RchiOBHm_Chr1g0359431

Clustered mitochondria protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0007431
Physical Location & Seq
Forward (+)
51391355 .. 51403440
12086 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58449

Sequence Viewer

Length: 5580 bp
ATGGCACCCAGAAACAGTCGTGGAAAGGGCAAAGGTGGAGAGAAGAAGAAGAAGGAAGAGAAGGTTCTTCCTGTTGTGATGGACATCACTGTGAACCTTCCAGATGAGAGCAGTGTTGTTTTGAAGGGAATATCGACGGACAGGATCATCGACGTTCGCCAACTATTATCAGTCAACACAGAAACTTGTAACATCACCAATTTTTCACTATCCCATGAGGTAAGAGGGAAACGTTTAAAAGATACGGTGGACGTCTCCGCACTCAAGCCATGCGTCATCACCTTGGTCGAAGAGGACTATGATGAAGAGCGCGCCACCGCGCACGTGCGGCGCGTGCTGGACATCGTGGCCTGCACGACGAGCTTTGGCGCGTCACCGACGCCTCCGCCGACTCCGGCGAAGGACCAAAGCCTCAAGCCCGACGCCTCGTCCGCAGTCCTCTCCGGTAAAAATGCGCAGGATAATAAGACCGCCAAGAAATCCACCGCCGCGGCGGCCAAGCCTCAAGGCTCCGCCGGAGCCGATAAGCGTGACGTGGCGGTCGACTCGGACGCCGAGCTGAGCCACTCTTGCCTCAAGCTCGGTTCTTTCTACGACTTCTTCTCTCTCGCTCATCTCACTCCCCCGCTGCAATTTATCCGAAGGGTGACGAAACGACATGTCGATGAGATTTCCGGCGATGATCACCTGTTTTCTCTTGAAGTGAAGCTTTGCAATGGGAAGGTGGTTCTGGTTGAAGCTTGCAGAAAGGGATTCTATAGTGTAGGGAAGCAGCGCATTCTGTGTCACAACCTCGTCGATTTGCTACGCCAGCTTAGTAGAGCTTTTGACAATGCTTACGATGATCTGCTGAAAGCATTTTCGGAACGTAATAAGTTTGGGAATCTTCCCTATGGCTTTCGAGCAAACACATGGCTTGTACCGCCTATTGCAGGGCAGTCGCCTTCAGGTTTCCCTGCTCTTCCTGTGGAGGATGAAGCTTGGGGAGGAAATGGAGGGGGTCTAGGAAGGGATGGGCAATTTGATCTGATTCCTTGGGCTAATGAGTTTTGGTGTATTGCATCTATGCCTTGCAAGACGGCGGAGGAGAGGCAGGTTCGAGATAGGAAGGCATTCCTTCTTCACAGCCTATTTGTCGACGTTTCCATTTTTAGAGCCATTAAGGCTGTGCAGCATGTGATGGCAAAGCCAGAATTAACATGTTCAGCTGCAAACAGTGAGGTTCTTTATACTGAGAGAGTAGGGGACTTGAATGTGATCGTAACAAAGGATGTTAACAATGCGAGCTGTAAGGTGGATACTAAAATTGATGGAATTCAGGCAACTGGAGTGGATAAAAAGAATCTAGCACAACGAAACCTTCTTAAAGGGATCACTGCTGACGAGAACACCGCTGCACATGATGTCACCACTCTAGGTGTTGTCAATGTCCGATATTGTGGTCACATTGCAGTTGTGAAAGTTGAGGGCAAAGAAACTAAGAAAGTCAGTTCTCCATCCCAAAGCATTGACCTCCTTGATCAACCTGAAGGTGGTGCCAATGCCCTTAATATCAACAGTTTGAGATTACTACTTCACACTACTACACCTTCAGAGCAGAATAAACTGGCATCACATGGGCATGGTCTGGAACATGAAGAGCTTTCTGCTTCCTGCACTTTTGTTGAGAAGCTATTAGAAGAAAGTCTTGCTAAGCTTGACAAAGAGGAGCTAGATTCTGATAGTTTTGTGAGATGGGAACTAGGAGCTTGCTGGATACAACACTTGCAAGACCAAAAAAATACAGACAAGGATAAGAAACCATTGGGTGAGAAGGCTAAGAATGAGATGAAGGTCGAGGGACTTGGGACACCTCTTAAATCCCTTAAGAACACGAAGAAGAAATCAGATGGAGCCAATATTAAAGTGCAGTCTGATAGCTCAAAGTCGCATGCAGATGGTGTTGTGGGAGAAGTAGAAAATGCTATAGGTTCTGTGGAATCAAAGTTTGAAACCAGTGCTAAAGAAAATGAGCTTGTGCTGACTGAGATGCTCTCTGACGCAGCCTTCGCTCGACTAAAAGAATCAGAAACTGGACTTCATTGCAAGTCTCTGCAAGAACTGATTGACTTATCTCAGAAGTATTACTCTGAAGTTGCTCTTCCAAAACTGGTAGCCGATTTTGGTTCATTGGAACTTTCACCAGTTGATGGTCGAACTTTAACTGATTTCATGCATACTAGAGGTCTTCGGATGCGTTCTCTGGGGCAAGTTGTCAAGCTATCAGAGAAGCTATCACATGTGCAGTCCCTTTGCATTCATGAGATGATAGTGCGAGCTTTTAAGCACATACTTCAGGCAGTGATTGCTGCTGTTAATAACACTGAGAAAATGGCTGCCTCGATTGCTGCTGCATTGAATCTTATGTTGGGGGCTCCAGAAAATGAAGAATTCAATAAGTCTTTCAATGTGCATTCCCTTGTGTGGAGATGGCTGGAAGTATTCTTGCGAAAGAGATATGGATGGGATGTTAGCAGCTTCAACTACAATGATGTGAGGAGATTTGCGATTCTACGTGGCCTGTGTCATAAGGTGGGCATTGAGATGGTTCCACGAGATTTTGATATGGAGTCTCCAAATCCATTTCAGAGTTCTGATATTGTCAGCTTAGTTCCAGTACATAAGCAAGCTGCATGCTCTTCGGCAGATGGTAGGCAACTATTGGAGTCATCAAAAACAGCCTTAGATAAGGGAAAACTTGAAGATGCAGTTGCATATGGCACTAAGGCTCTTGCAAAGCTGGTAGCAGTTTGTGGTCCATACCATCGAATGACAGCAGGAGCTTACAGCCTCCTTGCTGTAGTTTTATATCACACTGGAGATTTTAATCAGGCTACAATTTATCAGCAAAAGGCTCTGGATATCAATGAGAGAGAATTAGGGCTTGACCATCCAGACACCATGAAGAGTTATGGGGATCTTGCTGTGTTCTATTACAGACTTCAACATACAGAGCTGGCTCTCAAATATGTAAAACGTGCTCTGTATCTCTTGCATCTCACATGTGGACCATCTCATCCAAACACTGCTGCAACATACATCAACGTGGCTATGATGGAAGAAGGCCTGGGAAATGTACATGTTGCCCTCAGATATCTACACAAGGCTTTGAAGTGTAATCAGAAGTTACTTGGCCCAGATCATATTCAGACAGCGGCTAGTTACCATGCTATTGCAATTGCACTCTCATTGATGGAAGCATACCCTTTAAGTGTTCAGCATGAGCAGACAACATTGCAAATTCTGCGTGCAAAGCTTGGACCAGATGATCTACGTACACAAGATGCTGCTGCCTGGCTTGAGTACTTTGAGTCCAAGGCTTTTGAACAGCAAGAAGCTGCAAGAAATGGGACTCGAAAACCAGATGCATCTATAGCCAGCAAAGGCCACTTAAGCGTATCAGATTTGCTTGACTACATCAATCCCACTCATGATGCTAAAGGGAGAGATGTGGCAATGAAGAGGAAAACCTACATAACAAAGTTGAAGGAAAAATCCTATCAAACTATCAGCTCAGCAAGTTCTGACGAATCTTCAAAAGAAACCACAAAAGAGGTTTCAGACGAAGAAACACATACACTTGAACCAAGAGAAATAACAGATCCCATCCAAGAAAACATCCCGGCTTCAGTTGAACCCCAGCATGTTGTAGAAGAGATTCCTGAGGAAAATTCAAACATGAGCTCTTCTGAAACACATGTTGAAGGGGAAGATGACTGGCAACCAGTTCAAAGGCCTAGATCAGTGGGTTCATATGGGCGGCGTGTAAAGCAGCGGCGGGCAGCTATTGGGAAGGTTTATAGTTACCAGAAGAAATATGTAGACGCTGATATGGATTACCCTTCAGTGAAGAATACTAACCAAAACAGTAGGTATTACCTTCTAAAGAAAAGGCCAACATCTCATGGAAGTTATACAGAAAATCAGATTGCGAATCCCTCCCAAGGTACTAAATTTGGACGGAGAATGGTAAAAGCTGTAGCATACAGAGTCAAGTCTATGCCTTTGTCTACCAAAGTTGTTGCAGCAGAAAGTTTGAGTTCCTCATCAGAAGTCAGTCCAAATGTTTCACCACATGGGATTGGTCCAGTTAAAGGTTCTATAGTCAGTCTTGGAAAATCTCCTTCATACAAGGAAGTAGCATTGGCTCCACCAGGTAGTATTGCTAAAATGCAAACTGTTTTCCCTCAGAATGGCATTCCAGATAACCATGAGCATGGTATCCAAAGACAAGAAGAGGAAATAATTGAAATCAAAGGAAATTCCAAACCAAAGGCTGTAGTTGAAACTATACTTGAAGAAAAGAAGGATCCTGTATTGGTTTCCACAGATGTTTTACGAGAGCAAACTGGACTTGTTGAGAAGAAAGAAGATACTAATTCACCTGAAGTGAAGGAAGATAAAAATGCACTGATATTCGGGACCGTGGATGAACTTGGATCCAGTGCTGTTAAGTTTCAAGAGGCAGCAGTTGATAACGTATTAGTAGATGGACTGCCAAAATCCATTGATTCTATTTCTGCCAAGGAGGGACTCTGTGAGAACAATCCATCTGGCACTTCTGAATCGCATGATTCCAACTCCACTTTGCAAGGAGTAGATGATTTGGAGGCATCCTCGCTTGTTACTTCAGCTGATACTCGGGGATTGCCAAATAAGAAGTTATCTGCATCGGCAGCTCCATTCAATCCCTCACCATCCACTCGTGCTGCTTCGGTTCCCATGAACATTGCTATACCTTCTGGTGCGGGTTCTGTCCCAACTATTGCACCTTGGCCAGTAAACCTGAATATTCACCCAGGGGCAGCTACTGTCTTACCCACAGTTAATCCCATGTGCTCCTCTCCTCATCATCCCTACCCTTCTCCCCCTGCTACCCCGAATATCATACAGCCTTTGCCATTTATGTTCCCTCCTTACAGTCAACCCCAAGTTGTACGAACCAGTACCTTTCCTGTGACTAGTGCGTTTCATCCAAATCATTACACATGGCAGTGCAATGTGAATCCTAATGTATCTGAGTTTGTACCTACAACAGTTTGGCATGGTTGCCATCCAATGGAATTCTCTGCCCCAGCACCTGTTGTTGAGCCAATTTCTGATCCCTCTCCCTTGGAGTCAAAAATTCAGAACGATGATTCTGCTCCAGTTCTGCCAGTGGACATTGATAATGTGGGGGAAACTAAGAAAGAAGCGGACATTCTAACATCAGAGGCAACTTGTAATCCATTTGAAAGTGTCAAGGAAGTTGGTCCTGATCTTTGTGGGGTTGAGAATGCTCAGAACGAACCATGTGACAGCCCAAATGGAAAAGTTGGAAGTATCGCTGAAAGGACGACTGATGGAGAGAAAACCTTCAGCATTTTGATAAGGGGCAGAAGAAACCGAAAGCAGACTCTGAGAATGCCAGTAAGTTTGCTCAGTCGACCATATGGCTCACAGTCATTCAAAGTCATATATAACAGGGTGGTCAGGGGGAATGATGCGTCCAAACCCATCAGCTTTTCATCTAGTGAAAACTGCACAGCTACTGCTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CLU_N TPR_12 eIF3_p135

Protein Analysis

1859

Amino Acids

203.58

Weight (kDa)

6.34

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CLU_N PF15044 46 - 116 9.2e-11 Mitochondrial function, CLU-N-term
eIF3_p135 PF12807 726 - 868 2.5e-24 Translation initiation factor eIF3 subunit 135
TPR_12 PF13424 908 - 970 2.3e-07 Tetratricopeptide repeat
TPR_NPHP3 PF24885 910 - 1008 1.8e-07 Nephrocystin-3 TPR domain
TPR_10 PF13374 938 - 979 2.1e-09 Tetratricopeptide repeat
TPR_12 PF13424 938 - 1008 1.5e-12 Tetratricopeptide repeat
TPR_10 PF13374 1022 - 1062 3.4e-07 Tetratricopeptide repeat
TPR_12 PF13424 1022 - 1096 5.3e-12 Tetratricopeptide repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 539
AatII GACGTC 1 cut(s) 255
Acc16I TGCGCA 1 cut(s) 456
Acc36I ACCTGC 1 cut(s) 1084
AccB1I GGYRCC 2 cut(s) 4, 1535
AccB7I CCANNNNNTGG 2 cut(s) 2189, 5098
AccI GTMKAC 5 cut(s) 543, 1137, 3861, 4049, 5464
AccII CGCG 5 cut(s) 312, 320, 333, 371, 491
AclI AACGTT 1 cut(s) 232
AclWI GGATC 9 cut(s) 152, 1379, 2964, 3635, 4343, 4356, 4473, 4486, 5135
AcoI YGGCCR 2 cut(s) 495, 4814
AcsI RAATTY 8 cut(s) 1314, 2429, 3279, 3709, 3992, 4300, 5102, 5163
AcvI CACGTG 1 cut(s) 325
AcyI GRCGYC 4 cut(s) 252, 380, 423, 552
AfaI GTAC 9 cut(s) 921, 2658, 3117, 3316, 3344, 3988, 4977, 4987, 5067
AfiI CCNNNNNNNGG 8 cut(s) 932, 1532, 2189, 2463, 3983, 4133, 4232, 5098
AflII CTTAAG 2 cut(s) 1865, 3430
AflIII ACRYGT 6 cut(s) 658, 1199, 2278, 3041, 3118, 3736
AhdI GACNNNNNGTC 1 cut(s) 427
AhlI ACTAGT 1 cut(s) 5000
AjiI CACGTC 1 cut(s) 535
AjnI CCWGG 4 cut(s) 3105, 3332, 4192, 4837
AjuI GAANNNNNNNTTGG 2 cut(s) 2390, 2422
Alw21I GWGCWC 3 cut(s) 3022, 3725, 4880
Alw26I GTCTC 3 cut(s) 259, 2094, 2616
AlwI GGATC 9 cut(s) 152, 1379, 2964, 3635, 4343, 4356, 4473, 4486, 5135
AlwNI CAGNNNCTG 5 cut(s) 2072, 4850, 5120, 5437, 5570
Ama87I CYCGRG 1 cut(s) 4680
AoxI GGCC 9 cut(s) 348, 495, 2557, 3103, 3172, 3424, 3773, 3932, 4814
ApoI RAATTY 8 cut(s) 1314, 2429, 3279, 3709, 3992, 4300, 5102, 5163
ArsI GACNNNNNNTTYG 2 cut(s) 2030, 2062
Asp700I GAANNNNTTC 3 cut(s) 1112, 3696, 5393
AspLEI GCGC 7 cut(s) 312, 314, 322, 333, 371, 457, 777
AspS9I GGNCC 8 cut(s) 403, 2795, 3047, 3173, 3299, 4124, 4461, 5291
AsuC2I CCSGG 1 cut(s) 3662
AvaI CYCGRG 1 cut(s) 4680
AvaII GGWCC 7 cut(s) 403, 2795, 3047, 3299, 4124, 4461, 5291
AxyI CCTNAGG 1 cut(s) 3702
BalI TGGCCA 1 cut(s) 4816
BamHI GGATCC 2 cut(s) 4348, 4478
BanI GGYRCC 2 cut(s) 4, 1535
BanII GRGCYC 2 cut(s) 2416, 3725
BauI CACGAG 2 cut(s) 2592, 4743
BbrPI CACGTG 1 cut(s) 325
BbsI GAAGAC 1 cut(s) 2219
Bbv12I GWGCWC 3 cut(s) 3022, 3725, 4880
BceAI ACGGC 1 cut(s) 1095
BcgI CGANNNNNNTGC 6 cut(s) 921, 955, 2661, 2695, 5162, 5196
BciT130I CCWGG 4 cut(s) 3107, 3334, 4194, 4839
BciVI GTATCC 3 cut(s) 1291, 1749, 4271
BclI TGATCA 2 cut(s) 682, 1519
BcnI CCSGG 1 cut(s) 3662
BcoDI GTCTC 3 cut(s) 259, 2094, 2616
BcuI ACTAGT 1 cut(s) 5000
BfmI CTRYAG 7 cut(s) 757, 1965, 2838, 3411, 4017, 4140, 4317
BfrI CTTAAG 2 cut(s) 1865, 3430
BfuAI ACCTGC 1 cut(s) 1084
BfuI GTATCC 3 cut(s) 1291, 1749, 4271
BglI GCCNNNNNGGC 2 cut(s) 494, 1163
BlpI GCTNAGC 3 cut(s) 560, 1692, 3553
BmcAI AGTACT 1 cut(s) 3344
Bme1390I CCNGG 5 cut(s) 3107, 3334, 3662, 4194, 4839
Bme18I GGWCC 7 cut(s) 403, 2795, 3047, 3299, 4124, 4461, 5291
BmeRI GACNNNNNGTC 1 cut(s) 427
BmeT110I CYCGRG 1 cut(s) 4680
BmgBI CACGTC 1 cut(s) 535
BmgT120I GGNCC 8 cut(s) 403, 2795, 3047, 3173, 3299, 4124, 4461, 5291
BmrFI CCNGG 5 cut(s) 3107, 3334, 3662, 4194, 4839
BpiI GAAGAC 1 cut(s) 2219
BplI GAGNNNNNCTC 4 cut(s) 2018, 2050, 4640, 4672
BpmI CTGGAG 4 cut(s) 1347, 2400, 2877, 5169
Bpu1102I GCTNAGC 3 cut(s) 560, 1692, 3553
BpuEI CTTGAG 5 cut(s) 248, 398, 489, 560, 3359
BpuMI CCSGG 1 cut(s) 3662
BsaAI YACGTR 3 cut(s) 325, 2555, 3314
BsaBI GATNNNNATC 2 cut(s) 83, 2865
BsaHI GRCGYC 4 cut(s) 252, 380, 423, 552
BsaWI WCCGGW 1 cut(s) 443
Bsc4I CCNNNNNNNGG 8 cut(s) 932, 1532, 2189, 2463, 3983, 4133, 4232, 5098
Bse21I CCTNAGG 1 cut(s) 3702
Bse3DI GCAATG 7 cut(s) 721, 1446, 2080, 3272, 3501, 4767, 5044
Bse8I GATNNNNATC 2 cut(s) 83, 2865
BseBI CCWGG 4 cut(s) 3107, 3334, 4194, 4839
BseJI GATNNNNATC 2 cut(s) 83, 2865
BseLI CCNNNNNNNGG 8 cut(s) 932, 1532, 2189, 2463, 3983, 4133, 4232, 5098
BseMI GCAATG 7 cut(s) 721, 1446, 2080, 3272, 3501, 4767, 5044
BsePI GCGCGC 1 cut(s) 310
BseRI GAGGAG 5 cut(s) 1100, 1721, 2551, 4870, 4875
BseYI CCCAGC 2 cut(s) 3678, 5113
BsgI GTGCAG 7 cut(s) 337, 1190, 1380, 1639, 1928, 2303, 5545
Bsh1236I CGCG 5 cut(s) 312, 320, 333, 371, 491
Bsh1285I CGRYCG 1 cut(s) 543
BshFI GGCC 9 cut(s) 350, 497, 2559, 3105, 3174, 3426, 3775, 3934, 4816
BshNI GGYRCC 2 cut(s) 4, 1535
BsiEI CGRYCG 1 cut(s) 543
BsiHKAI GWGCWC 3 cut(s) 3022, 3725, 4880
BsiHKCI CYCGRG 1 cut(s) 4680
BsiSI CCGG 5 cut(s) 395, 444, 516, 675, 3662
BslFI GGGAC 8 cut(s) 1259, 1854, 1861, 2272, 3403, 4474, 4584, 4781
BslI CCNNNNNNNGG 8 cut(s) 932, 1532, 2189, 2463, 3983, 4133, 4232, 5098
BsmAI GTCTC 3 cut(s) 259, 2094, 2616
BsmBI CGTCTC 1 cut(s) 259
BsmFI GGGAC 8 cut(s) 1259, 1854, 1861, 2272, 3403, 4474, 4584, 4781
BsmI GAATGC 7 cut(s) 777, 1112, 2295, 2452, 4236, 5320, 5448
BsnI GGCC 9 cut(s) 350, 497, 2559, 3105, 3174, 3426, 3775, 3934, 4816
BsoBI CYCGRG 1 cut(s) 4680
Bsp1286I GDGCHC 4 cut(s) 2416, 3022, 3725, 4880
Bsp1407I TGTACA 1 cut(s) 3115
Bsp1720I GCTNAGC 3 cut(s) 560, 1692, 3553
BspANI GGCC 9 cut(s) 350, 497, 2559, 3105, 3174, 3426, 3775, 3934, 4816
BspFNI CGCG 5 cut(s) 312, 320, 333, 371, 491
BspHI TCATGA 2 cut(s) 2299, 3469
BspMI ACCTGC 1 cut(s) 1084
BspPI GGATC 9 cut(s) 152, 1379, 2964, 3635, 4343, 4356, 4473, 4486, 5135
BspQI GCTCTTC 6 cut(s) 300, 966, 1632, 2145, 2683, 3730
BspT107I GGYRCC 2 cut(s) 4, 1535
BspTI CTTAAG 2 cut(s) 1865, 3430
BsrDI GCAATG 7 cut(s) 721, 1446, 2080, 3272, 3501, 4767, 5044
BsrGI TGTACA 1 cut(s) 3115
BssHII GCGCGC 1 cut(s) 310
BssNI GRCGYC 4 cut(s) 252, 380, 423, 552
BssSI CACGAG 2 cut(s) 2592, 4743
BssT1I CCWWGG 7 cut(s) 282, 1034, 3354, 3982, 4563, 4811, 5151
Bst2BI CACGAG 2 cut(s) 2592, 4743
Bst2UI CCWGG 4 cut(s) 3107, 3334, 4194, 4839
BstACI GRCGYC 4 cut(s) 252, 380, 423, 552
BstAFI CTTAAG 2 cut(s) 1865, 3430
BstAPI GCANNNNNTGC 2 cut(s) 2345, 3283
BstAUI TGTACA 1 cut(s) 3115
BstBAI YACGTR 3 cut(s) 325, 2555, 3314
BstDSI CCRYGG 2 cut(s) 489, 4464
BstENI CCTNNNNNAGG 1 cut(s) 930
BstFNI CGCG 5 cut(s) 312, 320, 333, 371, 491
BstHHI GCGC 7 cut(s) 312, 314, 322, 333, 371, 457, 777
BstMAI GTCTC 3 cut(s) 259, 2094, 2616
BstMCI CGRYCG 1 cut(s) 543
BstNI CCWGG 4 cut(s) 3107, 3334, 4194, 4839
BstSCI CCNGG 5 cut(s) 3105, 3332, 3660, 4192, 4837
BstSFI CTRYAG 7 cut(s) 757, 1965, 2838, 3411, 4017, 4140, 4317
BstSNI TACGTA 1 cut(s) 3314
BstUI CGCG 5 cut(s) 312, 320, 333, 371, 491
BstV2I GAAGAC 1 cut(s) 2219
BstX2I RGATCY 4 cut(s) 2956, 3640, 4348, 4478
BstXI CCANNNNNNTGG 1 cut(s) 4256
BstYI RGATCY 4 cut(s) 2956, 3640, 4348, 4478
Bsu36I CCTNAGG 1 cut(s) 3702
BsuI GTATCC 3 cut(s) 1291, 1749, 4271
BsuRI GGCC 9 cut(s) 350, 497, 2559, 3105, 3174, 3426, 3775, 3934, 4816
BtgI CCRYGG 2 cut(s) 489, 4464
BtgZI GCGATG 1 cut(s) 693
BtrI CACGTC 1 cut(s) 535
BtsI GCAGTG 5 cut(s) 118, 1374, 2346, 3063, 5039
BveI ACCTGC 1 cut(s) 1084
CaiI CAGNNNCTG 5 cut(s) 2072, 4850, 5120, 5437, 5570
CciI TCATGA 2 cut(s) 2299, 3469
CfoI GCGC 7 cut(s) 312, 314, 322, 333, 371, 457, 777
Cfr13I GGNCC 8 cut(s) 403, 2795, 3047, 3173, 3299, 4124, 4461, 5291
Cfr42I CCGCGG 1 cut(s) 492
CseI GACGC 8 cut(s) 262, 360, 388, 431, 560, 2048, 3872, 5514
CsiI ACCWGGT 1 cut(s) 4192
Csp6I GTAC 9 cut(s) 920, 2657, 3116, 3315, 3343, 3987, 4976, 4986, 5066
CspCI CAANNNNNGTGG 2 cut(s) 1311, 1346
CviQI GTAC 9 cut(s) 920, 2657, 3116, 3315, 3343, 3987, 4976, 4986, 5066
DraI TTTAAA 1 cut(s) 237
DrdI GACNNNNNNGTC 1 cut(s) 539
DriI GACNNNNNGTC 1 cut(s) 427
DseDI GACNNNNNNGTC 1 cut(s) 539
EaeI YGGCCR 2 cut(s) 495, 4814
Eam1105I GACNNNNNGTC 1 cut(s) 427
EciI GGCGGA 3 cut(s) 375, 502, 1097
Ecl136II GAGCTC 1 cut(s) 3723
Eco105I TACGTA 1 cut(s) 3314
Eco130I CCWWGG 7 cut(s) 282, 1034, 3354, 3982, 4563, 4811, 5151
Eco147I AGGCCT 2 cut(s) 3105, 3775
Eco24I GRGCYC 2 cut(s) 2416, 3725
Eco32I GATATC 2 cut(s) 2902, 3134
Eco47I GGWCC 7 cut(s) 403, 2795, 3047, 3299, 4124, 4461, 5291
Eco53kI GAGCTC 1 cut(s) 3723
Eco72I CACGTG 1 cut(s) 325
Eco81I CCTNAGG 1 cut(s) 3702
Eco88I CYCGRG 1 cut(s) 4680
EcoICRI GAGCTC 1 cut(s) 3723
EcoNI CCTNNNNNAGG 1 cut(s) 930
EcoRI GAATTC 3 cut(s) 1314, 2429, 5102
EcoRII CCWGG 4 cut(s) 3105, 3332, 4192, 4837
EcoRV GATATC 2 cut(s) 2902, 3134
EcoT14I CCWWGG 7 cut(s) 282, 1034, 3354, 3982, 4563, 4811, 5151
EcoT22I ATGCAT 2 cut(s) 2217, 3409
EcoT38I GRGCYC 2 cut(s) 2416, 3725
ErhI CCWWGG 7 cut(s) 282, 1034, 3354, 3982, 4563, 4811, 5151
Esp3I CGTCTC 1 cut(s) 259
FalI AAGNNNNNCTT 6 cut(s) 693, 725, 1671, 1703, 2124, 2156
FaqI GGGAC 8 cut(s) 1259, 1854, 1861, 2272, 3403, 4474, 4584, 4781
FauI CCCGC 3 cut(s) 633, 3810, 4780
FauNDI CATATG 3 cut(s) 2755, 3793, 5470
FbaI TGATCA 2 cut(s) 682, 1519
FblI GTMKAC 5 cut(s) 543, 1137, 3861, 4049, 5464
FriOI GRGCYC 2 cut(s) 2416, 3725
FspI TGCGCA 1 cut(s) 456
GlaI GCGC 7 cut(s) 311, 313, 321, 332, 370, 456, 776
GsaI CCCAGC 2 cut(s) 3682, 5117
GsuI CTGGAG 4 cut(s) 1347, 2400, 2877, 5169
HaeIII GGCC 9 cut(s) 350, 497, 2559, 3105, 3174, 3426, 3775, 3934, 4816
HapII CCGG 5 cut(s) 395, 444, 516, 675, 3662
HgaI GACGC 8 cut(s) 262, 360, 388, 431, 560, 2048, 3872, 5514
HhaI GCGC 7 cut(s) 312, 314, 322, 333, 371, 457, 777
Hin1I GRCGYC 4 cut(s) 252, 380, 423, 552
Hin6I GCGC 7 cut(s) 310, 312, 320, 331, 369, 455, 775
HinP1I GCGC 7 cut(s) 310, 312, 320, 331, 369, 455, 775
HincII GTYRAC 6 cut(s) 175, 544, 1138, 1276, 4964, 5465
HindII GTYRAC 6 cut(s) 175, 544, 1138, 1276, 4964, 5465
HindIII AAGCTT 5 cut(s) 707, 738, 978, 1694, 3293
HpaI GTTAAC 1 cut(s) 1276
HpaII CCGG 5 cut(s) 395, 444, 516, 675, 3662
Hpy99I CGWCG 7 cut(s) 139, 155, 361, 382, 425, 800, 1142
Hsp92I GRCGYC 4 cut(s) 252, 380, 423, 552
HspAI GCGC 7 cut(s) 310, 312, 320, 331, 369, 455, 775
Ksp22I TGATCA 2 cut(s) 682, 1519
KspAI GTTAAC 1 cut(s) 1276
KspI CCGCGG 1 cut(s) 492
LguI GCTCTTC 6 cut(s) 300, 966, 1632, 2145, 2683, 3730
MabI ACCWGGT 1 cut(s) 4192
MfeI CAATTG 1 cut(s) 3216
MflI RGATCY 4 cut(s) 2956, 3640, 4348, 4478
MhlI GDGCHC 4 cut(s) 2416, 3022, 3725, 4880
MlsI TGGCCA 1 cut(s) 4816
MluNI TGGCCA 1 cut(s) 4816
MmeI TCCRAC 2 cut(s) 4641, 5335
Mox20I TGGCCA 1 cut(s) 4816
Mph1103I ATGCAT 2 cut(s) 2217, 3409
MroXI GAANNNNTTC 3 cut(s) 1112, 3696, 5393
MscI TGGCCA 1 cut(s) 4816
MslI CAYNNNNRTG 8 cut(s) 89, 663, 1620, 1935, 2582, 3083, 4254, 5032
Msp20I TGGCCA 1 cut(s) 4816
MspA1I CMGCKG 7 cut(s) 491, 628, 1208, 1394, 3194, 3814, 4673
MspCI CTTAAG 2 cut(s) 1865, 3430
MspI CCGG 5 cut(s) 395, 444, 516, 675, 3662
MspR9I CCNGG 5 cut(s) 3107, 3334, 3662, 4194, 4839
MunI CAATTG 1 cut(s) 3216
Mva1269I GAATGC 7 cut(s) 777, 1112, 2295, 2452, 4236, 5320, 5448
MvaI CCWGG 4 cut(s) 3107, 3334, 4194, 4839
MvnI CGCG 5 cut(s) 312, 320, 333, 371, 491
NciI CCSGG 1 cut(s) 3662
NdeI CATATG 3 cut(s) 2755, 3793, 5470
NmeAIII GCCGAG 1 cut(s) 580
NmuCI GTSAC 8 cut(s) 372, 530, 646, 785, 1405, 1442, 4996, 5333
NsbI TGCGCA 1 cut(s) 456
NsiI ATGCAT 2 cut(s) 2217, 3409
PaeI GCATGC 2 cut(s) 1934, 2676
PagI TCATGA 2 cut(s) 2299, 3469
PasI CCCWGGG 1 cut(s) 4838
PauI GCGCGC 1 cut(s) 310
PceI AGGCCT 2 cut(s) 3105, 3775
PciI ACATGT 6 cut(s) 658, 1199, 2278, 3041, 3118, 3736
PciSI GCTCTTC 6 cut(s) 300, 966, 1632, 2145, 2683, 3730
PcsI WCGNNNNNNNCGW 3 cut(s) 330, 386, 540
PctI GAATGC 7 cut(s) 777, 1112, 2295, 2452, 4236, 5320, 5448
PdmI GAANNNNTTC 3 cut(s) 1112, 3696, 5393
PflMI CCANNNNNTGG 2 cut(s) 2189, 5098
PmaCI CACGTG 1 cut(s) 325
PmlI CACGTG 1 cut(s) 325
Ppu21I YACGTR 3 cut(s) 325, 2555, 3314
PscI ACATGT 6 cut(s) 658, 1199, 2278, 3041, 3118, 3736
Psp124BI GAGCTC 1 cut(s) 3725
Psp1406I AACGTT 1 cut(s) 232
Psp6I CCWGG 4 cut(s) 3105, 3332, 4192, 4837
PspCI CACGTG 1 cut(s) 325
PspFI CCCAGC 2 cut(s) 3678, 5113
PspGI CCWGG 4 cut(s) 3105, 3332, 4192, 4837
PspPI GGNCC 8 cut(s) 403, 2795, 3047, 3173, 3299, 4124, 4461, 5291
PstNI CAGNNNCTG 5 cut(s) 2072, 4850, 5120, 5437, 5570
PsuI RGATCY 4 cut(s) 2956, 3640, 4348, 4478
PteI GCGCGC 1 cut(s) 310
PvuII CAGCTG 2 cut(s) 1208, 4673
RsaI GTAC 9 cut(s) 921, 2658, 3117, 3316, 3344, 3988, 4977, 4987, 5067
RsaNI GTAC 9 cut(s) 920, 2657, 3116, 3315, 3343, 3987, 4976, 4986, 5066
RseI CAYNNNNRTG 8 cut(s) 89, 663, 1620, 1935, 2582, 3083, 4254, 5032
SacI GAGCTC 1 cut(s) 3725
SacII CCGCGG 1 cut(s) 492
SalI GTCGAC 3 cut(s) 542, 1136, 5463
SapI GCTCTTC 6 cut(s) 300, 966, 1632, 2145, 2683, 3730
Sau96I GGNCC 8 cut(s) 403, 2795, 3047, 3173, 3299, 4124, 4461, 5291
ScaI AGTACT 1 cut(s) 3344
ScrFI CCNGG 5 cut(s) 3107, 3334, 3662, 4194, 4839
SduI GDGCHC 4 cut(s) 2416, 3022, 3725, 4880
SexAI ACCWGGT 1 cut(s) 4192
SfcI CTRYAG 7 cut(s) 757, 1965, 2838, 3411, 4017, 4140, 4317
Sfr303I CCGCGG 1 cut(s) 492
SgrBI CCGCGG 1 cut(s) 492
SinI GGWCC 7 cut(s) 403, 2795, 3047, 3299, 4124, 4461, 5291
SmiMI CAYNNNNRTG 8 cut(s) 89, 663, 1620, 1935, 2582, 3083, 4254, 5032
SmlI CTYRAG 7 cut(s) 263, 413, 504, 575, 1865, 3338, 3430
SmoI CTYRAG 7 cut(s) 263, 413, 504, 575, 1865, 3338, 3430
SnaBI TACGTA 1 cut(s) 3314
SpeI ACTAGT 1 cut(s) 5000
SphI GCATGC 2 cut(s) 1934, 2676
SseBI AGGCCT 2 cut(s) 3105, 3775
SspI AATATT 2 cut(s) 1900, 4831
SstI GAGCTC 1 cut(s) 3725
StuI AGGCCT 2 cut(s) 3105, 3775
StyD4I CCNGG 5 cut(s) 3105, 3332, 3660, 4192, 4837
StyI CCWWGG 7 cut(s) 282, 1034, 3354, 3982, 4563, 4811, 5151
TatI WGTACW 3 cut(s) 2656, 3115, 3342
TauI GCSGC 7 cut(s) 331, 491, 494, 497, 3197, 3802, 3817
TseFI GTSAC 8 cut(s) 372, 530, 646, 785, 1405, 1442, 4996, 5333
Tsp45I GTSAC 8 cut(s) 372, 530, 646, 785, 1405, 1442, 4996, 5333
TspGWI ACGGA 2 cut(s) 152, 4015
Van91I CCANNNNNTGG 2 cut(s) 2189, 5098
Vha464I CTTAAG 2 cut(s) 1865, 3430
VpaK11BI GGWCC 7 cut(s) 403, 2795, 3047, 3299, 4124, 4461, 5291
XagI CCTNNNNNAGG 1 cut(s) 930
XapI RAATTY 8 cut(s) 1314, 2429, 3279, 3709, 3992, 4300, 5102, 5163
XmiI GTMKAC 5 cut(s) 543, 1137, 3861, 4049, 5464
XmnI GAANNNNTTC 3 cut(s) 1112, 3696, 5393
ZraI GACGTC 1 cut(s) 253
ZrmI AGTACT 1 cut(s) 3344
Zsp2I ATGCAT 2 cut(s) 2217, 3409
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.