Clustered mitochondria protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G01320 AT1G01320 AT1G01320 |
| fragaria_vesca | FvH4_7g16420 FvH4_7g16420 |
| malus_domestica | MD01G1080500.v1.1 MD07G1149400.v1.1 |
| prunus_persica | Prupe.2G188000_v2.0.a1 Prupe.2G188000_v2.0.a1 |
| pyrus_communis | pycom01g10860 pycom03g14110 pycom07g14800 pycom14g11950 |
| rosa_chinensis | RchiOBHm_Chr1g0359431 RchiOBHm_Chr1g0359451 |
| rosa_laevigata | RLG00000027870 |
| rosa_multiflora | Rmu_ssc0000358.1_g000009 |
| rosa_roxburghii | Rroxscaffold_4G00297010 |
| rosa_rugosa | Rorug01G0271200 Rorug01G0271300 |
| rosa_samantha | Rh1AG284600 Rh1BG250600 Rh1CG268700 Rh1DG279700 |
| rosa_wichuraiana | Rw1G025280 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 39 |
| AluBI | AGCT | 4 cut(s) | 61, 160, 175, 212 |
| AluI | AGCT | 4 cut(s) | 61, 160, 175, 212 |
| BauI | CACGAG | 1 cut(s) | 115 |
| BccI | CCATC | 1 cut(s) | 192 |
| BfaI | CTAG | 2 cut(s) | 176, 217 |
| BlpI | GCTNAGC | 1 cut(s) | 156 |
| BmsI | GCATC | 1 cut(s) | 83 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 156 |
| BpuEI | CTTGAG | 1 cut(s) | 182 |
| Bse118I | RCCGGY | 1 cut(s) | 70 |
| BseRI | GAGGAG | 1 cut(s) | 185 |
| BsiSI | CCGG | 1 cut(s) | 71 |
| BslFI | GGGAC | 1 cut(s) | 34 |
| BsmFI | GGGAC | 1 cut(s) | 34 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 156 |
| BsrFI | RCCGGY | 1 cut(s) | 70 |
| BssAI | RCCGGY | 1 cut(s) | 70 |
| BssSI | CACGAG | 1 cut(s) | 115 |
| Bst2BI | CACGAG | 1 cut(s) | 115 |
| BstC8I | GCNNGC | 1 cut(s) | 214 |
| BstDEI | CTNAG | 1 cut(s) | 156 |
| Cac8I | GCNNGC | 1 cut(s) | 214 |
| Cfr10I | RCCGGY | 1 cut(s) | 70 |
| CviJI | RGCY | 5 cut(s) | 61, 113, 160, 175, 212 |
| CviKI_1 | RGCY | 5 cut(s) | 61, 113, 160, 175, 212 |
| DdeI | CTNAG | 1 cut(s) | 156 |
| Eco57I | CTGAAG | 1 cut(s) | 39 |
| FaiI | YATR | 2 cut(s) | 81, 83 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 135, 167 |
| FaqI | GGGAC | 1 cut(s) | 34 |
| FauNDI | CATATG | 1 cut(s) | 81 |
| FspBI | CTAG | 2 cut(s) | 176, 217 |
| HapII | CCGG | 1 cut(s) | 71 |
| HindIII | AAGCTT | 1 cut(s) | 158 |
| HinfI | GANTC | 1 cut(s) | 179 |
| HpaII | CCGG | 1 cut(s) | 71 |
| Hpy188I | TCNGA | 2 cut(s) | 58, 184 |
| Hpy188III | TCNNGA | 1 cut(s) | 92 |
| HpyAV | CCTTC | 1 cut(s) | 63 |
| HpyCH4V | TGCA | 1 cut(s) | 85 |
| HpyF3I | CTNAG | 1 cut(s) | 156 |
| LmnI | GCTCC | 2 cut(s) | 172, 209 |
| LpnPI | CCDG | 3 cut(s) | 3, 77, 84 |
| LweI | GCATC | 1 cut(s) | 83 |
| MaeI | CTAG | 2 cut(s) | 176, 217 |
| MboII | GAAGA | 1 cut(s) | 155 |
| MluCI | AATT | 1 cut(s) | 187 |
| MnlI | CCTC | 3 cut(s) | 124, 124, 163 |
| MseI | TTAA | 2 cut(s) | 8, 26 |
| MspI | CCGG | 1 cut(s) | 71 |
| NdeI | CATATG | 1 cut(s) | 81 |
| PfeI | GAWTC | 1 cut(s) | 179 |
| SaqAI | TTAA | 2 cut(s) | 8, 26 |
| SetI | ASST | 5 cut(s) | 55, 63, 162, 177, 214 |
| SfaNI | GCATC | 1 cut(s) | 83 |
| SgeI | CNNG | 9 cut(s) | 30, 55, 83, 104, 127, 129, 164, 173, 188 |
| SmlI | CTYRAG | 1 cut(s) | 161 |
| SmoI | CTYRAG | 1 cut(s) | 161 |
| Sse9I | AATT | 1 cut(s) | 187 |
| SspMI | CTAG | 2 cut(s) | 176, 217 |
| TasI | AATT | 1 cut(s) | 187 |
| TfiI | GAWTC | 1 cut(s) | 179 |
| Tru1I | TTAA | 2 cut(s) | 8, 26 |
| Tru9I | TTAA | 2 cut(s) | 8, 26 |
| XspI | CTAG | 2 cut(s) | 176, 217 |