Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006950

Physical Location & Seq

Genomic Coordinates Forward (+)

16320463 .. 16321760

Gene Structure 1298 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g19910.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGAAGATTAAGGTAGGTTGGGTGCTGGTCGTTGCTCTGCTTGTATCCGTCTTTTTTGCTCCAACTGCATATGCCGTGTGGCGCAATAAGAATACTGAAGTAGCCAACTTTGCCTCTGTTGCCGACGATCATGATGGTAATGATGAGGAAGATGGGTGCACAGGTTCAGTATGCAATATAGTCCAGTTCCCTTGTCATGAAGGCTGTGTTTGCGTCCCCATTGGAATGTTACCTATAGGGATCTGCGCTGGTACCTGTTGTGGTACTCCCTCTCCTTCTCCGTCTCCAACACCACCGTCGCCTCCCGAACCACCGTCACCTGCTCCCAAGCCACCGACACCACCTCATCCTAGTCCACCAGCACCTCCCAAGCCACCCACGCCTCCTCATCCTAGTCCACCAACGCCTCCCAAGCCACCGACGCCTCCTCATCCTAGTCCACCAGCGCCTCCCAAGCCACCGACGCCTCCTCATCCTAGTCCACCAGCGCCTCCCAAACCACCAAACCCTCCTCATCCTAGTCCACCAACGCCTCCTCATCCTAGCCCACCAGCGCCTCCTCATCCTAGTCCACCAACGCCTCCTCATCCTAGTCCACCAGCGCCTCCCAAGCCACCATCACCTTGTCCAACTCCACCACCTCATCCCTCTGATGCTAGCGCACTGTCTTCCGAAGCCACTGTTAGTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

231

Amino Acids

23.36

Weight (kDa)

6.57

Isoelectric Point (pI)

94.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g19910 FvH4_7g19930 FvH4_7g19950
prunus_persica	Prupe.2G216100_v2.0.a1 Prupe.2G216200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363911 RchiOBHm_Chr1g0363921 RchiOBHm_Chr7g0226451
rosa_laevigata	RLG00000027535 RLG00000027536 RLG00000027537
rosa_multiflora	Rmu_sc0001695.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004040 Rroxscaffold_4G00292840 Rroxscaffold_4G00292860 Rroxscaffold_4G00292870
rosa_rugosa	Rorug01G0310900 Rorug01G0311000 Rorug01G0311100
rosa_samantha	Rh1AG318900 Rh1AG319100 Rh1BG282000 Rh1BG282100 Rh1CG298500 Rh1DG313400 Rh1DG313500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	328
Acc36I	ACCTGC	1 cut(s)	328
Acc65I	GGTACC	1 cut(s)	251
AccB1I	GGYRCC	1 cut(s)	251
AclWI	GGATC	1 cut(s)	248
AcuI	CTGAAG	1 cut(s)	117
AcyI	GRCGYC	2 cut(s)	422, 464
AfaI	GTAC	2 cut(s)	253, 265
Alw21I	GWGCWC	1 cut(s)	161
Alw26I	GTCTC	1 cut(s)	288
Alw44I	GTGCAC	1 cut(s)	157
AlwI	GGATC	1 cut(s)	248
ApaLI	GTGCAC	1 cut(s)	157
Asp718I	GGTACC	1 cut(s)	251
AspLEI	GCGC	7 cut(s)	84, 248, 448, 490, 556, 604, 662
AsuHPI	GGTGA	2 cut(s)	309, 612
AsuNHI	GCTAGC	1 cut(s)	656
BaeGI	GKGCMC	1 cut(s)	161
BanI	GGYRCC	1 cut(s)	251
BbsI	GAAGAC	1 cut(s)	660
Bbv12I	GWGCWC	1 cut(s)	161
BccI	CCATC	3 cut(s)	128, 146, 625
BceAI	ACGGC	1 cut(s)	59
BciVI	GTATCC	1 cut(s)	55
BcoDI	GTCTC	1 cut(s)	288
BfaI	CTAG	9 cut(s)	351, 393, 435, 477, 519, 543, 567, 591, 657
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	4 cut(s)	449, 491, 557, 605
BfuAI	ACCTGC	1 cut(s)	328
BfuI	GTATCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	253
BmsI	GCATC	1 cut(s)	643
BmtI	GCTAGC	1 cut(s)	660
BpiI	GAAGAC	1 cut(s)	660
BsaHI	GRCGYC	2 cut(s)	422, 464
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bse1I	ACTGG	1 cut(s)	184
BseGI	GGATG	9 cut(s)	346, 388, 430, 472, 514, 538, 562, 586, 643
BseNI	ACTGG	1 cut(s)	184
BseRI	GAGGAG	7 cut(s)	375, 417, 459, 501, 525, 549, 573
BseSI	GKGCMC	1 cut(s)	161
BshNI	GGYRCC	1 cut(s)	251
BsiHKAI	GWGCWC	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	200
BsmAI	GTCTC	1 cut(s)	288
BsmBI	CGTCTC	1 cut(s)	288
BsmFI	GGGAC	1 cut(s)	200
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	2 cut(s)	127, 240
BspHI	TCATGA	2 cut(s)	130, 196
BspLI	GGNNCC	1 cut(s)	253
BspMI	ACCTGC	1 cut(s)	328
BspOI	GCTAGC	1 cut(s)	660
BspPI	GGATC	1 cut(s)	248
BspT107I	GGYRCC	1 cut(s)	251
BsrI	ACTGG	1 cut(s)	184
BssMI	GATC	2 cut(s)	127, 240
BssNI	GRCGYC	2 cut(s)	422, 464
Bst4CI	ACNGT	4 cut(s)	297, 315, 666, 682
BstACI	GRCGYC	2 cut(s)	422, 464
BstC8I	GCNNGC	1 cut(s)	658
BstF5I	GGATG	9 cut(s)	346, 388, 430, 472, 514, 538, 562, 586, 643
BstH2I	RGCGCY	4 cut(s)	449, 491, 557, 605
BstHHI	GCGC	7 cut(s)	84, 248, 448, 490, 556, 604, 662
BstKTI	GATC	2 cut(s)	130, 243
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	2 cut(s)	127, 240
BstSFI	CTRYAG	1 cut(s)	234
BstSLI	GKGCMC	1 cut(s)	161
BstV2I	GAAGAC	1 cut(s)	660
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
BsuI	GTATCC	1 cut(s)	55
BtsCI	GGATG	9 cut(s)	346, 388, 430, 472, 514, 538, 562, 586, 643
BtsIMutI	CAGTG	2 cut(s)	662, 678
BveI	ACCTGC	1 cut(s)	328
Cac8I	GCNNGC	1 cut(s)	658
CciI	TCATGA	2 cut(s)	130, 196
CfoI	GCGC	7 cut(s)	84, 248, 448, 490, 556, 604, 662
CseI	GACGC	3 cut(s)	202, 430, 472
Csp6I	GTAC	2 cut(s)	252, 264
CviAII	CATG	2 cut(s)	131, 197
CviJI	RGCY	9 cut(s)	104, 204, 331, 373, 415, 457, 546, 613, 677
CviKI_1	RGCY	9 cut(s)	104, 204, 331, 373, 415, 457, 546, 613, 677
CviQI	GTAC	2 cut(s)	252, 264
DpnI	GATC	2 cut(s)	129, 242
DpnII	GATC	2 cut(s)	127, 240
Eco57I	CTGAAG	1 cut(s)	117
Esp3I	CGTCTC	1 cut(s)	288
FaeI	CATG	2 cut(s)	134, 200
FaiI	YATR	7 cut(s)	70, 72, 132, 172, 179, 198, 236
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	2 cut(s)	130, 196
FauNDI	CATATG	1 cut(s)	70
FokI	GGATG	9 cut(s)	333, 375, 417, 459, 501, 525, 549, 573, 630
FspBI	CTAG	9 cut(s)	351, 393, 435, 477, 519, 543, 567, 591, 657
GlaI	GCGC	7 cut(s)	83, 247, 447, 489, 555, 603, 661
HaeII	RGCGCY	4 cut(s)	449, 491, 557, 605
HgaI	GACGC	3 cut(s)	202, 430, 472
HhaI	GCGC	7 cut(s)	84, 248, 448, 490, 556, 604, 662
Hin1I	GRCGYC	2 cut(s)	422, 464
Hin1II	CATG	2 cut(s)	134, 200
Hin6I	GCGC	7 cut(s)	82, 246, 446, 488, 554, 602, 660
HinP1I	GCGC	7 cut(s)	82, 246, 446, 488, 554, 602, 660
HphI	GGTGA	2 cut(s)	309, 612
Hpy166II	GTNNAC	8 cut(s)	159, 356, 398, 440, 482, 524, 572, 596
Hpy188I	TCNGA	3 cut(s)	652, 673, 692
Hpy188III	TCNNGA	3 cut(s)	131, 197, 305
Hpy8I	GTNNAC	8 cut(s)	159, 356, 398, 440, 482, 524, 572, 596
Hpy99I	CGWCG	4 cut(s)	128, 301, 424, 466
HpyAV	CCTTC	2 cut(s)	194, 285
HpyCH4III	ACNGT	4 cut(s)	297, 315, 666, 682
HpyCH4V	TGCA	3 cut(s)	68, 159, 174
Hsp92I	GRCGYC	2 cut(s)	422, 464
Hsp92II	CATG	2 cut(s)	134, 200
HspAI	GCGC	7 cut(s)	82, 246, 446, 488, 554, 602, 660
KpnI	GGTACC	1 cut(s)	255
Kzo9I	GATC	2 cut(s)	127, 240
LmnI	GCTCC	2 cut(s)	64, 328
LweI	GCATC	1 cut(s)	643
MaeI	CTAG	9 cut(s)	351, 393, 435, 477, 519, 543, 567, 591, 657
MaeIII	GTNAC	2 cut(s)	228, 315
MalI	GATC	2 cut(s)	129, 242
MboI	GATC	2 cut(s)	127, 240
MboII	GAAGA	3 cut(s)	16, 161, 660
MflI	RGATCY	1 cut(s)	240
MhlI	GDGCHC	1 cut(s)	161
MmeI	TCCRAC	3 cut(s)	86, 311, 653
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	224
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	2 cut(s)	127, 240
NheI	GCTAGC	1 cut(s)	656
NlaIII	CATG	2 cut(s)	134, 200
NlaIV	GGNNCC	1 cut(s)	253
NmuCI	GTSAC	1 cut(s)	315
PagI	TCATGA	2 cut(s)	130, 196
PaqCI	CACCTGC	1 cut(s)	328
PspN4I	GGNNCC	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	240
RsaI	GTAC	2 cut(s)	253, 265
RsaNI	GTAC	2 cut(s)	252, 264
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	9
Sau3AI	GATC	2 cut(s)	127, 240
SduI	GDGCHC	1 cut(s)	161
SfaNI	GCATC	1 cut(s)	643
SfcI	CTRYAG	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	224
SspMI	CTAG	9 cut(s)	351, 393, 435, 477, 519, 543, 567, 591, 657
TaaI	ACNGT	4 cut(s)	297, 315, 666, 682
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TscAI	CASTG	2 cut(s)	669, 685
TseFI	GTSAC	1 cut(s)	315
Tsp45I	GTSAC	1 cut(s)	315
TspDTI	ATGAA	2 cut(s)	17, 213
TspGWI	ACGGA	2 cut(s)	37, 270
TspRI	CASTG	2 cut(s)	669, 685
VneI	GTGCAC	1 cut(s)	157
XspI	CTAG	9 cut(s)	351, 393, 435, 477, 519, 543, 567, 591, 657

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.