Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006950

Physical Location & Seq

Genomic Coordinates Forward (+)

54046899 .. 54047387

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG313500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGAGACTAATAAGTTCAGTTTGGTGGTGGTAGTGGCAACGGTGGTTGTGCTCACCTTTTTCACTCCAACTGCCTTCGCCGTGTGGCATACAAATTATGAAGTAGCCTCGGCAGCTGCAGAGCCTGCAGACTCTGACGATCATATTGAAGTAGCCTTGGCCGCGGCTGAGCCTGACCTTGATGAGAGTATTGAAGTAGCCTCGGCCGCTGCTGAGCCTGCGGATCCTGTGGATTATTATGATAATATTATGGTAAAAAACGAAAGCATCATTAGTACTGGGTTAATACGTCGGAAGGTCGATGGTTGTACAACTTCGATATGCAATATGATGTTCAGCCCTTGCAAGATGGGTTGTATTTGCGTTCCCTTTGGAACGCTTCCTATTGGGCTCTGCATTGGTCTCTGTCATTGCAATTTTACTCCACCTCCAGGTCCACAGCCACAGCCGCCTTCAGTCTCACTATCACCGTCACCACTGATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

162

Amino Acids

17.21

Weight (kDa)

4.26

Isoelectric Point (pI)

59.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g19910 FvH4_7g19930 FvH4_7g19950
prunus_persica	Prupe.2G216100_v2.0.a1 Prupe.2G216200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363911 RchiOBHm_Chr1g0363921 RchiOBHm_Chr7g0226451
rosa_laevigata	RLG00000027535 RLG00000027536 RLG00000027537
rosa_multiflora	Rmu_sc0001695.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004040 Rroxscaffold_4G00292840 Rroxscaffold_4G00292860 Rroxscaffold_4G00292870
rosa_rugosa	Rorug01G0310900 Rorug01G0311000 Rorug01G0311100
rosa_samantha	Rh1AG318900 Rh1AG319100 Rh1BG282000 Rh1BG282100 Rh1CG298500 Rh1DG313400 Rh1DG313500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	164
AciI	CCGC	5 cut(s)	162, 164, 207, 221, 449
AclWI	GGATC	2 cut(s)	218, 231
AcoI	YGGCCR	2 cut(s)	159, 204
AcuI	CTGAAG	1 cut(s)	438
AfaI	GTAC	2 cut(s)	277, 310
AfiI	CCNNNNNNNGG	1 cut(s)	431
AgsI	TTSAA	2 cut(s)	149, 194
AjnI	CCWGG	1 cut(s)	430
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	2 cut(s)	407, 463
AlwI	GGATC	2 cut(s)	218, 231
AlwNI	CAGNNNCTG	2 cut(s)	125, 134
AoxI	GGCC	2 cut(s)	159, 204
ApeKI	GCWGC	3 cut(s)	113, 116, 209
AspS9I	GGNCC	1 cut(s)	434
AsuHPI	GGTGA	3 cut(s)	46, 459, 465
AvaII	GGWCC	1 cut(s)	434
BamHI	GGATCC	1 cut(s)	223
BanII	GRGCYC	1 cut(s)	393
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	3 cut(s)	103, 125, 196
BccI	CCATC	2 cut(s)	296, 343
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	432
BcoDI	GTCTC	2 cut(s)	407, 463
BfmI	CTRYAG	2 cut(s)	117, 126
BisI	GCNGC	7 cut(s)	114, 117, 162, 165, 207, 210, 449
BlpI	GCTNAGC	2 cut(s)	168, 213
BlsI	GCNGC	7 cut(s)	115, 118, 163, 166, 208, 211, 450
BmcAI	AGTACT	1 cut(s)	277
Bme1390I	CCNGG	1 cut(s)	432
Bme18I	GGWCC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	434
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	1 cut(s)	432
BmrI	ACTGGG	1 cut(s)	288
BmsI	GCATC	1 cut(s)	276
BmuI	ACTGGG	1 cut(s)	288
BpmI	CTGGAG	1 cut(s)	414
Bpu1102I	GCTNAGC	2 cut(s)	168, 213
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	4 cut(s)	108, 156, 162, 201
BsaXI	ACNNNNNCTCC	2 cut(s)	412, 442
Bsc4I	CCNNNNNNNGG	1 cut(s)	431
Bse1I	ACTGG	1 cut(s)	283
Bse3DI	GCAATG	1 cut(s)	409
BseBI	CCWGG	1 cut(s)	432
BseDI	CCNNGG	4 cut(s)	108, 156, 162, 201
BseLI	CCNNNNNNNGG	1 cut(s)	431
BseMI	GCAATG	1 cut(s)	409
BseMII	CTCAG	2 cut(s)	159, 204
BseNI	ACTGG	1 cut(s)	283
BseX3I	CGGCCG	1 cut(s)	204
BseXI	GCAGC	3 cut(s)	103, 125, 196
Bsh1236I	CGCG	1 cut(s)	164
Bsh1285I	CGRYCG	1 cut(s)	207
BshFI	GGCC	2 cut(s)	161, 206
BsiEI	CGRYCG	1 cut(s)	207
BsiHKAI	GWGCWC	1 cut(s)	54
BslI	CCNNNNNNNGG	1 cut(s)	431
BsmAI	GTCTC	2 cut(s)	407, 463
BsnI	GGCC	2 cut(s)	161, 206
Bso31I	GGTCTC	1 cut(s)	407
Bsp1286I	GDGCHC	2 cut(s)	54, 393
Bsp1407I	TGTACA	1 cut(s)	308
Bsp143I	GATC	2 cut(s)	139, 223
Bsp1720I	GCTNAGC	2 cut(s)	168, 213
BspACI	CCGC	5 cut(s)	162, 164, 207, 221, 449
BspANI	GGCC	2 cut(s)	161, 206
BspCNI	CTCAG	2 cut(s)	160, 205
BspFNI	CGCG	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	225
BspMAI	CTGCAG	2 cut(s)	121, 130
BspPI	GGATC	2 cut(s)	218, 231
BspTNI	GGTCTC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	409
BsrGI	TGTACA	1 cut(s)	308
BsrI	ACTGG	1 cut(s)	283
BssECI	CCNNGG	4 cut(s)	108, 156, 162, 201
BssMI	GATC	2 cut(s)	139, 223
BssT1I	CCWWGG	1 cut(s)	156
Bst2UI	CCWGG	1 cut(s)	432
Bst4CI	ACNGT	2 cut(s)	43, 471
BstAPI	GCANNNNNTGC	1 cut(s)	125
BstAUI	TGTACA	1 cut(s)	308
BstC8I	GCNNGC	2 cut(s)	126, 219
BstDEI	CTNAG	2 cut(s)	168, 213
BstDSI	CCRYGG	1 cut(s)	162
BstFNI	CGCG	1 cut(s)	164
BstKTI	GATC	2 cut(s)	142, 226
BstMAI	GTCTC	2 cut(s)	407, 463
BstMBI	GATC	2 cut(s)	139, 223
BstMCI	CGRYCG	1 cut(s)	207
BstMWI	GCNNNNNNNGC	6 cut(s)	113, 125, 161, 206, 218, 448
BstNI	CCWGG	1 cut(s)	432
BstSCI	CCNGG	1 cut(s)	430
BstSFI	CTRYAG	2 cut(s)	117, 126
BstUI	CGCG	1 cut(s)	164
BstV1I	GCAGC	3 cut(s)	103, 125, 196
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BstZI	CGGCCG	1 cut(s)	204
BsuRI	GGCC	2 cut(s)	161, 206
BtgI	CCRYGG	1 cut(s)	162
BtsIMutI	CAGTG	1 cut(s)	476
Cac8I	GCNNGC	2 cut(s)	126, 219
CaiI	CAGNNNCTG	2 cut(s)	125, 134
Cfr13I	GGNCC	1 cut(s)	434
Cfr42I	CCGCGG	1 cut(s)	165
Csp6I	GTAC	2 cut(s)	276, 309
CviQI	GTAC	2 cut(s)	276, 309
DdeI	CTNAG	2 cut(s)	168, 213
DpnI	GATC	2 cut(s)	141, 225
DpnII	GATC	2 cut(s)	139, 223
EaeI	YGGCCR	2 cut(s)	159, 204
EagI	CGGCCG	1 cut(s)	204
EclXI	CGGCCG	1 cut(s)	204
Eco130I	CCWWGG	1 cut(s)	156
Eco24I	GRGCYC	1 cut(s)	393
Eco31I	GGTCTC	1 cut(s)	407
Eco47I	GGWCC	1 cut(s)	434
Eco52I	CGGCCG	1 cut(s)	204
Eco57I	CTGAAG	1 cut(s)	438
EcoRII	CCWGG	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	156
EcoT38I	GRGCYC	1 cut(s)	393
ErhI	CCWWGG	1 cut(s)	156
FaiI	YATR	7 cut(s)	90, 99, 144, 240, 251, 322, 329
Fnu4HI	GCNGC	7 cut(s)	114, 117, 162, 165, 207, 210, 449
FriOI	GRGCYC	1 cut(s)	393
Fsp4HI	GCNGC	7 cut(s)	114, 117, 162, 165, 207, 210, 449
GluI	GCNGC	7 cut(s)	114, 117, 162, 165, 207, 210, 449
GsuI	CTGGAG	1 cut(s)	414
HaeIII	GGCC	2 cut(s)	161, 206
HinfI	GANTC	1 cut(s)	131
HphI	GGTGA	3 cut(s)	46, 459, 465
Hpy166II	GTNNAC	1 cut(s)	437
Hpy188I	TCNGA	2 cut(s)	136, 294
Hpy8I	GTNNAC	1 cut(s)	437
Hpy99I	CGWCG	1 cut(s)	294
HpyAV	CCTTC	3 cut(s)	85, 289, 462
HpyCH4III	ACNGT	2 cut(s)	43, 471
HpyCH4IV	ACGT	1 cut(s)	289
HpyCH4V	TGCA	6 cut(s)	119, 128, 324, 345, 396, 414
HpyF10VI	GCNNNNNNNGC	6 cut(s)	113, 125, 161, 206, 218, 448
HpyF3I	CTNAG	2 cut(s)	168, 213
HpySE526I	ACGT	1 cut(s)	289
KspI	CCGCGG	1 cut(s)	165
Kzo9I	GATC	2 cut(s)	139, 223
LpnPI	CCDG	7 cut(s)	138, 186, 231, 240, 264, 417, 444
Lsp1109I	GCAGC	3 cut(s)	103, 125, 196
LweI	GCATC	1 cut(s)	276
MaeII	ACGT	1 cut(s)	289
MaeIII	GTNAC	1 cut(s)	471
MalI	GATC	2 cut(s)	141, 225
MboI	GATC	2 cut(s)	139, 223
MflI	RGATCY	1 cut(s)	223
MhlI	GDGCHC	2 cut(s)	54, 393
MluCI	AATT	2 cut(s)	94, 415
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	2 cut(s)	92, 272
MnlI	CCTC	3 cut(s)	118, 211, 438
MseI	TTAA	1 cut(s)	284
MspA1I	CMGCKG	3 cut(s)	116, 164, 209
MspR9I	CCNGG	1 cut(s)	432
MvaI	CCWGG	1 cut(s)	432
MvnI	CGCG	1 cut(s)	164
MwoI	GCNNNNNNNGC	6 cut(s)	113, 125, 161, 206, 218, 448
NdeII	GATC	2 cut(s)	139, 223
NlaIV	GGNNCC	1 cut(s)	225
NmeAIII	GCCGAG	2 cut(s)	89, 182
NmuCI	GTSAC	1 cut(s)	471
PkrI	GCNGC	7 cut(s)	115, 118, 163, 166, 208, 211, 450
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Psp6I	CCWGG	1 cut(s)	430
PspGI	CCWGG	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	1 cut(s)	434
PstI	CTGCAG	2 cut(s)	121, 130
PstNI	CAGNNNCTG	2 cut(s)	125, 134
PsuI	RGATCY	1 cut(s)	223
PvuII	CAGCTG	1 cut(s)	116
RsaI	GTAC	2 cut(s)	277, 310
RsaNI	GTAC	2 cut(s)	276, 309
SacII	CCGCGG	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	284
SatI	GCNGC	7 cut(s)	114, 117, 162, 165, 207, 210, 449
Sau3AI	GATC	2 cut(s)	139, 223
Sau96I	GGNCC	1 cut(s)	434
ScaI	AGTACT	1 cut(s)	277
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	1 cut(s)	432
SduI	GDGCHC	2 cut(s)	54, 393
SetI	ASST	7 cut(s)	59, 118, 180, 292, 300, 430, 436
SfaNI	GCATC	1 cut(s)	276
SfcI	CTRYAG	2 cut(s)	117, 126
Sfr303I	CCGCGG	1 cut(s)	165
SgrBI	CCGCGG	1 cut(s)	165
SinI	GGWCC	1 cut(s)	434
Sse9I	AATT	2 cut(s)	94, 415
SsiI	CCGC	5 cut(s)	162, 164, 207, 221, 449
SspI	AATATT	1 cut(s)	247
StyD4I	CCNGG	1 cut(s)	430
StyI	CCWWGG	1 cut(s)	156
TaaI	ACNGT	2 cut(s)	43, 471
TaiI	ACGT	1 cut(s)	292
TaqI	TCGA	2 cut(s)	300, 317
TasI	AATT	2 cut(s)	94, 415
TatI	WGTACW	2 cut(s)	275, 308
TauI	GCSGC	4 cut(s)	164, 167, 209, 451
Tru1I	TTAA	1 cut(s)	284
Tru9I	TTAA	1 cut(s)	284
TscAI	CASTG	1 cut(s)	483
TseFI	GTSAC	1 cut(s)	471
TseI	GCWGC	3 cut(s)	113, 116, 209
Tsp45I	GTSAC	1 cut(s)	471
TspDTI	ATGAA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	483
VpaK11BI	GGWCC	1 cut(s)	434
ZrmI	AGTACT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.