Rorug01G0311000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0006950
Physical Location & Seq
Forward (+)
42826243 .. 42827420
1178 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0311000.1

Sequence Viewer

Length: 396 bp
ATGGCAGGATACAATAATATTACTGCTGCATTTGCTGTGATGGTGATAGCTTTTTTGGTTTTCCGGCCGGCAAGCATGGTAGTGTTGGCAGATTATATCTTTGCTGTCGGAGAAGACACTGGCTGGAATGATCAACGTTATGATTACCAGGCTTGGGCTGATAACTATTTTTACAATCCTGGAGATACGCTATTTTTCTTGTACGATCCAGGTCTATATGACGTTGTTGTTGCAGGCAGTGCTGAGTTGTTTGATGCATGTTCTATCGATCACAACTTGGGTTTTTATCATACTGGCCGGGACGAGTTAGTCTTGCCAACCCCTGGGACCTATTATTTCTTTGATAGGGCCACATGCAAAGATTTTCACATGAAGTTCTACGTGAATGTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

131

Amino Acids

14.96

Weight (kDa)

4.25

Isoelectric Point (pI)

32.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cu_bind_like PF02298 42 - 115 2.8e-11 Plastocyanin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 308
AccB7I CCANNNNNTGG 1 cut(s) 323
AclI AACGTT 1 cut(s) 136
AclWI GGATC 1 cut(s) 200
AcoI YGGCCR 2 cut(s) 65, 295
AfaI GTAC 1 cut(s) 203
AfiI CCNNNNNNNGG 2 cut(s) 154, 323
AjnI CCWGG 4 cut(s) 147, 178, 208, 322
AluBI AGCT 1 cut(s) 50
AluI AGCT 1 cut(s) 50
AlwI GGATC 1 cut(s) 200
AoxI GGCC 3 cut(s) 65, 295, 348
ApeKI GCWGC 1 cut(s) 26
AspS9I GGNCC 2 cut(s) 327, 348
AsuC2I CCSGG 1 cut(s) 299
AsuHPI GGTGA 1 cut(s) 55
AvaII GGWCC 1 cut(s) 327
BbsI GAAGAC 1 cut(s) 120
BbvI GCAGC 1 cut(s) 13
BccI CCATC 1 cut(s) 34
BciT130I CCWGG 4 cut(s) 149, 180, 210, 324
BclI TGATCA 1 cut(s) 130
BcnI CCSGG 1 cut(s) 299
BisI GCNGC 1 cut(s) 27
BlsI GCNGC 1 cut(s) 28
Bme1390I CCNGG 5 cut(s) 149, 180, 210, 299, 324
Bme18I GGWCC 1 cut(s) 327
BmgT120I GGNCC 2 cut(s) 327, 348
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 5 cut(s) 149, 180, 210, 299, 324
BmsI GCATC 1 cut(s) 244
BpiI GAAGAC 1 cut(s) 120
BpmI CTGGAG 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 299
Bsa29I ATCGAT 1 cut(s) 267
BsaAI YACGTR 1 cut(s) 382
BsaJI CCNNGG 2 cut(s) 322, 323
Bsc4I CCNNNNNNNGG 2 cut(s) 154, 323
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 2 cut(s) 124, 298
BseBI CCWGG 4 cut(s) 149, 180, 210, 324
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 322, 323
BseLI CCNNNNNNNGG 2 cut(s) 154, 323
BseMII CTCAG 1 cut(s) 234
BseNI ACTGG 2 cut(s) 124, 298
BseX3I CGGCCG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 13
Bsh1285I CGRYCG 1 cut(s) 68
BshFI GGCC 3 cut(s) 67, 297, 350
BshVI ATCGAT 1 cut(s) 267
BsiEI CGRYCG 1 cut(s) 68
BsiSI CCGG 3 cut(s) 64, 68, 298
BslFI GGGAC 2 cut(s) 314, 340
BslI CCNNNNNNNGG 2 cut(s) 154, 323
BsmFI GGGAC 2 cut(s) 314, 340
BsnI GGCC 3 cut(s) 67, 297, 350
Bsp143I GATC 3 cut(s) 130, 205, 268
BspANI GGCC 3 cut(s) 67, 297, 350
BspCNI CTCAG 1 cut(s) 235
BspDI ATCGAT 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 328
BspPI GGATC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 2 cut(s) 124, 298
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 322, 323
BssMI GATC 3 cut(s) 130, 205, 268
Bst2UI CCWGG 4 cut(s) 149, 180, 210, 324
BstAPI GCANNNNNTGC 1 cut(s) 239
BstBAI YACGTR 1 cut(s) 382
BstC8I GCNNGC 3 cut(s) 69, 73, 235
BstDEI CTNAG 1 cut(s) 243
BstKTI GATC 3 cut(s) 133, 208, 271
BstMBI GATC 3 cut(s) 130, 205, 268
BstMCI CGRYCG 1 cut(s) 68
BstMWI GCNNNNNNNGC 2 cut(s) 32, 239
BstNI CCWGG 4 cut(s) 149, 180, 210, 324
BstNSI RCATGY 2 cut(s) 261, 357
BstSCI CCNGG 5 cut(s) 147, 178, 208, 297, 322
BstV1I GCAGC 1 cut(s) 13
BstV2I GAAGAC 1 cut(s) 120
BstZI CGGCCG 1 cut(s) 65
Bsu15I ATCGAT 1 cut(s) 267
BsuRI GGCC 3 cut(s) 67, 297, 350
BsuTUI ATCGAT 1 cut(s) 267
BtsI GCAGTG 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 117, 244
Cac8I GCNNGC 3 cut(s) 69, 73, 235
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 2 cut(s) 327, 348
ClaI ATCGAT 1 cut(s) 267
Csp6I GTAC 1 cut(s) 202
CviAII CATG 4 cut(s) 76, 258, 354, 370
CviJI RGCY 7 cut(s) 50, 67, 123, 152, 158, 297, 350
CviKI_1 RGCY 7 cut(s) 50, 67, 123, 152, 158, 297, 350
CviQI GTAC 1 cut(s) 202
DdeI CTNAG 1 cut(s) 243
DpnI GATC 3 cut(s) 132, 207, 270
DpnII GATC 3 cut(s) 130, 205, 268
DrdI GACNNNNNNGTC 1 cut(s) 308
DseDI GACNNNNNNGTC 1 cut(s) 308
EaeI YGGCCR 2 cut(s) 65, 295
EagI CGGCCG 1 cut(s) 65
EclXI CGGCCG 1 cut(s) 65
Eco47I GGWCC 1 cut(s) 327
Eco52I CGGCCG 1 cut(s) 65
EcoO109I RGGNCCY 1 cut(s) 327
EcoRII CCWGG 4 cut(s) 147, 178, 208, 322
EcoT22I ATGCAT 1 cut(s) 259
FaeI CATG 4 cut(s) 79, 261, 357, 373
FaiI YATR 9 cut(s) 77, 96, 141, 217, 219, 259, 291, 355, 371
FaqI GGGAC 2 cut(s) 314, 340
FatI CATG 4 cut(s) 75, 257, 353, 369
FbaI TGATCA 1 cut(s) 130
Fnu4HI GCNGC 1 cut(s) 27
Fsp4HI GCNGC 1 cut(s) 27
GluI GCNGC 1 cut(s) 27
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 3 cut(s) 67, 297, 350
HapII CCGG 3 cut(s) 64, 68, 298
Hin1II CATG 4 cut(s) 79, 261, 357, 373
HpaII CCGG 3 cut(s) 64, 68, 298
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 391
Hpy188I TCNGA 1 cut(s) 110
Hpy8I GTNNAC 1 cut(s) 391
HpyCH4IV ACGT 3 cut(s) 136, 222, 381
HpyCH4V TGCA 4 cut(s) 29, 233, 257, 357
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 239
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 3 cut(s) 136, 222, 381
Hsp92II CATG 4 cut(s) 79, 261, 357, 373
KroI GCCGGC 1 cut(s) 67
KroNI GCCGGC 1 cut(s) 69
Ksp22I TGATCA 1 cut(s) 130
Kzo9I GATC 3 cut(s) 130, 205, 268
Lsp1109I GCAGC 1 cut(s) 13
LweI GCATC 1 cut(s) 244
MaeII ACGT 3 cut(s) 136, 222, 381
MalI GATC 3 cut(s) 132, 207, 270
MboI GATC 3 cut(s) 130, 205, 268
MboII GAAGA 1 cut(s) 125
MmeI TCCRAC 1 cut(s) 88
Mph1103I ATGCAT 1 cut(s) 259
MroNI GCCGGC 1 cut(s) 67
MslI CAYNNNNRTG 1 cut(s) 80
MspI CCGG 3 cut(s) 64, 68, 298
MspR9I CCNGG 5 cut(s) 149, 180, 210, 299, 324
MvaI CCWGG 4 cut(s) 149, 180, 210, 324
MwoI GCNNNNNNNGC 2 cut(s) 32, 239
NaeI GCCGGC 1 cut(s) 69
NciI CCSGG 1 cut(s) 299
NdeII GATC 3 cut(s) 130, 205, 268
NgoMIV GCCGGC 1 cut(s) 67
NlaIII CATG 4 cut(s) 79, 261, 357, 373
NlaIV GGNNCC 1 cut(s) 328
NsiI ATGCAT 1 cut(s) 259
NspI RCATGY 2 cut(s) 261, 357
PasI CCCWGGG 1 cut(s) 323
PdiI GCCGGC 1 cut(s) 69
PflMI CCANNNNNTGG 1 cut(s) 323
PfoI TCCNGGA 1 cut(s) 178
PkrI GCNGC 1 cut(s) 28
Ppu21I YACGTR 1 cut(s) 382
PpuMI RGGWCCY 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 136
Psp5II RGGWCCY 1 cut(s) 327
Psp6I CCWGG 4 cut(s) 147, 178, 208, 322
PspGI CCWGG 4 cut(s) 147, 178, 208, 322
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 2 cut(s) 327, 348
PspPPI RGGWCCY 1 cut(s) 327
RsaI GTAC 1 cut(s) 203
RsaNI GTAC 1 cut(s) 202
RseI CAYNNNNRTG 1 cut(s) 80
SatI GCNGC 1 cut(s) 27
Sau3AI GATC 3 cut(s) 130, 205, 268
Sau96I GGNCC 2 cut(s) 327, 348
ScrFI CCNGG 5 cut(s) 149, 180, 210, 299, 324
SetI ASST 6 cut(s) 52, 139, 214, 225, 332, 384
SfaNI GCATC 1 cut(s) 244
SinI GGWCC 1 cut(s) 327
SmiMI CAYNNNNRTG 1 cut(s) 80
SspI AATATT 1 cut(s) 19
StyD4I CCNGG 5 cut(s) 147, 178, 208, 297, 322
TaiI ACGT 3 cut(s) 139, 225, 384
TaqI TCGA 1 cut(s) 267
TscAI CASTG 2 cut(s) 124, 244
TseI GCWGC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 386
TspRI CASTG 2 cut(s) 124, 244
Van91I CCANNNNNTGG 1 cut(s) 323
VpaK11BI GGWCC 1 cut(s) 327
XceI RCATGY 2 cut(s) 261, 357
Zsp2I ATGCAT 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.