Clustered mitochondria protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G01320 AT1G01320 AT1G01320 |
| fragaria_vesca | FvH4_7g16420 FvH4_7g16420 |
| malus_domestica | MD01G1080500.v1.1 MD07G1149400.v1.1 |
| prunus_persica | Prupe.2G188000_v2.0.a1 Prupe.2G188000_v2.0.a1 |
| pyrus_communis | pycom01g10860 pycom03g14110 pycom07g14800 pycom14g11950 |
| rosa_chinensis | RchiOBHm_Chr1g0359431 RchiOBHm_Chr1g0359451 |
| rosa_laevigata | RLG00000027870 |
| rosa_multiflora | Rmu_ssc0000358.1_g000009 |
| rosa_roxburghii | Rroxscaffold_4G00297010 |
| rosa_rugosa | Rorug01G0271200 Rorug01G0271300 |
| rosa_samantha | Rh1AG284600 Rh1BG250600 Rh1CG268700 Rh1DG279700 |
| rosa_wichuraiana | Rw1G025280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 252 |
| Acc16I | TGCGCA | 1 cut(s) | 447 |
| Acc65I | GGTACC | 1 cut(s) | 910 |
| AccB1I | GGYRCC | 4 cut(s) | 4, 910, 1526, 4988 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 1208, 2183, 5104 |
| AccI | GTMKAC | 2 cut(s) | 5202, 5467 |
| AccII | CGCG | 2 cut(s) | 309, 330 |
| AciI | CCGC | 7 cut(s) | 255, 530, 766, 1775, 2567, 3039, 4796 |
| AclI | AACGTT | 1 cut(s) | 4257 |
| AclWI | GGATC | 8 cut(s) | 681, 1370, 2508, 4500, 4513, 4601, 4614, 5141 |
| AcoI | YGGCCR | 1 cut(s) | 4823 |
| AcsI | RAATTY | 9 cut(s) | 126, 196, 1010, 1212, 1305, 3273, 3973, 4156, 4672 |
| AcuI | CTGAAG | 6 cut(s) | 1539, 2145, 2312, 3870, 4329, 5383 |
| AcvI | CACGTG | 1 cut(s) | 4754 |
| AcyI | GRCGYC | 4 cut(s) | 249, 368, 1527, 3805 |
| AfaI | GTAC | 9 cut(s) | 912, 2117, 3111, 3310, 3338, 3988, 4219, 4952, 5080 |
| AflII | CTTAAG | 2 cut(s) | 398, 566 |
| AflIII | ACRYGT | 2 cut(s) | 328, 3112 |
| AgeI | ACCGGT | 1 cut(s) | 4985 |
| AjiI | CACGTC | 2 cut(s) | 322, 526 |
| AjnI | CCWGG | 8 cut(s) | 669, 783, 3099, 3642, 4213, 4269, 4846, 5089 |
| AleI | CACNNNNGTG | 2 cut(s) | 3426, 4876 |
| Alw21I | GWGCWC | 5 cut(s) | 840, 1913, 3016, 4116, 4883 |
| AlwI | GGATC | 8 cut(s) | 681, 1370, 2508, 4500, 4513, 4601, 4614, 5141 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 425, 4853, 5440 |
| Ama87I | CYCGRG | 2 cut(s) | 4686, 5063 |
| ApoI | RAATTY | 9 cut(s) | 126, 196, 1010, 1212, 1305, 3273, 3973, 4156, 4672 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 2024, 2056 |
| AseI | ATTAAT | 2 cut(s) | 3453, 4440 |
| AsiGI | ACCGGT | 1 cut(s) | 4985 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 5396 |
| Asp718I | GGTACC | 1 cut(s) | 910 |
| AspLEI | GCGC | 7 cut(s) | 309, 311, 319, 439, 448, 461, 1529 |
| AsuC2I | CCSGG | 1 cut(s) | 441 |
| AsuHPI | GGTGA | 5 cut(s) | 668, 2166, 3761, 4731, 4886 |
| AvaI | CYCGRG | 2 cut(s) | 4686, 5063 |
| AvaII | GGWCC | 8 cut(s) | 388, 1585, 2789, 2950, 3041, 4799, 5186, 5294 |
| BaeGI | GKGCMC | 1 cut(s) | 2244 |
| BalI | TGGCCA | 1 cut(s) | 4825 |
| BamHI | GGATCC | 2 cut(s) | 4505, 4606 |
| BanI | GGYRCC | 4 cut(s) | 4, 910, 1526, 4988 |
| BanII | GRGCYC | 5 cut(s) | 840, 1665, 1913, 4074, 4116 |
| BbrPI | CACGTG | 1 cut(s) | 4754 |
| BbsI | GAAGAC | 1 cut(s) | 2213 |
| Bbv12I | GWGCWC | 5 cut(s) | 840, 1913, 3016, 4116, 4883 |
| BceAI | ACGGC | 6 cut(s) | 330, 815, 901, 2330, 3833, 4102 |
| BciT130I | CCWGG | 8 cut(s) | 671, 785, 3101, 3644, 4215, 4271, 4848, 5091 |
| BciVI | GTATCC | 1 cut(s) | 232 |
| BclI | TGATCA | 2 cut(s) | 1510, 3718 |
| BcnI | CCSGG | 1 cut(s) | 441 |
| BfaI | CTAG | 9 cut(s) | 995, 1337, 1406, 1688, 1703, 2214, 2642, 3780, 4077 |
| BfmI | CTRYAG | 7 cut(s) | 417, 748, 1923, 1968, 2832, 3405, 4161 |
| BfoI | RGCGCY | 2 cut(s) | 462, 1530 |
| BfrI | CTTAAG | 2 cut(s) | 398, 566 |
| BfuI | GTATCC | 1 cut(s) | 232 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1154 |
| BglII | AGATCT | 1 cut(s) | 3782 |
| BlpI | GCTNAGC | 1 cut(s) | 1683 |
| BmcAI | AGTACT | 2 cut(s) | 2117, 3338 |
| Bme1390I | CCNGG | 9 cut(s) | 441, 671, 785, 3101, 3644, 4215, 4271, 4848, 5091 |
| Bme18I | GGWCC | 8 cut(s) | 388, 1585, 2789, 2950, 3041, 4799, 5186, 5294 |
| BmeT110I | CYCGRG | 2 cut(s) | 4686, 5063 |
| BmgBI | CACGTC | 2 cut(s) | 322, 526 |
| BmrFI | CCNGG | 9 cut(s) | 441, 671, 785, 3101, 3644, 4215, 4271, 4848, 5091 |
| BmrI | ACTGGG | 2 cut(s) | 2642, 4350 |
| BmuI | ACTGGG | 2 cut(s) | 2642, 4350 |
| BoxI | GACNNNNGTC | 2 cut(s) | 281, 393 |
| BpiI | GAAGAC | 1 cut(s) | 2213 |
| BpmI | CTGGAG | 7 cut(s) | 1338, 1640, 2489, 2871, 4131, 4434, 4746 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1683 |
| BpuEI | CTTGAG | 4 cut(s) | 480, 2981, 3353, 3966 |
| BpuMI | CCSGG | 1 cut(s) | 441 |
| Bsa29I | ATCGAT | 1 cut(s) | 147 |
| BsaAI | YACGTR | 3 cut(s) | 2549, 3308, 4754 |
| BsaHI | GRCGYC | 4 cut(s) | 249, 368, 1527, 3805 |
| BsaI | GGTCTC | 1 cut(s) | 536 |
| BsaJI | CCNNGG | 9 cut(s) | 391, 669, 1025, 1074, 2585, 3100, 3348, 4820, 4847 |
| BsaWI | WCCGGW | 3 cut(s) | 1180, 3661, 4985 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 4625, 4655, 4801, 4831 |
| Bse118I | RCCGGY | 2 cut(s) | 1597, 4985 |
| Bse3DI | GCAATG | 4 cut(s) | 712, 1437, 2446, 4937 |
| BseBI | CCWGG | 8 cut(s) | 671, 785, 3101, 3644, 4215, 4271, 4848, 5091 |
| BseCI | ATCGAT | 1 cut(s) | 147 |
| BseDI | CCNNGG | 9 cut(s) | 391, 669, 1025, 1074, 2585, 3100, 3348, 4820, 4847 |
| BseMI | GCAATG | 4 cut(s) | 712, 1437, 2446, 4937 |
| BsePI | GCGCGC | 1 cut(s) | 307 |
| BseRI | GAGGAG | 7 cut(s) | 603, 606, 1091, 1712, 2545, 4873, 4899 |
| BseSI | GKGCMC | 1 cut(s) | 2244 |
| BseYI | CCCAGC | 2 cut(s) | 2401, 3672 |
| BsgI | GTGCAG | 3 cut(s) | 334, 1181, 2297 |
| Bsh1236I | CGCG | 2 cut(s) | 309, 330 |
| BshNI | GGYRCC | 4 cut(s) | 4, 910, 1526, 4988 |
| BshTI | ACCGGT | 1 cut(s) | 4985 |
| BshVI | ATCGAT | 1 cut(s) | 147 |
| BsiHKAI | GWGCWC | 5 cut(s) | 840, 1913, 3016, 4116, 4883 |
| BsiHKCI | CYCGRG | 2 cut(s) | 4686, 5063 |
| BsiSI | CCGG | 5 cut(s) | 440, 1181, 1598, 3662, 4986 |
| BslFI | GGGAC | 9 cut(s) | 652, 1250, 1845, 1852, 2266, 2630, 2963, 3397, 4790 |
| BsmBI | CGTCTC | 2 cut(s) | 256, 516 |
| BsmFI | GGGAC | 9 cut(s) | 652, 1250, 1845, 1852, 2266, 2630, 2963, 3397, 4790 |
| BsmI | GAATGC | 3 cut(s) | 2289, 3697, 5451 |
| Bso31I | GGTCTC | 1 cut(s) | 536 |
| BsoBI | CYCGRG | 2 cut(s) | 4686, 5063 |
| Bsp1286I | GDGCHC | 8 cut(s) | 840, 1665, 1913, 2244, 3016, 4074, 4116, 4883 |
| Bsp1407I | TGTACA | 1 cut(s) | 3109 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1683 |
| BspACI | CCGC | 7 cut(s) | 255, 530, 766, 1775, 2567, 3039, 4796 |
| BspDI | ATCGAT | 1 cut(s) | 147 |
| BspFNI | CGCG | 2 cut(s) | 309, 330 |
| BspHI | TCATGA | 3 cut(s) | 2293, 3463, 4525 |
| BspMAI | CTGCAG | 1 cut(s) | 1927 |
| BspPI | GGATC | 8 cut(s) | 681, 1370, 2508, 4500, 4513, 4601, 4614, 5141 |
| BspQI | GCTCTTC | 3 cut(s) | 1623, 2139, 2677 |
| BspT107I | GGYRCC | 4 cut(s) | 4, 910, 1526, 4988 |
| BspTI | CTTAAG | 2 cut(s) | 398, 566 |
| BspTNI | GGTCTC | 1 cut(s) | 536 |
| BsrDI | GCAATG | 4 cut(s) | 712, 1437, 2446, 4937 |
| BsrFI | RCCGGY | 2 cut(s) | 1597, 4985 |
| BsrGI | TGTACA | 1 cut(s) | 3109 |
| BssAI | RCCGGY | 2 cut(s) | 1597, 4985 |
| BssECI | CCNNGG | 9 cut(s) | 391, 669, 1025, 1074, 2585, 3100, 3348, 4820, 4847 |
| BssHII | GCGCGC | 1 cut(s) | 307 |
| BssNI | GRCGYC | 4 cut(s) | 249, 368, 1527, 3805 |
| BssT1I | CCWWGG | 5 cut(s) | 391, 1025, 2585, 3348, 4820 |
| Bst2UI | CCWGG | 8 cut(s) | 671, 785, 3101, 3644, 4215, 4271, 4848, 5091 |
| BstACI | GRCGYC | 4 cut(s) | 249, 368, 1527, 3805 |
| BstAFI | CTTAAG | 2 cut(s) | 398, 566 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 4757 |
| BstAUI | TGTACA | 1 cut(s) | 3109 |
| BstBAI | YACGTR | 3 cut(s) | 2549, 3308, 4754 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 3799 |
| BstFNI | CGCG | 2 cut(s) | 309, 330 |
| BstH2I | RGCGCY | 2 cut(s) | 462, 1530 |
| BstHHI | GCGC | 7 cut(s) | 309, 311, 319, 439, 448, 461, 1529 |
| BstNI | CCWGG | 8 cut(s) | 671, 785, 3101, 3644, 4215, 4271, 4848, 5091 |
| BstNSI | RCATGY | 4 cut(s) | 1169, 3039, 3116, 3680 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 281, 393 |
| BstSCI | CCNGG | 9 cut(s) | 439, 669, 783, 3099, 3642, 4213, 4269, 4846, 5089 |
| BstSFI | CTRYAG | 7 cut(s) | 417, 748, 1923, 1968, 2832, 3405, 4161 |
| BstSLI | GKGCMC | 1 cut(s) | 2244 |
| BstSNI | TACGTA | 1 cut(s) | 3308 |
| BstUI | CGCG | 2 cut(s) | 309, 330 |
| BstV2I | GAAGAC | 1 cut(s) | 2213 |
| BstX2I | RGATCY | 4 cut(s) | 2500, 3782, 4505, 4606 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 4277 |
| BstYI | RGATCY | 4 cut(s) | 2500, 3782, 4505, 4606 |
| Bsu15I | ATCGAT | 1 cut(s) | 147 |
| BsuI | GTATCC | 1 cut(s) | 232 |
| BsuTUI | ATCGAT | 1 cut(s) | 147 |
| BtgZI | GCGATG | 2 cut(s) | 1587, 4762 |
| BtrI | CACGTC | 2 cut(s) | 322, 526 |
| CaiI | CAGNNNCTG | 3 cut(s) | 425, 4853, 5440 |
| CciI | TCATGA | 3 cut(s) | 2293, 3463, 4525 |
| CfoI | GCGC | 7 cut(s) | 309, 311, 319, 439, 448, 461, 1529 |
| Cfr10I | RCCGGY | 2 cut(s) | 1597, 4985 |
| ClaI | ATCGAT | 1 cut(s) | 147 |
| CseI | GACGC | 6 cut(s) | 259, 336, 357, 2042, 3794, 4704 |
| CsiI | ACCWGGT | 2 cut(s) | 783, 4213 |
| Csp6I | GTAC | 9 cut(s) | 911, 2116, 3110, 3309, 3337, 3987, 4218, 4951, 5079 |
| CspAI | ACCGGT | 1 cut(s) | 4985 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1302, 1337 |
| CviQI | GTAC | 9 cut(s) | 911, 2116, 3110, 3309, 3337, 3987, 4218, 4951, 5079 |
| DinI | GGCGCC | 1 cut(s) | 1528 |
| DraI | TTTAAA | 1 cut(s) | 120 |
| EaeI | YGGCCR | 1 cut(s) | 4823 |
| Ecl136II | GAGCTC | 3 cut(s) | 838, 1911, 4114 |
| Eco105I | TACGTA | 1 cut(s) | 3308 |
| Eco130I | CCWWGG | 5 cut(s) | 391, 1025, 2585, 3348, 4820 |
| Eco147I | AGGCCT | 2 cut(s) | 3099, 3778 |
| Eco24I | GRGCYC | 5 cut(s) | 840, 1665, 1913, 4074, 4116 |
| Eco31I | GGTCTC | 1 cut(s) | 536 |
| Eco32I | GATATC | 4 cut(s) | 2896, 3128, 3726, 4465 |
| Eco47I | GGWCC | 8 cut(s) | 388, 1585, 2789, 2950, 3041, 4799, 5186, 5294 |
| Eco53kI | GAGCTC | 3 cut(s) | 838, 1911, 4114 |
| Eco57I | CTGAAG | 6 cut(s) | 1539, 2145, 2312, 3870, 4329, 5383 |
| Eco72I | CACGTG | 1 cut(s) | 4754 |
| Eco88I | CYCGRG | 2 cut(s) | 4686, 5063 |
| EcoICRI | GAGCTC | 3 cut(s) | 838, 1911, 4114 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 3799 |
| EcoO109I | RGGNCCY | 3 cut(s) | 2950, 4799, 4850 |
| EcoRI | GAATTC | 2 cut(s) | 1212, 1305 |
| EcoRII | CCWGG | 8 cut(s) | 669, 783, 3099, 3642, 4213, 4269, 4846, 5089 |
| EcoRV | GATATC | 4 cut(s) | 2896, 3128, 3726, 4465 |
| EcoT14I | CCWWGG | 5 cut(s) | 391, 1025, 2585, 3348, 4820 |
| EcoT22I | ATGCAT | 2 cut(s) | 2211, 3403 |
| EcoT38I | GRGCYC | 5 cut(s) | 840, 1665, 1913, 4074, 4116 |
| EgeI | GGCGCC | 1 cut(s) | 1528 |
| EheI | GGCGCC | 1 cut(s) | 1528 |
| ErhI | CCWWGG | 5 cut(s) | 391, 1025, 2585, 3348, 4820 |
| Esp3I | CGTCTC | 2 cut(s) | 256, 516 |
| FalI | AAGNNNNNCTT | 8 cut(s) | 684, 716, 1662, 1694, 2118, 2150, 5226, 5258 |
| FaqI | GGGAC | 9 cut(s) | 652, 1250, 1845, 1852, 2266, 2630, 2963, 3397, 4790 |
| FauI | CCCGC | 2 cut(s) | 2560, 4789 |
| FauNDI | CATATG | 3 cut(s) | 1608, 2749, 5473 |
| FbaI | TGATCA | 2 cut(s) | 1510, 3718 |
| FblI | GTMKAC | 2 cut(s) | 5202, 5467 |
| FriOI | GRGCYC | 5 cut(s) | 840, 1665, 1913, 4074, 4116 |
| FspBI | CTAG | 9 cut(s) | 995, 1337, 1406, 1688, 1703, 2214, 2642, 3780, 4077 |
| FspI | TGCGCA | 1 cut(s) | 447 |
| GlaI | GCGC | 7 cut(s) | 308, 310, 318, 438, 447, 460, 1528 |
| GsaI | CCCAGC | 2 cut(s) | 2405, 3676 |
| GsuI | CTGGAG | 7 cut(s) | 1338, 1640, 2489, 2871, 4131, 4434, 4746 |
| HaeII | RGCGCY | 2 cut(s) | 462, 1530 |
| HapII | CCGG | 5 cut(s) | 440, 1181, 1598, 3662, 4986 |
| HgaI | GACGC | 6 cut(s) | 259, 336, 357, 2042, 3794, 4704 |
| HhaI | GCGC | 7 cut(s) | 309, 311, 319, 439, 448, 461, 1529 |
| Hin1I | GRCGYC | 4 cut(s) | 249, 368, 1527, 3805 |
| Hin6I | GCGC | 7 cut(s) | 307, 309, 317, 437, 446, 459, 1527 |
| HinP1I | GCGC | 7 cut(s) | 307, 309, 317, 437, 446, 459, 1527 |
| HincII | GTYRAC | 4 cut(s) | 1399, 4681, 4967, 5468 |
| HindII | GTYRAC | 4 cut(s) | 1399, 4681, 4967, 5468 |
| HindIII | AAGCTT | 6 cut(s) | 569, 698, 729, 2252, 3138, 3287 |
| HpaII | CCGG | 5 cut(s) | 440, 1181, 1598, 3662, 4986 |
| HphI | GGTGA | 5 cut(s) | 668, 2166, 3761, 4731, 4886 |
| Hpy188III | TCNNGA | 9 cut(s) | 98, 274, 841, 1091, 2294, 2927, 3464, 4262, 4526 |
| Hpy99I | CGWCG | 5 cut(s) | 358, 373, 385, 2525, 4720 |
| Hsp92I | GRCGYC | 4 cut(s) | 249, 368, 1527, 3805 |
| HspAI | GCGC | 7 cut(s) | 307, 309, 317, 437, 446, 459, 1527 |
| KasI | GGCGCC | 1 cut(s) | 1526 |
| KpnI | GGTACC | 1 cut(s) | 914 |
| Ksp22I | TGATCA | 2 cut(s) | 1510, 3718 |
| LguI | GCTCTTC | 3 cut(s) | 1623, 2139, 2677 |
| MabI | ACCWGGT | 2 cut(s) | 783, 4213 |
| MaeI | CTAG | 9 cut(s) | 995, 1337, 1406, 1688, 1703, 2214, 2642, 3780, 4077 |
| MfeI | CAATTG | 1 cut(s) | 5271 |
| MflI | RGATCY | 4 cut(s) | 2500, 3782, 4505, 4606 |
| MhlI | GDGCHC | 8 cut(s) | 840, 1665, 1913, 2244, 3016, 4074, 4116, 4883 |
| MlsI | TGGCCA | 1 cut(s) | 4825 |
| MluI | ACGCGT | 1 cut(s) | 328 |
| MluNI | TGGCCA | 1 cut(s) | 4825 |
| Mly113I | GGCGCC | 1 cut(s) | 1527 |
| MlyI | GAGTC | 8 cut(s) | 530, 1982, 3353, 3379, 3557, 4628, 5168, 5431 |
| MmeI | TCCRAC | 1 cut(s) | 2168 |
| Mox20I | TGGCCA | 1 cut(s) | 4825 |
| Mph1103I | ATGCAT | 2 cut(s) | 2211, 3403 |
| MroXI | GAANNNNTTC | 1 cut(s) | 5396 |
| MscI | TGGCCA | 1 cut(s) | 4825 |
| MslI | CAYNNNNRTG | 5 cut(s) | 86, 3077, 3426, 4876, 5038 |
| Msp20I | TGGCCA | 1 cut(s) | 4825 |
| MspA1I | CMGCKG | 2 cut(s) | 766, 3188 |
| MspCI | CTTAAG | 2 cut(s) | 398, 566 |
| MspI | CCGG | 5 cut(s) | 440, 1181, 1598, 3662, 4986 |
| MspR9I | CCNGG | 9 cut(s) | 441, 671, 785, 3101, 3644, 4215, 4271, 4848, 5091 |
| MunI | CAATTG | 1 cut(s) | 5271 |
| Mva1269I | GAATGC | 3 cut(s) | 2289, 3697, 5451 |
| MvaI | CCWGG | 8 cut(s) | 671, 785, 3101, 3644, 4215, 4271, 4848, 5091 |
| MvnI | CGCG | 2 cut(s) | 309, 330 |
| NarI | GGCGCC | 1 cut(s) | 1527 |
| NciI | CCSGG | 1 cut(s) | 441 |
| NdeI | CATATG | 3 cut(s) | 1608, 2749, 5473 |
| NmeAIII | GCCGAG | 2 cut(s) | 1099, 3144 |
| NmuCI | GTSAC | 4 cut(s) | 776, 1246, 3869, 5336 |
| NsbI | TGCGCA | 1 cut(s) | 447 |
| NsiI | ATGCAT | 2 cut(s) | 2211, 3403 |
| NspI | RCATGY | 4 cut(s) | 1169, 3039, 3116, 3680 |
| OliI | CACNNNNGTG | 2 cut(s) | 3426, 4876 |
| PaeR7I | CTCGAG | 1 cut(s) | 4686 |
| PagI | TCATGA | 3 cut(s) | 2293, 3463, 4525 |
| PauI | GCGCGC | 1 cut(s) | 307 |
| PceI | AGGCCT | 2 cut(s) | 3099, 3778 |
| PciI | ACATGT | 1 cut(s) | 3112 |
| PciSI | GCTCTTC | 3 cut(s) | 1623, 2139, 2677 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 327, 377 |
| PctI | GAATGC | 3 cut(s) | 2289, 3697, 5451 |
| PdmI | GAANNNNTTC | 1 cut(s) | 5396 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 1208, 2183, 5104 |
| PfoI | TCCNGGA | 1 cut(s) | 3642 |
| PinAI | ACCGGT | 1 cut(s) | 4985 |
| PleI | GAGTC | 8 cut(s) | 530, 1981, 3352, 3379, 3557, 4628, 5167, 5431 |
| PluTI | GGCGCC | 1 cut(s) | 1530 |
| PmaCI | CACGTG | 1 cut(s) | 4754 |
| PmlI | CACGTG | 1 cut(s) | 4754 |
| PpsI | GAGTC | 8 cut(s) | 530, 1981, 3352, 3379, 3557, 4628, 5167, 5431 |
| Ppu21I | YACGTR | 3 cut(s) | 2549, 3308, 4754 |
| PpuMI | RGGWCCY | 2 cut(s) | 2950, 4799 |
| PscI | ACATGT | 1 cut(s) | 3112 |
| PshAI | GACNNNNGTC | 2 cut(s) | 281, 393 |
| PshBI | ATTAAT | 2 cut(s) | 3453, 4440 |
| Psp124BI | GAGCTC | 3 cut(s) | 840, 1913, 4116 |
| Psp1406I | AACGTT | 1 cut(s) | 4257 |
| Psp5II | RGGWCCY | 2 cut(s) | 2950, 4799 |
| Psp6I | CCWGG | 8 cut(s) | 669, 783, 3099, 3642, 4213, 4269, 4846, 5089 |
| PspCI | CACGTG | 1 cut(s) | 4754 |
| PspFI | CCCAGC | 2 cut(s) | 2401, 3672 |
| PspGI | CCWGG | 8 cut(s) | 669, 783, 3099, 3642, 4213, 4269, 4846, 5089 |
| PspPPI | RGGWCCY | 2 cut(s) | 2950, 4799 |
| PspXI | VCTCGAGB | 1 cut(s) | 4686 |
| PstI | CTGCAG | 1 cut(s) | 1927 |
| PstNI | CAGNNNCTG | 3 cut(s) | 425, 4853, 5440 |
| PsuI | RGATCY | 4 cut(s) | 2500, 3782, 4505, 4606 |
| PteI | GCGCGC | 1 cut(s) | 307 |
| PvuII | CAGCTG | 1 cut(s) | 3188 |
| RsaI | GTAC | 9 cut(s) | 912, 2117, 3111, 3310, 3338, 3988, 4219, 4952, 5080 |
| RsaNI | GTAC | 9 cut(s) | 911, 2116, 3110, 3309, 3337, 3987, 4218, 4951, 5079 |
| RseI | CAYNNNNRTG | 5 cut(s) | 86, 3077, 3426, 4876, 5038 |
| SacI | GAGCTC | 3 cut(s) | 840, 1913, 4116 |
| SalI | GTCGAC | 1 cut(s) | 5466 |
| SapI | GCTCTTC | 3 cut(s) | 1623, 2139, 2677 |
| ScaI | AGTACT | 2 cut(s) | 2117, 3338 |
| SchI | GAGTC | 8 cut(s) | 530, 1982, 3353, 3379, 3557, 4628, 5168, 5431 |
| ScrFI | CCNGG | 9 cut(s) | 441, 671, 785, 3101, 3644, 4215, 4271, 4848, 5091 |
| SduI | GDGCHC | 8 cut(s) | 840, 1665, 1913, 2244, 3016, 4074, 4116, 4883 |
| SexAI | ACCWGGT | 2 cut(s) | 783, 4213 |
| SfcI | CTRYAG | 7 cut(s) | 417, 748, 1923, 1968, 2832, 3405, 4161 |
| SfoI | GGCGCC | 1 cut(s) | 1528 |
| Sfr274I | CTCGAG | 1 cut(s) | 4686 |
| SinI | GGWCC | 8 cut(s) | 388, 1585, 2789, 2950, 3041, 4799, 5186, 5294 |
| SlaI | CTCGAG | 1 cut(s) | 4686 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 86, 3077, 3426, 4876, 5038 |
| SmlI | CTYRAG | 7 cut(s) | 398, 495, 566, 2996, 3332, 3981, 4686 |
| SmoI | CTYRAG | 7 cut(s) | 398, 495, 566, 2996, 3332, 3981, 4686 |
| SnaBI | TACGTA | 1 cut(s) | 3308 |
| SseBI | AGGCCT | 2 cut(s) | 3099, 3778 |
| SsiI | CCGC | 7 cut(s) | 255, 530, 766, 1775, 2567, 3039, 4796 |
| SspDI | GGCGCC | 1 cut(s) | 1526 |
| SspMI | CTAG | 9 cut(s) | 995, 1337, 1406, 1688, 1703, 2214, 2642, 3780, 4077 |
| SstI | GAGCTC | 3 cut(s) | 840, 1913, 4116 |
| StuI | AGGCCT | 2 cut(s) | 3099, 3778 |
| StyD4I | CCNGG | 9 cut(s) | 439, 669, 783, 3099, 3642, 4213, 4269, 4846, 5089 |
| StyI | CCWWGG | 5 cut(s) | 391, 1025, 2585, 3348, 4820 |
| TaqII | GACCGA | 1 cut(s) | 560 |
| TatI | WGTACW | 4 cut(s) | 2115, 3109, 3336, 5078 |
| TseFI | GTSAC | 4 cut(s) | 776, 1246, 3869, 5336 |
| Tsp45I | GTSAC | 4 cut(s) | 776, 1246, 3869, 5336 |
| TspGWI | ACGGA | 5 cut(s) | 2604, 4015, 4366, 4463, 5389 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 1208, 2183, 5104 |
| Vha464I | CTTAAG | 2 cut(s) | 398, 566 |
| VpaK11BI | GGWCC | 8 cut(s) | 388, 1585, 2789, 2950, 3041, 4799, 5186, 5294 |
| VspI | ATTAAT | 2 cut(s) | 3453, 4440 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 3799 |
| XapI | RAATTY | 9 cut(s) | 126, 196, 1010, 1212, 1305, 3273, 3973, 4156, 4672 |
| XceI | RCATGY | 4 cut(s) | 1169, 3039, 3116, 3680 |
| XhoI | CTCGAG | 1 cut(s) | 4686 |
| XmiI | GTMKAC | 2 cut(s) | 5202, 5467 |
| XmnI | GAANNNNTTC | 1 cut(s) | 5396 |
| XspI | CTAG | 9 cut(s) | 995, 1337, 1406, 1688, 1703, 2214, 2642, 3780, 4077 |
| ZraI | GACGTC | 1 cut(s) | 250 |
| ZrmI | AGTACT | 2 cut(s) | 2117, 3338 |
| Zsp2I | ATGCAT | 2 cut(s) | 2211, 3403 |