Rorug01G0271300

Clustered mitochondria protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0007431
Physical Location & Seq
Reverse (-)
38380402 .. 38381065
664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0271300.1

Sequence Viewer

Length: 558 bp
ATGGCCTGTTTAAACTACAATTTTGCAAAGGAGAGATCAGAATCAAAATTTGAAGTATCATTACTTATAGTGATTGGGGGCATTGGTAATGATGATACACTTCAGTCTTTGTTGGTTTCATTGCTGACCATAGTTCTTGCTTCATATCTGGTTCTCTGTGTTCTCATTTCTCCCTGTTATATGGGCACCATAGTTCTTGCTTTATATGCTAGGAGTTGTTATCTAGCTGAAGATCTGTGTAGGCACACTGGTACTCGTCTATTCGAAGTGGTAAGATTCCTTCCAGAGTATGGGGGTGCAATACCAAAGAGATCAGAAGGGGGCACATTTCAGGTTGAATCAAAAGTAGTCTGTCGAGTTCCTAGTCAATCAAGACATCGGTTACATACAGATGATGAATCTGATATCCCATCTTCACCAATGCAATATCATGACCAGTCTGATAATGTTGGTTCTACGCCAAGAAATTCACCAGTTGGTCATGACCATACACTTCTGCATAGAGAAATACATGAACATGGTAAGCCAAGCATGCACACCAAAGAGTTGTTCGTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU_N TPR_12 eIF3_p135

Protein Analysis

185

Amino Acids

20.66

Weight (kDa)

6.18

Isoelectric Point (pI)

57.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 185
AccB7I CCANNNNNTGG 1 cut(s) 290
AcsI RAATTY 2 cut(s) 47, 466
AcuI CTGAAG 2 cut(s) 86, 249
AfaI GTAC 1 cut(s) 253
AfiI CCNNNNNNNGG 1 cut(s) 290
AgsI TTSAA 2 cut(s) 53, 338
AjuI GAANNNNNNNTTGG 1 cut(s) 533
AluBI AGCT 1 cut(s) 227
AluI AGCT 1 cut(s) 227
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 2 cut(s) 47, 466
AsuHPI GGTGA 2 cut(s) 408, 462
AsuII TTCGAA 1 cut(s) 264
BaeGI GKGCMC 2 cut(s) 188, 326
BanI GGYRCC 1 cut(s) 185
BarI GAAGNNNNNNTAC 4 cut(s) 45, 77, 264, 296
BccI CCATC 1 cut(s) 418
BfaI CTAG 4 cut(s) 210, 224, 363, 556
BglII AGATCT 1 cut(s) 232
BmiI GGNNCC 1 cut(s) 187
Bpu14I TTCGAA 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 40
Bsc4I CCNNNNNNNGG 1 cut(s) 290
Bse1I ACTGG 3 cut(s) 253, 436, 473
Bse3DI GCAATG 1 cut(s) 119
Bse8I GATNNNNATC 1 cut(s) 40
BseJI GATNNNNATC 1 cut(s) 40
BseLI CCNNNNNNNGG 1 cut(s) 290
BseMI GCAATG 1 cut(s) 119
BseNI ACTGG 3 cut(s) 253, 436, 473
BseSI GKGCMC 2 cut(s) 188, 326
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 290
BsnI GGCC 1 cut(s) 5
Bsp119I TTCGAA 1 cut(s) 264
Bsp1286I GDGCHC 2 cut(s) 188, 326
Bsp143I GATC 3 cut(s) 35, 232, 311
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 2 cut(s) 430, 481
BspLI GGNNCC 1 cut(s) 187
BspT104I TTCGAA 1 cut(s) 264
BspT107I GGYRCC 1 cut(s) 185
BsrDI GCAATG 1 cut(s) 119
BsrI ACTGG 3 cut(s) 253, 436, 473
BssMI GATC 3 cut(s) 35, 232, 311
BstBI TTCGAA 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 533
BstKTI GATC 3 cut(s) 38, 235, 314
BstMBI GATC 3 cut(s) 35, 232, 311
BstMWI GCNNNNNNNGC 2 cut(s) 206, 532
BstNSI RCATGY 1 cut(s) 535
BstSLI GKGCMC 2 cut(s) 188, 326
BstX2I RGATCY 1 cut(s) 232
BstYI RGATCY 1 cut(s) 232
BsuRI GGCC 1 cut(s) 5
BtsIMutI CAGTG 1 cut(s) 246
Cac8I GCNNGC 1 cut(s) 533
CciI TCATGA 2 cut(s) 430, 481
Csp6I GTAC 1 cut(s) 252
CviAII CATG 5 cut(s) 431, 482, 512, 518, 532
CviJI RGCY 3 cut(s) 5, 227, 526
CviKI_1 RGCY 3 cut(s) 5, 227, 526
CviQI GTAC 1 cut(s) 252
DpnI GATC 3 cut(s) 37, 234, 313
DpnII GATC 3 cut(s) 35, 232, 311
DraI TTTAAA 1 cut(s) 12
Eco32I GATATC 1 cut(s) 406
Eco57I CTGAAG 2 cut(s) 86, 249
EcoRV GATATC 1 cut(s) 406
FaeI CATG 5 cut(s) 434, 485, 515, 521, 535
FatI CATG 5 cut(s) 430, 481, 511, 517, 531
FspBI CTAG 4 cut(s) 210, 224, 363, 556
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 5 cut(s) 434, 485, 515, 521, 535
HinfI GANTC 4 cut(s) 41, 276, 338, 398
HphI GGTGA 2 cut(s) 408, 462
Hpy188I TCNGA 4 cut(s) 40, 316, 403, 442
Hpy188III TCNNGA 4 cut(s) 284, 372, 431, 482
HpyAV CCTTC 2 cut(s) 290, 311
HpyCH4V TGCA 5 cut(s) 26, 299, 424, 499, 535
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 532
Hsp92II CATG 5 cut(s) 434, 485, 515, 521, 535
Kzo9I GATC 3 cut(s) 35, 232, 311
LpnPI CCDG 8 cut(s) 19, 134, 187, 234, 297, 317, 449, 486
MaeI CTAG 4 cut(s) 210, 224, 363, 556
MaeIII GTNAC 1 cut(s) 381
MalI GATC 3 cut(s) 37, 234, 313
MboI GATC 3 cut(s) 35, 232, 311
MboII GAAGA 2 cut(s) 242, 405
MflI RGATCY 1 cut(s) 232
MhlI GDGCHC 2 cut(s) 188, 326
MluCI AATT 3 cut(s) 19, 47, 466
MseI TTAA 1 cut(s) 11
MslI CAYNNNNRTG 2 cut(s) 390, 516
MssI GTTTAAAC 1 cut(s) 12
MwoI GCNNNNNNNGC 2 cut(s) 206, 532
NdeII GATC 3 cut(s) 35, 232, 311
NlaIII CATG 5 cut(s) 434, 485, 515, 521, 535
NlaIV GGNNCC 1 cut(s) 187
NspI RCATGY 1 cut(s) 535
NspV TTCGAA 1 cut(s) 264
PaeI GCATGC 1 cut(s) 535
PagI TCATGA 2 cut(s) 430, 481
PfeI GAWTC 4 cut(s) 41, 276, 338, 398
PflMI CCANNNNNTGG 1 cut(s) 290
PmeI GTTTAAAC 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 187
PsuI RGATCY 1 cut(s) 232
RsaI GTAC 1 cut(s) 253
RsaNI GTAC 1 cut(s) 252
RseI CAYNNNNRTG 2 cut(s) 390, 516
SaqAI TTAA 1 cut(s) 11
Sau3AI GATC 3 cut(s) 35, 232, 311
SduI GDGCHC 2 cut(s) 188, 326
SetI ASST 2 cut(s) 229, 336
SfuI TTCGAA 1 cut(s) 264
SmiMI CAYNNNNRTG 2 cut(s) 390, 516
SphI GCATGC 1 cut(s) 535
Sse9I AATT 3 cut(s) 19, 47, 466
SspMI CTAG 4 cut(s) 210, 224, 363, 556
TaqI TCGA 2 cut(s) 264, 355
TasI AATT 3 cut(s) 19, 47, 466
TfiI GAWTC 4 cut(s) 41, 276, 338, 398
Tru1I TTAA 1 cut(s) 11
Tru9I TTAA 1 cut(s) 11
TscAI CASTG 1 cut(s) 253
TspDTI ATGAA 4 cut(s) 108, 132, 411, 528
TspRI CASTG 1 cut(s) 253
Van91I CCANNNNNTGG 1 cut(s) 290
XapI RAATTY 2 cut(s) 47, 466
XceI RCATGY 1 cut(s) 535
XspI CTAG 4 cut(s) 210, 224, 363, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.