAGTCGCCTTCAGGTTTCCCTGCTCTTCCTGTGGAGGATGAAGCTTGGGGAGGAAATGGAGGGGGTCTAGGAAGGGATGGGCAATTTGATCTGATTCCTTGGGCTAATGAGTTTTGGTGTATTGCATCTATGCCTTGCAAGACGGCGGAGGAGAGGCAGGTTCGAGATAGGAAGGCATTCCTTCTTCACAGCCTATTTGTCGACGTTTCCATTTTTAGAGCCATTAAGGCTGTGCAGCATGTGATGGCAAAGCCGGAATTAACATGTTCAGCTGCAAACAGTGAGGTTCTTTATACTGAGAGAGTAGGGGACTTGAATGTGATAGTAACAAAGGATGTTAACAATGCGAGCTGTAAGGTGGATACTAAAATTGATGGAATTCAGGCAACTGGAGTGGATAAAAAGAATCTAGCACAACGAAACCTTCTTAAAGGGATCACTGCTGACGAGAACACCGCTGCACATGATGTCACCACTCTTGGTGTTGTCAATGTCCGATATTGTGGTCACATTGCAGTTGTGAAAGTTGAGGGCAAAGAAACTAAGAAAGTCAGTTCTCCATCCCAAAGCATTGACCTCCTTGATCAACCTGAAGGTGGTGCCAATGCCCTTAATATCAACAGTTTGAGATTACTACTTCACACTACTACACCTTCAGAGCAGAATAAACTGGCATCACATGGGCAAGGTCTGGAACATGAAGAGCTTTCTGCTTCCTGCGCTTTTGTGGAGAAGCTATTAGAAGAAAGTCTTGCTAAGCTTGACAAAGAGGAGCTAGATTCTGATAGTTTTGTGAGATGGGAACTAGGAGCTTGCTGGATACAACACTTGCAAGACCAAAAAAATACAGACAAGGATAAGAAACCATTGGGTGAGAAGGCTAAGAATGAGATGAAGGTCGAGGGACTTGGGACACCTCTTAAATCCCTTAAGAACACAAAGAAGAAATCAGATGGAGCCAATATTAAAGTGCAGTCTGATAGCTCAAAGTTGCATGCAGATGGTGTTGTGGGAGAAGTAGAAAATGCTATAGGTTCTGTGGAATCAAAGTTTGAAACCAGTGCTAAAGAAAATGAGCTTGTGCTGACAGAGATGCTCTCTGACACAGCCTTTGCTCGACTAAAAGAATCAGAAACTGGACTTCATTGCAAGTCTCGGCAAGAACTGATCGACTTATCTCAGAAGTATTACTCTGAAGTTGCTCTTCCAAAACTGGTAGCCGATTTTGGTTCATTGGAACTTTCACCAGTTGATGGTCGAACTTTAACTGATTTCATGCATACTAGAGGTCTTCGGATGCGTTCTCTGGGGCAAGTTGTCAAGCTATCAGAGAAGCTATCACATGTGCAGTCCCTTTGCATTCATGAGATGATAGTGCGAGCTTTTAAGCATATACTTCAGGCAGTGATTGCTGCTGTTAATGACACTGAGAAAATGGCTGCCTCAATTGCTGCTGCATTGAATCTTATGTTGGGGGCTCCAGAAAATGAAGAATTCAATAAGTCTTTCAATGTGCATTCCCTTGTGTGGAGATGGCTGGAAGTATTCTTGCGAAAGAGATATGGATGGGATGTTAGCAGCTTCAACTACAATGATGTGAGGAGATTTGCGATTCTACGTGGCCTGTGTCATAAGGTGGGCATTGAGATGGTTCCACGAGATTTTGATATGGAGTCTCCAAATCCATTTCAGAGTTCTGATATTGTCAGCTTAGTTCCAGTACATAAGCAAGCTGCATGCTCTTCGGCAGATGGTAGGCAACTGTTGGAGTCATCAAAAACAGCCTTAGACAAGGGAAAACTTGAAGATGCAGTTGCATATGGCACTAAGGCTCTTGCAAAGCTGGTAGCAGTTTGTGGTCCATACCATCGAATGACAGCAGGAGCTTACAGCCTCCTTGCTGTAGTTTTATATCACACTGGAGATTTTAATCAGGCTACAATTTATCAGCAAAAGGCTCTGGATATCAATGAGAGAGAATTAGGGCTTGACCATCCAGACACCATGAAGAGTTATGGGGATCTTGCTGTGTTCTATTACAGACTTCAACATACAGAGCTGGCTCTCAAATATGTAAAACGAGCTCTGTATCTCTTGCATCTCACATGTGGACCATCTCATCCAAACACTGCTGCAACATACATCAACGTGGCTATGATGGAAGAAGGCCTGGGAAATGTACATGTTGCCCTCAGATATCTACACAAGGCTTTGAAGTGTAATCAGAAGTTACTTGGCCCAGATCATATTCAGACAGCGGCTAGTTACCATGCTATTGCAATTGCACTCTCATTGATGGAAGCATACCCTTTAAGTGTTCAGCATGAGCAGACAACATTGCAAATTCTGCGTGCAAAGCTTGGACCAGATGATCTACGTACACAAGATGCTGCTGCCTGGCTTGAGTACTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCAAGAAATGGGACTCGAAAACCAGATGCATCTATAGCCAGCAAAGGCCACTTAAGCGTATCAGATTTGCTTGACTACATCAATCCCACTCATGATGCTAAAGGGAGAGATGCGGCAATGAAGAGGAAAACCTACATAACAAAGTTGAAGGAAAAATCCTATCAAACTATCAGCTCAGCAAGTTCTGACGAATCTTCAAAAGAAACCACAAAAGAGGTTTCAGACGAAGAAACACATACACTTGAACCAAGAGAAAGAACAGATCCCATCCAAGAAAACATCCCGGCTTCAGTTGAACCCCAGCATGTTGTAGAAGAAATTCCTGAGGAAAATTCAAACATGAGCTCTTCTGAAACACATGTTGAAGGGGAGGATGACTGGCAACCAGTTCAAAGGCCTAGATCAGCGGGTTCATATGGGCGGCGTGTAAAGCAGCGGCGGGCAGCTATTGGGAAGGTTTATAGTTACCAGAAGAAATATGTAGATGCTGATATGGATTACCCTTCAGTGAAGAATACTAACCAAAACAGTAGGTATTACCTTCTAAAGAAAAGGCCAACATCTCATGGAAGTTATACAGAAAATCAGATTGCGAATCCCTCCCAAGGTACTAAATTTGGACGGAGAATGGTAAAAGCTGTAGCATACAGAGTCAAGTCTATGCCTTTGTCTACCAAAGTTGTTGCAGCAGAAAGTTTGAGTTCCTCATCAGAAGTCAGTCCAAATGTTTCATCACATGGGATTGGTCCAGTTAAAGGTTCTATAGGCAGTCTTGGAAAATCTCCTTCATACAAGGAAGTAGCATTGGCTCCACCAGGTAGTATTGCTAAAATGCAAACTGTTTTCCCTCAGAATGGCATTCCAGATAACCATGAGCATGGTATCCAGAGACAAGAAGAGGAAATAATTGAAATCAAAGGAGATTCCAAACCAAAGGCTGTAGTTGAAACTATACTTGAAGAAAAGAAGGATCCTGTATTGGTTTCCACAGATGTGTTACGAGAGCAAACTGGACCTGTTGAGAAGAAAGAAGATACTAATTCACCTGAAGTGAAGGAAGATAAAAATTCACTGATATTCGGGACCGTGGATGAACTTGGATCCAGTGCTGTTAAGTTTCAAGAGGCAGCAGTTGATAACGTATTAGTAGATGGACTGCCAAAATCCATTGATTCTGCCAAGGAGGGACTCGGTGAGAACAATCCATCTAGCACTTCTGAATTGCATGATTCCAACTCCACTTTGCAAGGAGTAGATGATTTGGAGGCATCCTTGCTTGTTACTTCAGCTGATACTCGGGGATTGCCAAATAAGAAGTTATCTGCATCGGCAGCTCCATTCAATCCCTCACCATCCACTCGTGCTGCTCCGGTTCCCATGAACATTGCTATACCTTCTGGTGCGGGTTCTGTCCCAACTATTGCACCTTGGCCAGTAAACCTGAATATTCACCCAGGGGCAGCTACTGTCTTACCCACAGTTAATCCCATGTGCTCCTCTCCTCATCATCCATACCCTTCTCCCCCTGCTACCCCGAATATCATACAGCCATTGCCATTTATGTTCCCTCCTCCTTATAGTCAACCCCAAGTTGTACGAACCAGTACCTTTCCTGTGACTAGTGCGTTTCATCCAAATCATTACACATGGCAGTGCAATGTGAATCCTAATGTATCCGAGTTTGTACCTACAACAGTTTGGCATGGTTGCCATCCAATGGAATTCTCTGCCCCAGCACCTGTTGTTGAGCCAATTTCTGATCCCTCTCCCTTGGAGTCAAAAATTCAGAACGATGATTCTGCTCCAGTTCTGCCAGTGGACATTGATAATGTGGGGGAAACTAAGAAAGAAGCGGACATTCTAACATCAGAGGCAACTTGCAATCCAATTGAAAGTGTCAAGGAAGTTGGTCCAGATCTTTGTGGGGTTGAGAATGCTCAGAACGAACCATGTGACAGCCCAAATGGAAAAGTTGGAAGTAGCGCTGAAAGGACGACTGATGGAGAGAAAACCTTCAGCATTTTGATAAGGGGTAGAAGAAACCGAAAGCAGACTCTGAGAATGCCAGTAAGTTTGCTCAGTCGACCATATGGCTCACAGTCATTCAAAGTCATATATAACAGGGTGGTCAGGGGGAATGATGCGTCCAAACCCATCAGCTTTTCATCTAGTGAAAACTGCACAGCTACTGCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU_N TPR_12 eIF3_p135

Protein Analysis

1866

Amino Acids

204.14

Weight (kDa)

6.33

Isoelectric Point (pI)

44.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLU_N PF15044 46 - 116 4.5e-10 Mitochondrial function, CLU-N-term
eIF3_p135 PF12807 734 - 876 2.2e-24 Translation initiation factor eIF3 subunit 135
TPR_12 PF13424 916 - 978 2.3e-07 Tetratricopeptide repeat
TPR_NPHP3 PF24885 918 - 1016 1.8e-07 Nephrocystin-3 TPR domain
TPR_10 PF13374 946 - 987 2.1e-09 Tetratricopeptide repeat
TPR_12 PF13424 946 - 1016 1.5e-12 Tetratricopeptide repeat
TPR_10 PF13374 1030 - 1070 3.4e-07 Tetratricopeptide repeat
TPR_12 PF13424 1030 - 1104 5.3e-12 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 563
AatII GACGTC 1 cut(s) 255
Acc16I TGCGCA 1 cut(s) 456
Acc36I ACCTGC 1 cut(s) 1108
AccB1I GGYRCC 2 cut(s) 4, 1559
AccB7I CCANNNNNTGG 2 cut(s) 2213, 5119
AccI GTMKAC 4 cut(s) 567, 1161, 4073, 5485
AccII CGCG 5 cut(s) 312, 320, 333, 371, 515
AclI AACGTT 1 cut(s) 232
AcoI YGGCCR 3 cut(s) 519, 561, 4832
AcsI RAATTY 9 cut(s) 1338, 2453, 3303, 3720, 3733, 4016, 4468, 5123, 5184
AcvI CACGTG 1 cut(s) 325
AcyI GRCGYC 4 cut(s) 252, 380, 423, 576
AfaI GTAC 9 cut(s) 945, 2682, 3141, 3340, 3368, 4012, 4998, 5008, 5088
AfeI AGCGCT 1 cut(s) 5386
AfiI CCNNNNNNNGG 9 cut(s) 956, 957, 1556, 2213, 2487, 4007, 4157, 4256, 5119
AflII CTTAAG 2 cut(s) 1889, 3454
AflIII ACRYGT 6 cut(s) 682, 1223, 2302, 3065, 3142, 3760
AhdI GACNNNNNGTC 2 cut(s) 427, 683
AhlI ACTAGT 1 cut(s) 5021
AjiI CACGTC 1 cut(s) 559
AjnI CCWGG 4 cut(s) 3129, 3356, 4216, 4855
AjuI GAANNNNNNNTTGG 2 cut(s) 2414, 2446
AleI CACNNNNGTG 1 cut(s) 4394
Alw21I GWGCWC 3 cut(s) 3046, 3749, 4898
Alw26I GTCTC 5 cut(s) 259, 670, 2118, 2640, 4285
AlwNI CAGNNNCTG 5 cut(s) 2096, 4868, 5141, 5458, 5591
Ama87I CYCGRG 1 cut(s) 4698
Aor51HI AGCGCT 1 cut(s) 5386
ApoI RAATTY 9 cut(s) 1338, 2453, 3303, 3720, 3733, 4016, 4468, 5123, 5184
ArsI GACNNNNNNTTYG 2 cut(s) 2054, 2086
Asp700I GAANNNNTTC 3 cut(s) 1136, 3720, 5414
AspLEI GCGC 9 cut(s) 312, 314, 322, 333, 371, 457, 801, 1682, 5387
AspS9I GGNCC 8 cut(s) 2819, 3071, 3197, 3323, 4148, 4415, 4485, 5312
AsuC2I CCSGG 1 cut(s) 3686
AvaI CYCGRG 1 cut(s) 4698
AvaII GGWCC 7 cut(s) 2819, 3071, 3323, 4148, 4415, 4485, 5312
AxyI CCTNAGG 1 cut(s) 3726
BalI TGGCCA 1 cut(s) 4834
BamHI GGATCC 2 cut(s) 4372, 4502
BanI GGYRCC 2 cut(s) 4, 1559
BanII GRGCYC 3 cut(s) 2440, 3046, 3749
BauI CACGAG 2 cut(s) 2616, 4761
BbrPI CACGTG 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 2243
Bbv12I GWGCWC 3 cut(s) 3046, 3749, 4898
BceAI ACGGC 2 cut(s) 548, 1119
BcgI CGANNNNNNTGC 6 cut(s) 945, 979, 2685, 2719, 5183, 5217
BciT130I CCWGG 4 cut(s) 3131, 3358, 4218, 4857
BciVI GTATCC 4 cut(s) 1315, 1773, 4295, 5086
BclI TGATCA 2 cut(s) 706, 1543
BcnI CCSGG 1 cut(s) 3686
BcoDI GTCTC 5 cut(s) 259, 670, 2118, 2640, 4285
BcuI ACTAGT 1 cut(s) 5021
BfmI CTRYAG 7 cut(s) 781, 1989, 2862, 3435, 4041, 4164, 4341
BfoI RGCGCY 1 cut(s) 5388
BfrI CTTAAG 2 cut(s) 1889, 3454
BfuAI ACCTGC 1 cut(s) 1108
BfuI GTATCC 4 cut(s) 1315, 1773, 4295, 5086
BglI GCCNNNNNGGC 2 cut(s) 518, 1187
BglII AGATCT 1 cut(s) 5317
BlpI GCTNAGC 3 cut(s) 584, 1716, 3577
BmcAI AGTACT 1 cut(s) 3368
Bme1390I CCNGG 5 cut(s) 3131, 3358, 3686, 4218, 4857
Bme18I GGWCC 7 cut(s) 2819, 3071, 3323, 4148, 4415, 4485, 5312
BmeRI GACNNNNNGTC 2 cut(s) 427, 683
BmeT110I CYCGRG 1 cut(s) 4698
BmgBI CACGTC 1 cut(s) 559
BmgT120I GGNCC 8 cut(s) 2819, 3071, 3197, 3323, 4148, 4415, 4485, 5312
BmrFI CCNGG 5 cut(s) 3131, 3358, 3686, 4218, 4857
BpiI GAAGAC 1 cut(s) 2243
BplI GAGNNNNNCTC 2 cut(s) 2042, 2074
BpmI CTGGAG 4 cut(s) 1371, 2424, 2901, 5190
Bpu1102I GCTNAGC 3 cut(s) 584, 1716, 3577
BpuEI CTTGAG 4 cut(s) 248, 398, 584, 3383
BpuMI CCSGG 1 cut(s) 3686
BsaAI YACGTR 3 cut(s) 325, 2579, 3338
BsaBI GATNNNNATC 2 cut(s) 83, 2889
BsaHI GRCGYC 4 cut(s) 252, 380, 423, 576
BsaWI WCCGGW 2 cut(s) 443, 4771
Bsc4I CCNNNNNNNGG 9 cut(s) 956, 957, 1556, 2213, 2487, 4007, 4157, 4256, 5119
Bse21I CCTNAGG 1 cut(s) 3726
Bse3DI GCAATG 9 cut(s) 745, 951, 1470, 2104, 3296, 3525, 4785, 4952, 5065
Bse8I GATNNNNATC 2 cut(s) 83, 2889
BseBI CCWGG 4 cut(s) 3131, 3358, 4218, 4857
BseJI GATNNNNATC 2 cut(s) 83, 2889
BseLI CCNNNNNNNGG 9 cut(s) 956, 957, 1556, 2213, 2487, 4007, 4157, 4256, 5119
BseMI GCAATG 9 cut(s) 745, 951, 1470, 2104, 3296, 3525, 4785, 4952, 5065
BsePI GCGCGC 1 cut(s) 310
BseRI GAGGAG 6 cut(s) 1124, 1745, 2575, 4888, 4893, 4962
BseYI CCCAGC 2 cut(s) 3702, 5134
BsgI GTGCAG 6 cut(s) 337, 1214, 1404, 1952, 2327, 5566
Bsh1236I CGCG 5 cut(s) 312, 320, 333, 371, 515
BshNI GGYRCC 2 cut(s) 4, 1559
BsiHKAI GWGCWC 3 cut(s) 3046, 3749, 4898
BsiHKCI CYCGRG 1 cut(s) 4698
BsiSI CCGG 7 cut(s) 395, 444, 540, 699, 1214, 3686, 4772
BslFI GGGAC 8 cut(s) 1283, 1878, 1885, 2296, 3427, 4498, 4602, 4799
BslI CCNNNNNNNGG 9 cut(s) 956, 957, 1556, 2213, 2487, 4007, 4157, 4256, 5119
BsmAI GTCTC 5 cut(s) 259, 670, 2118, 2640, 4285
BsmBI CGTCTC 2 cut(s) 259, 670
BsmFI GGGAC 8 cut(s) 1283, 1878, 1885, 2296, 3427, 4498, 4602, 4799
BsmI GAATGC 7 cut(s) 801, 1136, 2319, 2476, 4260, 5341, 5469
BsoBI CYCGRG 1 cut(s) 4698
Bsp1286I GDGCHC 4 cut(s) 2440, 3046, 3749, 4898
Bsp1407I TGTACA 1 cut(s) 3139
Bsp1720I GCTNAGC 3 cut(s) 584, 1716, 3577
BspFNI CGCG 5 cut(s) 312, 320, 333, 371, 515
BspHI TCATGA 2 cut(s) 2323, 3493
BspMI ACCTGC 1 cut(s) 1108
BspQI GCTCTTC 6 cut(s) 300, 990, 1656, 2169, 2707, 3754
BspT107I GGYRCC 2 cut(s) 4, 1559
BspTI CTTAAG 2 cut(s) 1889, 3454
BsrDI GCAATG 9 cut(s) 745, 951, 1470, 2104, 3296, 3525, 4785, 4952, 5065
BsrGI TGTACA 1 cut(s) 3139
BssHII GCGCGC 1 cut(s) 310
BssNI GRCGYC 4 cut(s) 252, 380, 423, 576
BssSI CACGAG 2 cut(s) 2616, 4761
BssT1I CCWWGG 7 cut(s) 282, 1058, 3378, 4006, 4581, 4829, 5172
Bst2BI CACGAG 2 cut(s) 2616, 4761
Bst2UI CCWGG 4 cut(s) 3131, 3358, 4218, 4857
BstACI GRCGYC 4 cut(s) 252, 380, 423, 576
BstAFI CTTAAG 2 cut(s) 1889, 3454
BstAPI GCANNNNNTGC 2 cut(s) 2369, 3307
BstAUI TGTACA 1 cut(s) 3139
BstBAI YACGTR 3 cut(s) 325, 2579, 3338
BstDSI CCRYGG 2 cut(s) 513, 4488
BstFNI CGCG 5 cut(s) 312, 320, 333, 371, 515
BstH2I RGCGCY 1 cut(s) 5388
BstHHI GCGC 9 cut(s) 312, 314, 322, 333, 371, 457, 801, 1682, 5387
BstMAI GTCTC 5 cut(s) 259, 670, 2118, 2640, 4285
BstNI CCWGG 4 cut(s) 3131, 3358, 4218, 4857
BstSCI CCNGG 5 cut(s) 3129, 3356, 3684, 4216, 4855
BstSFI CTRYAG 7 cut(s) 781, 1989, 2862, 3435, 4041, 4164, 4341
BstSNI TACGTA 1 cut(s) 3338
BstUI CGCG 5 cut(s) 312, 320, 333, 371, 515
BstV2I GAAGAC 1 cut(s) 2243
BstX2I RGATCY 6 cut(s) 533, 2980, 3664, 4372, 4502, 5317
BstXI CCANNNNNNTGG 1 cut(s) 4280
BstYI RGATCY 6 cut(s) 533, 2980, 3664, 4372, 4502, 5317
Bsu36I CCTNAGG 1 cut(s) 3726
BsuI GTATCC 4 cut(s) 1315, 1773, 4295, 5086
BtgI CCRYGG 2 cut(s) 513, 4488
BtgZI GCGATG 1 cut(s) 717
BtrI CACGTC 1 cut(s) 559
BtsI GCAGTG 5 cut(s) 118, 1398, 2370, 3087, 5060
BveI ACCTGC 1 cut(s) 1108
CaiI CAGNNNCTG 5 cut(s) 2096, 4868, 5141, 5458, 5591
CciI TCATGA 2 cut(s) 2323, 3493
CfoI GCGC 9 cut(s) 312, 314, 322, 333, 371, 457, 801, 1682, 5387
Cfr13I GGNCC 8 cut(s) 2819, 3071, 3197, 3323, 4148, 4415, 4485, 5312
Cfr42I CCGCGG 1 cut(s) 516
CseI GACGC 6 cut(s) 262, 360, 388, 431, 584, 5535
CsiI ACCWGGT 1 cut(s) 4216
Csp6I GTAC 9 cut(s) 944, 2681, 3140, 3339, 3367, 4011, 4997, 5007, 5087
CspCI CAANNNNNGTGG 2 cut(s) 1335, 1370
CviQI GTAC 9 cut(s) 944, 2681, 3140, 3339, 3367, 4011, 4997, 5007, 5087
DraI TTTAAA 1 cut(s) 237
DrdI GACNNNNNNGTC 1 cut(s) 563
DriI GACNNNNNGTC 2 cut(s) 427, 683
DseDI GACNNNNNNGTC 1 cut(s) 563
EaeI YGGCCR 3 cut(s) 519, 561, 4832
Eam1105I GACNNNNNGTC 2 cut(s) 427, 683
EciI GGCGGA 2 cut(s) 375, 1121
Ecl136II GAGCTC 2 cut(s) 3044, 3747
Eco105I TACGTA 1 cut(s) 3338
Eco130I CCWWGG 7 cut(s) 282, 1058, 3378, 4006, 4581, 4829, 5172
Eco147I AGGCCT 2 cut(s) 3129, 3799
Eco24I GRGCYC 3 cut(s) 2440, 3046, 3749
Eco32I GATATC 2 cut(s) 2926, 3158
Eco47I GGWCC 7 cut(s) 2819, 3071, 3323, 4148, 4415, 4485, 5312
Eco47III AGCGCT 1 cut(s) 5386
Eco53kI GAGCTC 2 cut(s) 3044, 3747
Eco72I CACGTG 1 cut(s) 325
Eco81I CCTNAGG 1 cut(s) 3726
Eco88I CYCGRG 1 cut(s) 4698
EcoICRI GAGCTC 2 cut(s) 3044, 3747
EcoRI GAATTC 3 cut(s) 1338, 2453, 5123
EcoRII CCWGG 4 cut(s) 3129, 3356, 4216, 4855
EcoRV GATATC 2 cut(s) 2926, 3158
EcoT14I CCWWGG 7 cut(s) 282, 1058, 3378, 4006, 4581, 4829, 5172
EcoT22I ATGCAT 2 cut(s) 2241, 3433
EcoT38I GRGCYC 3 cut(s) 2440, 3046, 3749
ErhI CCWWGG 7 cut(s) 282, 1058, 3378, 4006, 4581, 4829, 5172
Esp3I CGTCTC 2 cut(s) 259, 670
FalI AAGNNNNNCTT 6 cut(s) 717, 749, 1695, 1727, 2148, 2180
FaqI GGGAC 8 cut(s) 1283, 1878, 1885, 2296, 3427, 4498, 4602, 4799
FauI CCCGC 4 cut(s) 657, 3802, 3834, 4798
FauNDI CATATG 3 cut(s) 2779, 3817, 5491
FbaI TGATCA 2 cut(s) 706, 1543
FblI GTMKAC 4 cut(s) 567, 1161, 4073, 5485
FriOI GRGCYC 3 cut(s) 2440, 3046, 3749
FspI TGCGCA 1 cut(s) 456
GlaI GCGC 9 cut(s) 311, 313, 321, 332, 370, 456, 800, 1681, 5386
GsaI CCCAGC 2 cut(s) 3706, 5138
GsuI CTGGAG 4 cut(s) 1371, 2424, 2901, 5190
HaeII RGCGCY 1 cut(s) 5388
HapII CCGG 7 cut(s) 395, 444, 540, 699, 1214, 3686, 4772
HgaI GACGC 6 cut(s) 262, 360, 388, 431, 584, 5535
HhaI GCGC 9 cut(s) 312, 314, 322, 333, 371, 457, 801, 1682, 5387
Hin1I GRCGYC 4 cut(s) 252, 380, 423, 576
Hin6I GCGC 9 cut(s) 310, 312, 320, 331, 369, 455, 799, 1680, 5385
HinP1I GCGC 9 cut(s) 310, 312, 320, 331, 369, 455, 799, 1680, 5385
HincII GTYRAC 6 cut(s) 175, 568, 1162, 1300, 4985, 5486
HindII GTYRAC 6 cut(s) 175, 568, 1162, 1300, 4985, 5486
HindIII AAGCTT 5 cut(s) 731, 762, 1002, 1718, 3317
HpaI GTTAAC 1 cut(s) 1300
HpaII CCGG 7 cut(s) 395, 444, 540, 699, 1214, 3686, 4772
Hpy99I CGWCG 7 cut(s) 139, 155, 361, 382, 425, 569, 1166
Hsp92I GRCGYC 4 cut(s) 252, 380, 423, 576
HspAI GCGC 9 cut(s) 310, 312, 320, 331, 369, 455, 799, 1680, 5385
Ksp22I TGATCA 2 cut(s) 706, 1543
KspAI GTTAAC 1 cut(s) 1300
KspI CCGCGG 1 cut(s) 516
LguI GCTCTTC 6 cut(s) 300, 990, 1656, 2169, 2707, 3754
MabI ACCWGGT 1 cut(s) 4216
MfeI CAATTG 3 cut(s) 2406, 3240, 5289
MflI RGATCY 6 cut(s) 533, 2980, 3664, 4372, 4502, 5317
MhlI GDGCHC 4 cut(s) 2440, 3046, 3749, 4898
MlsI TGGCCA 1 cut(s) 4834
MluNI TGGCCA 1 cut(s) 4834
MmeI TCCRAC 3 cut(s) 2706, 4659, 5356
Mox20I TGGCCA 1 cut(s) 4834
Mph1103I ATGCAT 2 cut(s) 2241, 3433
MroXI GAANNNNTTC 3 cut(s) 1136, 3720, 5414
MscI TGGCCA 1 cut(s) 4834
MslI CAYNNNNRTG 8 cut(s) 89, 687, 1959, 2606, 3107, 4278, 4394, 5053
Msp20I TGGCCA 1 cut(s) 4834
MspA1I CMGCKG 8 cut(s) 515, 652, 1232, 1418, 3218, 3809, 3838, 4691
MspCI CTTAAG 2 cut(s) 1889, 3454
MspI CCGG 7 cut(s) 395, 444, 540, 699, 1214, 3686, 4772
MspR9I CCNGG 5 cut(s) 3131, 3358, 3686, 4218, 4857
MunI CAATTG 3 cut(s) 2406, 3240, 5289
Mva1269I GAATGC 7 cut(s) 801, 1136, 2319, 2476, 4260, 5341, 5469
MvaI CCWGG 4 cut(s) 3131, 3358, 4218, 4857
MvnI CGCG 5 cut(s) 312, 320, 333, 371, 515
NciI CCSGG 1 cut(s) 3686
NdeI CATATG 3 cut(s) 2779, 3817, 5491
NmeAIII GCCGAG 2 cut(s) 604, 2095
NmuCI GTSAC 8 cut(s) 372, 554, 670, 809, 1429, 1466, 5017, 5354
NsbI TGCGCA 1 cut(s) 456
NsiI ATGCAT 2 cut(s) 2241, 3433
OliI CACNNNNGTG 1 cut(s) 4394
PaeI GCATGC 2 cut(s) 1958, 2700
PagI TCATGA 2 cut(s) 2323, 3493
PasI CCCWGGG 1 cut(s) 4856
PauI GCGCGC 1 cut(s) 310
PceI AGGCCT 2 cut(s) 3129, 3799
PciI ACATGT 6 cut(s) 682, 1223, 2302, 3065, 3142, 3760
PciSI GCTCTTC 6 cut(s) 300, 990, 1656, 2169, 2707, 3754
PcsI WCGNNNNNNNCGW 3 cut(s) 330, 386, 564
PctI GAATGC 7 cut(s) 801, 1136, 2319, 2476, 4260, 5341, 5469
PdmI GAANNNNTTC 3 cut(s) 1136, 3720, 5414
PflMI CCANNNNNTGG 2 cut(s) 2213, 5119
PmaCI CACGTG 1 cut(s) 325
PmlI CACGTG 1 cut(s) 325
Ppu21I YACGTR 3 cut(s) 325, 2579, 3338
PscI ACATGT 6 cut(s) 682, 1223, 2302, 3065, 3142, 3760
Psp124BI GAGCTC 2 cut(s) 3046, 3749
Psp1406I AACGTT 1 cut(s) 232
Psp6I CCWGG 4 cut(s) 3129, 3356, 4216, 4855
PspCI CACGTG 1 cut(s) 325
PspFI CCCAGC 2 cut(s) 3702, 5134
PspGI CCWGG 4 cut(s) 3129, 3356, 4216, 4855
PspPI GGNCC 8 cut(s) 2819, 3071, 3197, 3323, 4148, 4415, 4485, 5312
PstNI CAGNNNCTG 5 cut(s) 2096, 4868, 5141, 5458, 5591
PsuI RGATCY 6 cut(s) 533, 2980, 3664, 4372, 4502, 5317
PteI GCGCGC 1 cut(s) 310
PvuII CAGCTG 2 cut(s) 1232, 4691
RsaI GTAC 9 cut(s) 945, 2682, 3141, 3340, 3368, 4012, 4998, 5008, 5088
RsaNI GTAC 9 cut(s) 944, 2681, 3140, 3339, 3367, 4011, 4997, 5007, 5087
RseI CAYNNNNRTG 8 cut(s) 89, 687, 1959, 2606, 3107, 4278, 4394, 5053
SacI GAGCTC 2 cut(s) 3046, 3749
SacII CCGCGG 1 cut(s) 516
SalI GTCGAC 3 cut(s) 566, 1160, 5484
SapI GCTCTTC 6 cut(s) 300, 990, 1656, 2169, 2707, 3754
Sau96I GGNCC 8 cut(s) 2819, 3071, 3197, 3323, 4148, 4415, 4485, 5312
ScaI AGTACT 1 cut(s) 3368
ScrFI CCNGG 5 cut(s) 3131, 3358, 3686, 4218, 4857
SduI GDGCHC 4 cut(s) 2440, 3046, 3749, 4898
SexAI ACCWGGT 1 cut(s) 4216
SfcI CTRYAG 7 cut(s) 781, 1989, 2862, 3435, 4041, 4164, 4341
Sfr303I CCGCGG 1 cut(s) 516
SgrBI CCGCGG 1 cut(s) 516
SinI GGWCC 7 cut(s) 2819, 3071, 3323, 4148, 4415, 4485, 5312
SmiMI CAYNNNNRTG 8 cut(s) 89, 687, 1959, 2606, 3107, 4278, 4394, 5053
SmlI CTYRAG 6 cut(s) 263, 413, 599, 1889, 3362, 3454
SmoI CTYRAG 6 cut(s) 263, 413, 599, 1889, 3362, 3454
SnaBI TACGTA 1 cut(s) 3338
SpeI ACTAGT 1 cut(s) 5021
SphI GCATGC 2 cut(s) 1958, 2700
SseBI AGGCCT 2 cut(s) 3129, 3799
SspI AATATT 3 cut(s) 202, 1924, 4849
SstI GAGCTC 2 cut(s) 3046, 3749
StuI AGGCCT 2 cut(s) 3129, 3799
StyD4I CCNGG 5 cut(s) 3129, 3356, 3684, 4216, 4855
StyI CCWWGG 7 cut(s) 282, 1058, 3378, 4006, 4581, 4829, 5172
TatI WGTACW 3 cut(s) 2680, 3139, 3366
TauI GCSGC 9 cut(s) 331, 515, 518, 521, 529, 3221, 3518, 3826, 3841
TseFI GTSAC 8 cut(s) 372, 554, 670, 809, 1429, 1466, 5017, 5354
Tsp45I GTSAC 8 cut(s) 372, 554, 670, 809, 1429, 1466, 5017, 5354
TspGWI ACGGA 2 cut(s) 152, 4039
Van91I CCANNNNNTGG 2 cut(s) 2213, 5119
Vha464I CTTAAG 2 cut(s) 1889, 3454
VpaK11BI GGWCC 7 cut(s) 2819, 3071, 3323, 4148, 4415, 4485, 5312
XapI RAATTY 9 cut(s) 1338, 2453, 3303, 3720, 3733, 4016, 4468, 5123, 5184
XmiI GTMKAC 4 cut(s) 567, 1161, 4073, 5485
XmnI GAANNNNTTC 3 cut(s) 1136, 3720, 5414
ZraI GACGTC 1 cut(s) 253
ZrmI AGTACT 1 cut(s) 3368
Zsp2I ATGCAT 2 cut(s) 2241, 3433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.