Rh1DG279700

Clustered mitochondria protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0007431
Physical Location & Seq
Forward (+)
50099424 .. 50113105
13682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG279700.1

Sequence Viewer

Length: 5589 bp
ATGGCACCCAGAAACAGTCGTGGAAAGGGCAAAGGTGGAGAGAAGAAGAAGAAGGAAGAGAAGGTTCTTCCTGTTGTGATGGACATCACAGTGAACCTTCCAGATGAAAGCAGTGTTGTTTTGAAGGGAATATCGACGGACAGGATCATCGACGTTCGCCAACTATTATCAGTCAACACAGAAACTTGTAACATCACCAATTTTTCACTATCCCATGAGGTAAGAGGGAAACGTTTAAAAGATACGGTGGACGTCTCCGCACTCAAGCCATGCGTCATCACCTTGGTCGAAGAGGACTATGATGAAGAGCTCGCCACCGCGCACGTGCGGCGCGTGCTGGACATCGTGGCCTGCACGACGGGCTTTGGCGCGTCACCGACGCCTCCGCCGACTCCGGCGAAGGACCAAAGCCTCAAGCCTGACGCCTCGTCCGCAGTCCTCTCCGGTAAAAATACGCAGGATAATAAGACCGCCAAGAAATCCACCGCCACCGCCGCCGCCACCGGGGCCAAGCCTCAAGGCTCTGCCGGAGCAGATAAGCGTGACGTGGCGGTCGACTCGGACGCCGAGCTGAGCCACTCTTGCCTCAAGCTCGGTTCTTTCTACGACTTCTTCTCTCTCGCTCATCTCACTCCCCCTCTGCAATTTATCCGAAGGGTGACGAAACGACATGTCGATGAGATTTCCGGCGATGATCACCTGTTTTCTCTTGAAGTGAAGCTCTGCAATGGGAAGGTGGTTCTGGTTGAAGCTTGCAGAAAGGGATTCTATAGTGTAGGGAAGCAGCGCATTATGTGTCACAACCTCGTCGATTTGCTACGCCAGCTTAGTAGAGCTTTTGACAATGCTTACGATGATCTGCTGAAAGCATTTTCGGAACGTAATAAGTTTGGGAATCTTCCCTATGGCTTTCGAGCAAACACATGGCTTGTACCGCCTATTGCAGGGCAGTCGCCTTCAGGTTTCCCTGCTCTTCCTGTGGAGGATGAAGCTTGGGGAGGAAATGGAGGGGGTCTAGGAAGGGATGGGCAATTTGATCTGATTCCTTGGGCTAATGAGTTTTGGTATATTGCATCTATGCCTTGCAAGACGGCGGAGGAGAGGCAGGTTCGAGATAGGAAGGCATTCCTTCTTCACAGCCTATTTGTCGACGTTTCCATTTTTAGAGCCATTAAGGCTGTGCAGCATGTGATGGCAAAGCCGGAATTAACATGTTCAGCTGCAAACAGTGAGGTTCTTTATACTGAGAGAGTAGGGGACCTGAATGTGATAGTAACAAAGGATGTTAACAATGCGAGCTGTAAGGTTGATACTAAAATTGATGGAATTCAGGCAACTGGAGTGGATAAAAAGAATCTAGCACAACGAAACCTTCTTAAAGGGATCACTGCTGACGAGAACACCGCTGCACATGATGTCACCACTCTAGGTGTTGTCAATGTCCGATATTGTGGTCACATTGCAGTTGTGAAAGTTGAGGGCAAAGAAACTAAGAAAGTCAGTTCTCCATCCCAAAGCATTGACCTCCTTGATCAACCTGAAGGTGGTGCCAATGCCCTTAATATCAACAGTTTAAGATTACTACTTCACACTACTACACCTTCAGAGCAGAATAAACTGGCATCACATGGCCAAGGCCTGGAACATGAAGAGCTTTCTGCTTCCTGCGCTTTTGTTGAGAAGCTATTAGAAGAAAGTCTTGCTAAGCTTGACAAAGAGGAGCTAGATTCTGATAGTTTTGTGAGATGGGAACTAGGAGCTTGCTGGATACAACACTTGCAAGACCAAAAAAATACAGACAAGGATAAGAAACCATTGGGTGAGAAGGCTAAGAATGAGATGAAGGTCGAGGGACTTGGGACACCTCTTAAATCCCTTAAGAACACGAAGAAGAAATCAGATGGAGCCAATATTAAAGTGCAGTCTGATAGCTCAAAGTCGCATGCAGATGGTGTTGTGGGAGAAGTAGAAAATGCTATAGGTTCTGTGGAATCAAAGTTTGAAATCAGTGCTAAAGAAAATGAGCTTGTGCTGACTGAGATGCTCTCTGACGCAGCCTTTGCTCGACTAAAAGAATCAGAAACTGGACTTCATTGCAAGTCTCTGCAAGAACTGATCGACTTATCTCAGAAGTATTACTCTGAAGTTGCTCTTCCAAAACTGGTAGCTGATTTTGGTTCATTGGAACTTTCACCAGTTGATGGTCGAACTTTAACTGATTTCATGCATACTAGAGGTCTTCGGATGCGTTCTCTGGGGCAAGTTGTCAAGCTATCGGAGAAGCTATCACATGTGCAGTCCCTTTGCATTCATGAGATGATAGTGCGAGCTTTTAAGCACATACTTCAGGCAGTGATTGCTGCTGTTAATAACACTGAGAAAATGGCTGCCTCGATTGCTGCTGCATTGAATCTTATGTTGGGGGCTTCAGAAAATGAAGAATTCAATAAGTCTTTCAATGTGCATTCCCTTGTGTGGAGATGGCTGGAAGTATTCTTGCGAAAGAGATATGGATGGGATGTTAGCAGCTTCAACTACAATGATGTGAGGAGATTTGCAATTCTACGTGGCCTGTGTCATAAGGTGGGCATTGAGATGGTTCCACGAGATTTTGATATGGAGTCTCCAAATCCATTTCAGAGTTCTGATATTGTCAGCTTAGTTCCGGTACATAAGCAAGCTGCATGCTCTTCGGCGGATGGTAGGCAACTATTGGAGTCATCAAAAACAGCCTTAGATAAGGGAAAACTTGAAGATGCAGTTGCATATGGCACTAAGGCTCTTGCAAAGCTGGTAGCAGTTTGTGGTCCATACCATCGAATGACAGCAGGAGCTTACAGCCTCCTTGCTGTAGTTTTATATCACACTGGAGATTTTAATCAGGCTACAATTTATCAGCAAAAGGCTCTGGATATCAATGAGAGAGAATTAGGGCTTGACCATCCAGACACCATGAAGAGTTATGGGGATCTTGCTGTGTTCTATTACAGACTTCAACATACAGAGCTGGCTCTCAAATATGTAAAACGTGCTCTATATCTCTTGCATCTCACATGTGGACCATCTCATCCAAACACTGCTGCAACATACATCAACGTGGCTATGATGGAAGAAGGCCTGGGAAATGTACATGTTGCTCTCAGATATCTACACAAGGCTTTGAAGTGTAATCAGAAGTTACTTGGCCCAGATCATATTCAGACAGCGGCTAGTTACCATGCTATTGCAATTGCACTCTCATTGATGGAAGCATACCCTTTAAGTGTTCAGCATGAGCAGACAACATTGCAAATTCTGCGTGCAAAGCTTGGACCAGATGATCTACGTACACAAGATGCTGCTGCCTGGCTTGAGTACTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCAAGAAATGGGACTCGAAAACCAGATGCATCTATAGCCAGCAAAGGCCACTTAAGCGTATCAGATTTGCTTGACTACATCAATCCCACTCATGATGCTAAAGGGAGAGATGCGGCAATGAAGAGGAAAACCTACATAACAAAGTTGAAGGAAAAATCCTATCAAACTATCAGCTCAGCAAGTTCTGACGAATCTTCAAAAGAAACCACAAACGAGGTTTCAGACGAAGAAACACATACACTTGAACCAAGAGAAAGAACAGATCCCATCCAAGAAAACATCCCGGCTTCAGTTGAACCCCAGCATGTTGTAGAAGAGACTCCTGAGGAAAATTCAAACATGAGCTCTTCTGAAACACATGTTGAAGGGGAAGATGACTGGCAACCAGTTCAAAGGCCTAGATCAGCGGGTTCATATGGGCGGCGTGTAAAGCAGCGGCGGGCAGCTATTGGGAAGGTTTATAGTTACCAGAAGAAATATGTAGACACTGATATGGATTACCCTTCAGTGAAGAATACTAACCAAAACAGTAGGTATTACCTTATAAAGAAAAAGCCAACATCTCATGGAAGTTATACAGAAAATCAGATTGCGAATCCCTCCCAAGGTACTAAATTTGGACGGAGAATGGTAAAAGCTGTAGCATACAGAGTCAAGTCTATGCCTTCGTCTACCAAAGTTGTTGCAGCAGAAAGTTTGAGTTCCTCATCAGAAGTCAGTCCAAATGTTTCACCGCATGGGATTGGTCCAGTTAAAGGTTCTATAGTCAGTCTTGGAAAATCTCCTTCATACAAGGAAGTAGCATTGGCTCCACCAGGTAGTATTGCTAAAATGCAAACTGTTTTCCCTCAGAATGGCATTCCAGATAACCACGAGCATGGTATCCAAAGACAAGAAGAGGAAATAATTGAAATCAAAGGAGATTCCAAACCAAAGGCTGTAGTTGAAACTATACTTGAAGAAAAGAAGGATCCTGTATTGGTTTCCACAGATGTGTTACGAGAGCAAACTGGACCTGTTGAGAAGAAAGAAGATACTAATTCACCTGAAGTGAAGGAAGATAAAAATTCACTGATATTCGGGACCGTGGATGAACTTGGATCCAGTGCTGTTAAGTTTCAAGAGGCAGCAGTTGATAACGTATTAGTTGATGGACTGCCAAAATCCATTGATTCTGCCAAGGAGGGACTCTGTGAGAACAATCCATCTGGCACTTCTGAATTGCATGATTCCAACTCCACTTTGCAAGGAGTAGATGATTTGGAGGCATCCTCGCTTGTTACTTCAGCTGATACTCGGGGATTGCCAAATAAGAAGTTATCTGCATCGGCAGCTCCATTCAATCCCTCACCATCCACTCGTGCTGCTCCGGTTCCCATGAACATTGCTATACCTTCTGGTGCGGGTTCTGTCCCAACTATTGCACCTTGGCCAGTAAACCTGAATATTCACCCAGGGGCAGCTACTGTCTTACCCACAGTTAATCCCATGTGCTCCTCTCCTCATCATCCATACCCTTCTCCCCCTGCTACCCCGAATATCATACAGCCATTGCCATTTATGTTCCCTCCTCCTTACAGTCAACCCCAAGTTGTACGAACCAGTACCTTTCCTGTGACTAGTGCATTTCATCCAAATCATTACACATGGCAGTGCAATGTGAATCCTAATGTATCCGAGTTTGTACCTACAACAGTTTGGCATGGTTGCCATCCAATGGAATTCTCTGCCCCAGCACCTGTTGTTGAGCCAATTTCTGATCCCTCTCCCTTGGAGTCAAAAATTCAGAACGATGATTCTGCTCCAGTTCTGCCAGTGGACATTGATAATGTGGGGGAAACTAAGAAAGAAGTGGACATTCTAACATCAGAGGCAACTTGTAATCCAATTGAAAGTGTCAAGGAAGTTGGTCCAGATCTTTGTGGGGTTGAGAATGCTCAGAACAAACCATGTGACAGCCCAAATGGAAAAGTTGGAAGTAGCACTGAAAGGACGACTGATGGAGACAAAACCTTCAGCATTTTGATAAGGGGAAGAAGAAACCGAAAGCAGACTCTGAGAATGCCAGTAAGTTTGCTCAGTCGACCATATGGCTCACAGTCATTCAAAGTCATATATAACAGGGTGGTCAGGGGGAATGATGCGTCCAAACCCATCAGCTTTTCATCTAGTGAAAACTGCACAGCTACTGCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU_N TPR_12 eIF3_p135

Protein Analysis

1862

Amino Acids

203.76

Weight (kDa)

6.33

Isoelectric Point (pI)

43.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLU_N PF15044 46 - 116 3.4e-10 Mitochondrial function, CLU-N-term
eIF3_p135 PF12807 730 - 872 1.2e-24 Translation initiation factor eIF3 subunit 135
TPR_12 PF13424 912 - 974 2.3e-07 Tetratricopeptide repeat
TPR_NPHP3 PF24885 914 - 1012 1.8e-07 Nephrocystin-3 TPR domain
TPR_10 PF13374 942 - 983 2.1e-09 Tetratricopeptide repeat
TPR_12 PF13424 942 - 1012 1.5e-12 Tetratricopeptide repeat
TPR_10 PF13374 1026 - 1066 3.4e-07 Tetratricopeptide repeat
TPR_12 PF13424 1026 - 1100 5.3e-12 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 3935
AasI GACNNNNNNGTC 1 cut(s) 551
AatII GACGTC 1 cut(s) 255
Acc36I ACCTGC 1 cut(s) 1096
AccB1I GGYRCC 2 cut(s) 4, 1547
AccB7I CCANNNNNTGG 3 cut(s) 1639, 2201, 5107
AccI GTMKAC 5 cut(s) 555, 1149, 3873, 4061, 5473
AccII CGCG 3 cut(s) 320, 333, 371
AclI AACGTT 1 cut(s) 232
AclWI GGATC 9 cut(s) 152, 1391, 2976, 3647, 4355, 4368, 4485, 4498, 5144
AcoI YGGCCR 2 cut(s) 1630, 4820
AcsI RAATTY 8 cut(s) 1326, 2441, 3291, 3721, 4004, 4456, 5111, 5172
AcvI CACGTG 1 cut(s) 325
AcyI GRCGYC 4 cut(s) 252, 380, 423, 564
AfaI GTAC 9 cut(s) 933, 2670, 3129, 3328, 3356, 4000, 4986, 4996, 5076
AflII CTTAAG 2 cut(s) 1877, 3442
AflIII ACRYGT 6 cut(s) 670, 1211, 2290, 3053, 3130, 3748
AhdI GACNNNNNGTC 1 cut(s) 427
AhlI ACTAGT 1 cut(s) 5009
AjiI CACGTC 1 cut(s) 547
AjnI CCWGG 5 cut(s) 1638, 3117, 3344, 4204, 4843
AjuI GAANNNNNNNTTGG 2 cut(s) 2402, 2434
AleI CACNNNNGTG 1 cut(s) 4382
Alw21I GWGCWC 4 cut(s) 312, 3034, 3737, 4886
Alw26I GTCTC 5 cut(s) 259, 2106, 2628, 3701, 5388
AlwI GGATC 9 cut(s) 152, 1391, 2976, 3647, 4355, 4368, 4485, 4498, 5144
AlwNI CAGNNNCTG 5 cut(s) 2084, 4856, 5129, 5446, 5579
Ama87I CYCGRG 1 cut(s) 4686
ApoI RAATTY 8 cut(s) 1326, 2441, 3291, 3721, 4004, 4456, 5111, 5172
ArsI GACNNNNNNTTYG 2 cut(s) 2042, 2074
Asp700I GAANNNNTTC 1 cut(s) 1124
AspLEI GCGC 5 cut(s) 322, 333, 371, 789, 1670
AsuC2I CCSGG 2 cut(s) 505, 3674
AvaI CYCGRG 1 cut(s) 4686
AvaII GGWCC 9 cut(s) 403, 1258, 2807, 3059, 3311, 4136, 4403, 4473, 5300
AxyI CCTNAGG 1 cut(s) 3714
BalI TGGCCA 2 cut(s) 1632, 4822
BamHI GGATCC 2 cut(s) 4360, 4490
BanI GGYRCC 2 cut(s) 4, 1547
BanII GRGCYC 2 cut(s) 312, 3737
BauI CACGAG 3 cut(s) 2604, 4262, 4749
BbrPI CACGTG 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 2231
Bbv12I GWGCWC 4 cut(s) 312, 3034, 3737, 4886
BceAI ACGGC 1 cut(s) 1107
BcgI CGANNNNNNTGC 6 cut(s) 933, 967, 2673, 2707, 5171, 5205
BciT130I CCWGG 5 cut(s) 1640, 3119, 3346, 4206, 4845
BciVI GTATCC 3 cut(s) 1761, 4283, 5074
BclI TGATCA 2 cut(s) 694, 1531
BcnI CCSGG 2 cut(s) 505, 3674
BcoDI GTCTC 5 cut(s) 259, 2106, 2628, 3701, 5388
BcuI ACTAGT 1 cut(s) 5009
BfmI CTRYAG 7 cut(s) 769, 1977, 2850, 3423, 4029, 4152, 4329
BfrI CTTAAG 2 cut(s) 1877, 3442
BfuAI ACCTGC 1 cut(s) 1096
BfuI GTATCC 3 cut(s) 1761, 4283, 5074
BglI GCCNNNNNGGC 2 cut(s) 506, 1175
BglII AGATCT 1 cut(s) 5305
BlpI GCTNAGC 3 cut(s) 572, 1704, 3565
BmcAI AGTACT 1 cut(s) 3356
Bme1390I CCNGG 7 cut(s) 505, 1640, 3119, 3346, 3674, 4206, 4845
Bme18I GGWCC 9 cut(s) 403, 1258, 2807, 3059, 3311, 4136, 4403, 4473, 5300
BmeRI GACNNNNNGTC 1 cut(s) 427
BmeT110I CYCGRG 1 cut(s) 4686
BmgBI CACGTC 1 cut(s) 547
BmrFI CCNGG 7 cut(s) 505, 1640, 3119, 3346, 3674, 4206, 4845
BpiI GAAGAC 1 cut(s) 2231
BplI GAGNNNNNCTC 4 cut(s) 2030, 2062, 4646, 4678
BpmI CTGGAG 3 cut(s) 1359, 2889, 5178
Bpu1102I GCTNAGC 3 cut(s) 572, 1704, 3565
BpuEI CTTGAG 5 cut(s) 248, 398, 501, 572, 3371
BpuMI CCSGG 2 cut(s) 505, 3674
BsaAI YACGTR 3 cut(s) 325, 2567, 3326
BsaBI GATNNNNATC 2 cut(s) 83, 2877
BsaHI GRCGYC 4 cut(s) 252, 380, 423, 564
BsaWI WCCGGW 3 cut(s) 443, 2665, 4759
Bse21I CCTNAGG 1 cut(s) 3714
Bse3DI GCAATG 8 cut(s) 733, 1458, 2092, 3284, 3513, 4773, 4940, 5053
Bse8I GATNNNNATC 2 cut(s) 83, 2877
BseBI CCWGG 5 cut(s) 1640, 3119, 3346, 4206, 4845
BseJI GATNNNNATC 2 cut(s) 83, 2877
BseMI GCAATG 8 cut(s) 733, 1458, 2092, 3284, 3513, 4773, 4940, 5053
BseRI GAGGAG 6 cut(s) 1112, 1733, 2563, 4876, 4881, 4950
BseYI CCCAGC 2 cut(s) 3690, 5122
BsgI GTGCAG 6 cut(s) 337, 1202, 1392, 1940, 2315, 5554
Bsh1236I CGCG 3 cut(s) 320, 333, 371
Bsh1285I CGRYCG 1 cut(s) 555
BshNI GGYRCC 2 cut(s) 4, 1547
BsiEI CGRYCG 1 cut(s) 555
BsiHKAI GWGCWC 4 cut(s) 312, 3034, 3737, 4886
BsiHKCI CYCGRG 1 cut(s) 4686
BsiSI CCGG 9 cut(s) 395, 444, 504, 528, 687, 1202, 2666, 3674, 4760
BslFI GGGAC 8 cut(s) 1271, 1866, 1873, 2284, 3415, 4486, 4590, 4787
BsmAI GTCTC 5 cut(s) 259, 2106, 2628, 3701, 5388
BsmBI CGTCTC 1 cut(s) 259
BsmFI GGGAC 8 cut(s) 1271, 1866, 1873, 2284, 3415, 4486, 4590, 4787
BsmI GAATGC 6 cut(s) 1124, 2307, 2464, 4248, 5329, 5457
BsoBI CYCGRG 1 cut(s) 4686
Bsp1286I GDGCHC 4 cut(s) 312, 3034, 3737, 4886
Bsp1407I TGTACA 1 cut(s) 3127
Bsp1720I GCTNAGC 3 cut(s) 572, 1704, 3565
BspFNI CGCG 3 cut(s) 320, 333, 371
BspHI TCATGA 2 cut(s) 2311, 3481
BspMI ACCTGC 1 cut(s) 1096
BspPI GGATC 9 cut(s) 152, 1391, 2976, 3647, 4355, 4368, 4485, 4498, 5144
BspQI GCTCTTC 6 cut(s) 300, 978, 1644, 2157, 2695, 3742
BspT107I GGYRCC 2 cut(s) 4, 1547
BspTI CTTAAG 2 cut(s) 1877, 3442
BsrDI GCAATG 8 cut(s) 733, 1458, 2092, 3284, 3513, 4773, 4940, 5053
BsrGI TGTACA 1 cut(s) 3127
BssNI GRCGYC 4 cut(s) 252, 380, 423, 564
BssSI CACGAG 3 cut(s) 2604, 4262, 4749
BssT1I CCWWGG 8 cut(s) 282, 1046, 1633, 3366, 3994, 4569, 4817, 5160
Bst2BI CACGAG 3 cut(s) 2604, 4262, 4749
Bst2UI CCWGG 5 cut(s) 1640, 3119, 3346, 4206, 4845
BstACI GRCGYC 4 cut(s) 252, 380, 423, 564
BstAFI CTTAAG 2 cut(s) 1877, 3442
BstAPI GCANNNNNTGC 3 cut(s) 2060, 2357, 3295
BstAUI TGTACA 1 cut(s) 3127
BstBAI YACGTR 3 cut(s) 325, 2567, 3326
BstDSI CCRYGG 1 cut(s) 4476
BstENI CCTNNNNNAGG 1 cut(s) 942
BstFNI CGCG 3 cut(s) 320, 333, 371
BstHHI GCGC 5 cut(s) 322, 333, 371, 789, 1670
BstMAI GTCTC 5 cut(s) 259, 2106, 2628, 3701, 5388
BstMCI CGRYCG 1 cut(s) 555
BstNI CCWGG 5 cut(s) 1640, 3119, 3346, 4206, 4845
BstSCI CCNGG 7 cut(s) 503, 1638, 3117, 3344, 3672, 4204, 4843
BstSFI CTRYAG 7 cut(s) 769, 1977, 2850, 3423, 4029, 4152, 4329
BstSNI TACGTA 1 cut(s) 3326
BstUI CGCG 3 cut(s) 320, 333, 371
BstV2I GAAGAC 1 cut(s) 2231
BstX2I RGATCY 5 cut(s) 2968, 3652, 4360, 4490, 5305
BstXI CCANNNNNNTGG 1 cut(s) 4268
BstYI RGATCY 5 cut(s) 2968, 3652, 4360, 4490, 5305
Bsu36I CCTNAGG 1 cut(s) 3714
BsuI GTATCC 3 cut(s) 1761, 4283, 5074
BtgI CCRYGG 1 cut(s) 4476
BtgZI GCGATG 1 cut(s) 705
BtrI CACGTC 1 cut(s) 547
BtsI GCAGTG 5 cut(s) 118, 1386, 2358, 3075, 5048
BveI ACCTGC 1 cut(s) 1096
CaiI CAGNNNCTG 5 cut(s) 2084, 4856, 5129, 5446, 5579
CciI TCATGA 2 cut(s) 2311, 3481
CfoI GCGC 5 cut(s) 322, 333, 371, 789, 1670
CseI GACGC 7 cut(s) 262, 360, 388, 431, 572, 2060, 5523
CsiI ACCWGGT 1 cut(s) 4204
Csp6I GTAC 9 cut(s) 932, 2669, 3128, 3327, 3355, 3999, 4985, 4995, 5075
CspCI CAANNNNNGTGG 2 cut(s) 1323, 1358
CviQI GTAC 9 cut(s) 932, 2669, 3128, 3327, 3355, 3999, 4985, 4995, 5075
DraI TTTAAA 1 cut(s) 237
DrdI GACNNNNNNGTC 1 cut(s) 551
DriI GACNNNNNGTC 1 cut(s) 427
DseDI GACNNNNNNGTC 1 cut(s) 551
EaeI YGGCCR 2 cut(s) 1630, 4820
Eam1105I GACNNNNNGTC 1 cut(s) 427
EciI GGCGGA 3 cut(s) 375, 1109, 2711
Ecl136II GAGCTC 2 cut(s) 310, 3735
Eco105I TACGTA 1 cut(s) 3326
Eco130I CCWWGG 8 cut(s) 282, 1046, 1633, 3366, 3994, 4569, 4817, 5160
Eco147I AGGCCT 3 cut(s) 1638, 3117, 3787
Eco24I GRGCYC 2 cut(s) 312, 3737
Eco32I GATATC 2 cut(s) 2914, 3146
Eco47I GGWCC 9 cut(s) 403, 1258, 2807, 3059, 3311, 4136, 4403, 4473, 5300
Eco53kI GAGCTC 2 cut(s) 310, 3735
Eco72I CACGTG 1 cut(s) 325
Eco81I CCTNAGG 1 cut(s) 3714
Eco88I CYCGRG 1 cut(s) 4686
EcoICRI GAGCTC 2 cut(s) 310, 3735
EcoNI CCTNNNNNAGG 1 cut(s) 942
EcoO109I RGGNCCY 1 cut(s) 1258
EcoRI GAATTC 3 cut(s) 1326, 2441, 5111
EcoRII CCWGG 5 cut(s) 1638, 3117, 3344, 4204, 4843
EcoRV GATATC 2 cut(s) 2914, 3146
EcoT14I CCWWGG 8 cut(s) 282, 1046, 1633, 3366, 3994, 4569, 4817, 5160
EcoT22I ATGCAT 2 cut(s) 2229, 3421
EcoT38I GRGCYC 2 cut(s) 312, 3737
ErhI CCWWGG 8 cut(s) 282, 1046, 1633, 3366, 3994, 4569, 4817, 5160
Esp3I CGTCTC 1 cut(s) 259
FalI AAGNNNNNCTT 4 cut(s) 1683, 1715, 2136, 2168
FaqI GGGAC 8 cut(s) 1271, 1866, 1873, 2284, 3415, 4486, 4590, 4787
FauI CCCGC 3 cut(s) 3790, 3822, 4786
FauNDI CATATG 3 cut(s) 2767, 3805, 5479
FbaI TGATCA 2 cut(s) 694, 1531
FblI GTMKAC 5 cut(s) 555, 1149, 3873, 4061, 5473
FriOI GRGCYC 2 cut(s) 312, 3737
GlaI GCGC 5 cut(s) 321, 332, 370, 788, 1669
GsaI CCCAGC 2 cut(s) 3694, 5126
GsuI CTGGAG 3 cut(s) 1359, 2889, 5178
HapII CCGG 9 cut(s) 395, 444, 504, 528, 687, 1202, 2666, 3674, 4760
HgaI GACGC 7 cut(s) 262, 360, 388, 431, 572, 2060, 5523
HhaI GCGC 5 cut(s) 322, 333, 371, 789, 1670
Hin1I GRCGYC 4 cut(s) 252, 380, 423, 564
Hin6I GCGC 5 cut(s) 320, 331, 369, 787, 1668
HinP1I GCGC 5 cut(s) 320, 331, 369, 787, 1668
HincII GTYRAC 6 cut(s) 175, 556, 1150, 1288, 4973, 5474
HindII GTYRAC 6 cut(s) 175, 556, 1150, 1288, 4973, 5474
HindIII AAGCTT 4 cut(s) 750, 990, 1706, 3305
HpaI GTTAAC 1 cut(s) 1288
HpaII CCGG 9 cut(s) 395, 444, 504, 528, 687, 1202, 2666, 3674, 4760
Hpy99I CGWCG 6 cut(s) 139, 155, 361, 382, 812, 1154
Hsp92I GRCGYC 4 cut(s) 252, 380, 423, 564
HspAI GCGC 5 cut(s) 320, 331, 369, 787, 1668
Ksp22I TGATCA 2 cut(s) 694, 1531
KspAI GTTAAC 1 cut(s) 1288
LguI GCTCTTC 6 cut(s) 300, 978, 1644, 2157, 2695, 3742
MabI ACCWGGT 1 cut(s) 4204
MfeI CAATTG 2 cut(s) 3228, 5277
MflI RGATCY 5 cut(s) 2968, 3652, 4360, 4490, 5305
MhlI GDGCHC 4 cut(s) 312, 3034, 3737, 4886
MlsI TGGCCA 2 cut(s) 1632, 4822
MluNI TGGCCA 2 cut(s) 1632, 4822
MmeI TCCRAC 2 cut(s) 4647, 5344
Mox20I TGGCCA 2 cut(s) 1632, 4822
Mph1103I ATGCAT 2 cut(s) 2229, 3421
MroXI GAANNNNTTC 1 cut(s) 1124
MscI TGGCCA 2 cut(s) 1632, 4822
MslI CAYNNNNRTG 9 cut(s) 89, 675, 1947, 2594, 3095, 3881, 4266, 4382, 5041
Msp20I TGGCCA 2 cut(s) 1632, 4822
MspA1I CMGCKG 6 cut(s) 1220, 1406, 3206, 3797, 3826, 4679
MspCI CTTAAG 2 cut(s) 1877, 3442
MspI CCGG 9 cut(s) 395, 444, 504, 528, 687, 1202, 2666, 3674, 4760
MspR9I CCNGG 7 cut(s) 505, 1640, 3119, 3346, 3674, 4206, 4845
MunI CAATTG 2 cut(s) 3228, 5277
Mva1269I GAATGC 6 cut(s) 1124, 2307, 2464, 4248, 5329, 5457
MvaI CCWGG 5 cut(s) 1640, 3119, 3346, 4206, 4845
MvnI CGCG 3 cut(s) 320, 333, 371
NciI CCSGG 2 cut(s) 505, 3674
NdeI CATATG 3 cut(s) 2767, 3805, 5479
NmeAIII GCCGAG 1 cut(s) 592
NmuCI GTSAC 8 cut(s) 372, 542, 658, 797, 1417, 1454, 5005, 5342
NsiI ATGCAT 2 cut(s) 2229, 3421
OliI CACNNNNGTG 1 cut(s) 4382
PaeI GCATGC 2 cut(s) 1946, 2688
PagI TCATGA 2 cut(s) 2311, 3481
PasI CCCWGGG 1 cut(s) 4844
PceI AGGCCT 3 cut(s) 1638, 3117, 3787
PciI ACATGT 6 cut(s) 670, 1211, 2290, 3053, 3130, 3748
PciSI GCTCTTC 6 cut(s) 300, 978, 1644, 2157, 2695, 3742
PcsI WCGNNNNNNNCGW 3 cut(s) 330, 386, 552
PctI GAATGC 6 cut(s) 1124, 2307, 2464, 4248, 5329, 5457
PdmI GAANNNNTTC 1 cut(s) 1124
PflMI CCANNNNNTGG 3 cut(s) 1639, 2201, 5107
PmaCI CACGTG 1 cut(s) 325
PmlI CACGTG 1 cut(s) 325
Ppu21I YACGTR 3 cut(s) 325, 2567, 3326
PpuMI RGGWCCY 1 cut(s) 1258
PscI ACATGT 6 cut(s) 670, 1211, 2290, 3053, 3130, 3748
PsiI TTATAA 1 cut(s) 3935
Psp124BI GAGCTC 2 cut(s) 312, 3737
Psp1406I AACGTT 1 cut(s) 232
Psp5II RGGWCCY 1 cut(s) 1258
Psp6I CCWGG 5 cut(s) 1638, 3117, 3344, 4204, 4843
PspCI CACGTG 1 cut(s) 325
PspFI CCCAGC 2 cut(s) 3690, 5122
PspGI CCWGG 5 cut(s) 1638, 3117, 3344, 4204, 4843
PspPPI RGGWCCY 1 cut(s) 1258
PstNI CAGNNNCTG 5 cut(s) 2084, 4856, 5129, 5446, 5579
PsuI RGATCY 5 cut(s) 2968, 3652, 4360, 4490, 5305
PvuII CAGCTG 2 cut(s) 1220, 4679
RsaI GTAC 9 cut(s) 933, 2670, 3129, 3328, 3356, 4000, 4986, 4996, 5076
RsaNI GTAC 9 cut(s) 932, 2669, 3128, 3327, 3355, 3999, 4985, 4995, 5075
RseI CAYNNNNRTG 9 cut(s) 89, 675, 1947, 2594, 3095, 3881, 4266, 4382, 5041
SacI GAGCTC 2 cut(s) 312, 3737
SalI GTCGAC 3 cut(s) 554, 1148, 5472
SapI GCTCTTC 6 cut(s) 300, 978, 1644, 2157, 2695, 3742
ScaI AGTACT 1 cut(s) 3356
ScrFI CCNGG 7 cut(s) 505, 1640, 3119, 3346, 3674, 4206, 4845
SduI GDGCHC 4 cut(s) 312, 3034, 3737, 4886
SexAI ACCWGGT 1 cut(s) 4204
SfcI CTRYAG 7 cut(s) 769, 1977, 2850, 3423, 4029, 4152, 4329
SinI GGWCC 9 cut(s) 403, 1258, 2807, 3059, 3311, 4136, 4403, 4473, 5300
SmiMI CAYNNNNRTG 9 cut(s) 89, 675, 1947, 2594, 3095, 3881, 4266, 4382, 5041
SmlI CTYRAG 7 cut(s) 263, 413, 516, 587, 1877, 3350, 3442
SmoI CTYRAG 7 cut(s) 263, 413, 516, 587, 1877, 3350, 3442
SnaBI TACGTA 1 cut(s) 3326
SpeI ACTAGT 1 cut(s) 5009
SphI GCATGC 2 cut(s) 1946, 2688
SseBI AGGCCT 3 cut(s) 1638, 3117, 3787
SspI AATATT 2 cut(s) 1912, 4837
SstI GAGCTC 2 cut(s) 312, 3737
StuI AGGCCT 3 cut(s) 1638, 3117, 3787
StyD4I CCNGG 7 cut(s) 503, 1638, 3117, 3344, 3672, 4204, 4843
StyI CCWWGG 8 cut(s) 282, 1046, 1633, 3366, 3994, 4569, 4817, 5160
TatI WGTACW 2 cut(s) 3127, 3354
TauI GCSGC 7 cut(s) 331, 497, 500, 3209, 3506, 3814, 3829
TseFI GTSAC 8 cut(s) 372, 542, 658, 797, 1417, 1454, 5005, 5342
Tsp45I GTSAC 8 cut(s) 372, 542, 658, 797, 1417, 1454, 5005, 5342
TspGWI ACGGA 2 cut(s) 152, 4027
Van91I CCANNNNNTGG 3 cut(s) 1639, 2201, 5107
Vha464I CTTAAG 2 cut(s) 1877, 3442
VpaK11BI GGWCC 9 cut(s) 403, 1258, 2807, 3059, 3311, 4136, 4403, 4473, 5300
XagI CCTNNNNNAGG 1 cut(s) 942
XapI RAATTY 8 cut(s) 1326, 2441, 3291, 3721, 4004, 4456, 5111, 5172
XmiI GTMKAC 5 cut(s) 555, 1149, 3873, 4061, 5473
XmnI GAANNNNTTC 1 cut(s) 1124
ZraI GACGTC 1 cut(s) 253
ZrmI AGTACT 1 cut(s) 3356
Zsp2I ATGCAT 2 cut(s) 2229, 3421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.