Rorug01G0271200

Clustered mitochondria protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007431
Physical Location & Seq
Reverse (-)
38379037 .. 38380223
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0271200.1

Sequence Viewer

Length: 600 bp
ATGCACACCCTTGAGTGGGAAAAAAATTTGGTTGCCGAGGATGATGACCTTCTGAGCTATTTGGCTATGAGGATTCTGTTAAAGGTGGGAGCAACTGTGAAGCTTTGTGAAAATGGAGGAGAAGCTCCAGATATGCCAGAAATGGATGGATTTGAGGCAACAAGGGAGATAAGGAAAGTGGAGAAAACTCACCATGTCCGCATTCTGATCATTGCATTAACAGCTCATACACCAGGCGAGGAAACAAGAAGGATGTTGGAGGCTGGCATGGATCACTATTTGAGCAAACCCTTGGAAAAGGGTCGTCTACTTGAAACAATGGGTAGACTGGTGGGGAATGCCATTGCTATGTATAATGCACAGATAGGCAGGAAAGGCAGGAGTTCAGTTCTGTGGAAGAATTTAGCAGGTATTCCTCCCCAACCTAGCTCTACGGAGTGTGGCTACTTCATGATGAGATACATGCGAGATATAATTGAAGATAAGGATCTATCGTTTGTTCACAAGTGGGAGAGGAGAAGCAACTACATGTATAGCCAAGAGGACATTGATGTAATCCGGAATGAGTGGGCAAAATTTGTCGTCAAGTCATATATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU_N TPR_12 eIF3_p135

Protein Analysis

199

Amino Acids

23.03

Weight (kDa)

6.32

Isoelectric Point (pI)

49.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 44 - 106 7.5e-11 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 398
AccI GTMKAC 2 cut(s) 307, 325
AccIII TCCGGA 1 cut(s) 558
AciI CCGC 1 cut(s) 199
AclWI GGATC 2 cut(s) 279, 495
AcsI RAATTY 3 cut(s) 25, 400, 575
AfiI CCNNNNNNNGG 2 cut(s) 15, 16
AflIII ACRYGT 1 cut(s) 528
AgsI TTSAA 2 cut(s) 314, 479
AjnI CCWGG 1 cut(s) 232
AluBI AGCT 5 cut(s) 57, 103, 125, 224, 429
AluI AGCT 5 cut(s) 57, 103, 125, 224, 429
AlwI GGATC 2 cut(s) 279, 495
Aor13HI TCCGGA 1 cut(s) 558
ApoI RAATTY 3 cut(s) 25, 400, 575
AsuHPI GGTGA 1 cut(s) 182
BccI CCATC 1 cut(s) 140
BciT130I CCWGG 1 cut(s) 234
BclI TGATCA 1 cut(s) 207
BfaI CTAG 1 cut(s) 426
BfuAI ACCTGC 1 cut(s) 398
Bme1390I CCNGG 1 cut(s) 234
BmrFI CCNGG 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 111
BpuEI CTTGAG 1 cut(s) 32
BsaBI GATNNNNATC 1 cut(s) 486
BsaJI CCNNGG 2 cut(s) 36, 291
BsaWI WCCGGW 1 cut(s) 558
BsaXI ACNNNNNCTCC 2 cut(s) 81, 111
Bsc4I CCNNNNNNNGG 2 cut(s) 15, 16
Bse1I ACTGG 1 cut(s) 333
Bse3DI GCAATG 2 cut(s) 210, 342
Bse8I GATNNNNATC 1 cut(s) 486
BseAI TCCGGA 1 cut(s) 558
BseBI CCWGG 1 cut(s) 234
BseDI CCNNGG 2 cut(s) 36, 291
BseGI GGATG 3 cut(s) 46, 151, 258
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 2 cut(s) 15, 16
BseMI GCAATG 2 cut(s) 210, 342
BseMII CTCAG 1 cut(s) 44
BseNI ACTGG 1 cut(s) 333
BseRI GAGGAG 2 cut(s) 132, 529
BsiSI CCGG 1 cut(s) 559
BslI CCNNNNNNNGG 2 cut(s) 15, 16
BsmI GAATGC 2 cut(s) 201, 343
Bsp13I TCCGGA 1 cut(s) 558
Bsp143I GATC 3 cut(s) 207, 271, 487
BspACI CCGC 1 cut(s) 199
BspCNI CTCAG 1 cut(s) 45
BspEI TCCGGA 1 cut(s) 558
BspHI TCATGA 1 cut(s) 450
BspMI ACCTGC 1 cut(s) 398
BspPI GGATC 2 cut(s) 279, 495
BsrDI GCAATG 2 cut(s) 210, 342
BsrI ACTGG 1 cut(s) 333
BssECI CCNNGG 2 cut(s) 36, 291
BssMI GATC 3 cut(s) 207, 271, 487
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 97
BstC8I GCNNGC 1 cut(s) 265
BstDEI CTNAG 1 cut(s) 53
BstF5I GGATG 3 cut(s) 46, 151, 258
BstKTI GATC 3 cut(s) 210, 274, 490
BstMBI GATC 3 cut(s) 207, 271, 487
BstMWI GCNNNNNNNGC 2 cut(s) 221, 375
BstNI CCWGG 1 cut(s) 234
BstNSI RCATGY 2 cut(s) 466, 532
BstSCI CCNGG 1 cut(s) 232
BstX2I RGATCY 1 cut(s) 487
BstYI RGATCY 1 cut(s) 487
BtsCI GGATG 3 cut(s) 46, 151, 258
BveI ACCTGC 1 cut(s) 398
Cac8I GCNNGC 1 cut(s) 265
CciI TCATGA 1 cut(s) 450
CviAII CATG 5 cut(s) 194, 268, 451, 463, 529
CviJI RGCY 9 cut(s) 57, 65, 103, 125, 224, 263, 429, 444, 537
CviKI_1 RGCY 9 cut(s) 57, 65, 103, 125, 224, 263, 429, 444, 537
DdeI CTNAG 1 cut(s) 53
DpnI GATC 3 cut(s) 209, 273, 489
DpnII GATC 3 cut(s) 207, 271, 487
Eco130I CCWWGG 1 cut(s) 291
EcoRII CCWGG 1 cut(s) 232
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 5 cut(s) 197, 271, 454, 466, 532
FatI CATG 5 cut(s) 193, 267, 450, 462, 528
FbaI TGATCA 1 cut(s) 207
FblI GTMKAC 2 cut(s) 307, 325
FokI GGATG 3 cut(s) 53, 158, 265
FspBI CTAG 1 cut(s) 426
GsuI CTGGAG 1 cut(s) 111
HapII CCGG 1 cut(s) 559
Hin1II CATG 5 cut(s) 197, 271, 454, 466, 532
HindIII AAGCTT 1 cut(s) 101
HinfI GANTC 1 cut(s) 73
HpaII CCGG 1 cut(s) 559
HphI GGTGA 1 cut(s) 182
Hpy166II GTNNAC 3 cut(s) 308, 326, 502
Hpy188I TCNGA 2 cut(s) 54, 207
Hpy188III TCNNGA 3 cut(s) 128, 451, 559
Hpy8I GTNNAC 3 cut(s) 308, 326, 502
HpyAV CCTTC 2 cut(s) 59, 243
HpyCH4III ACNGT 1 cut(s) 97
HpyCH4V TGCA 3 cut(s) 4, 215, 359
HpyF10VI GCNNNNNNNGC 2 cut(s) 221, 375
HpyF3I CTNAG 1 cut(s) 53
Hsp92II CATG 5 cut(s) 197, 271, 454, 466, 532
Kpn2I TCCGGA 1 cut(s) 558
Ksp22I TGATCA 1 cut(s) 207
Kzo9I GATC 3 cut(s) 207, 271, 487
LmnI GCTCC 2 cut(s) 89, 130
MaeI CTAG 1 cut(s) 426
MalI GATC 3 cut(s) 209, 273, 489
MboI GATC 3 cut(s) 207, 271, 487
MboII GAAGA 2 cut(s) 409, 491
MflI RGATCY 1 cut(s) 487
MluCI AATT 4 cut(s) 25, 400, 474, 575
MmeI TCCRAC 1 cut(s) 237
MnlI CCTC 9 cut(s) 31, 63, 110, 148, 232, 253, 426, 507, 535
MroI TCCGGA 1 cut(s) 558
MseI TTAA 2 cut(s) 80, 218
MslI CAYNNNNRTG 1 cut(s) 347
MspI CCGG 1 cut(s) 559
MspR9I CCNGG 1 cut(s) 234
Mva1269I GAATGC 2 cut(s) 201, 343
MvaI CCWGG 1 cut(s) 234
MwoI GCNNNNNNNGC 2 cut(s) 221, 375
NdeII GATC 3 cut(s) 207, 271, 487
NlaIII CATG 5 cut(s) 197, 271, 454, 466, 532
NmeAIII GCCGAG 1 cut(s) 61
NspI RCATGY 2 cut(s) 466, 532
PagI TCATGA 1 cut(s) 450
PciI ACATGT 1 cut(s) 528
PctI GAATGC 2 cut(s) 201, 343
PfeI GAWTC 1 cut(s) 73
PscI ACATGT 1 cut(s) 528
Psp6I CCWGG 1 cut(s) 232
PspGI CCWGG 1 cut(s) 232
PsuI RGATCY 1 cut(s) 487
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 2 cut(s) 80, 218
Sau3AI GATC 3 cut(s) 207, 271, 487
ScrFI CCNGG 1 cut(s) 234
SetI ASST 9 cut(s) 51, 59, 87, 105, 127, 226, 412, 427, 431
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 11
SmoI CTYRAG 1 cut(s) 11
Sse9I AATT 4 cut(s) 25, 400, 474, 575
SsiI CCGC 1 cut(s) 199
SspMI CTAG 1 cut(s) 426
StyD4I CCNGG 1 cut(s) 232
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 97
TasI AATT 4 cut(s) 25, 400, 474, 575
TfiI GAWTC 1 cut(s) 73
Tru1I TTAA 2 cut(s) 80, 218
Tru9I TTAA 2 cut(s) 80, 218
TspDTI ATGAA 1 cut(s) 439
TspGWI ACGGA 1 cut(s) 449
XapI RAATTY 3 cut(s) 25, 400, 575
XceI RCATGY 2 cut(s) 466, 532
XmiI GTMKAC 2 cut(s) 307, 325
XspI CTAG 1 cut(s) 426
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.