Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006950

Physical Location & Seq

Genomic Coordinates Forward (+)

16338770 .. 16339558

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g19950.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTACATGGAGACTCCTAAGTTCAGTTTGGTAGTGATAGTGGCGATGGTGCTTGTGTTCACCTTTTTCCCTCCAAAGACCTTCGCCGTGAATTATGAAGTTGCCTCAGCCGCGGCTGAGAAGCCCGATTCTGATATTGAAGTAGCCTCAGCCGCGGCTGAGCTTGAACATGAAGATTATTATGATAACATTATGGTGAAAAATGGAAGCATCGTTAGTACTGGGTTGATACGTCGGAAGGTCGATGGTTGTACAACGTCGGTATGCAATACGATGATCATCCCTTGCCAGATGGGTTGTATTTGCGTTCCCCTCGGAATGCTTCCTATTGGACTCTGCATTGGTCTCTGTCATAGTTGCAACTTTACTCCACCTAGTCCTGCTCCAGGTCCAAAGCCACGGCCACCATTCCCTCCACAGTTATTCTCACCTTTACCGTCACCTTCAGACCATCACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

154

Amino Acids

16.52

Weight (kDa)

5.63

Isoelectric Point (pI)

56.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g19910 FvH4_7g19930 FvH4_7g19950
prunus_persica	Prupe.2G216100_v2.0.a1 Prupe.2G216200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363911 RchiOBHm_Chr1g0363921 RchiOBHm_Chr7g0226451
rosa_laevigata	RLG00000027535 RLG00000027536 RLG00000027537
rosa_multiflora	Rmu_sc0001695.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004040 Rroxscaffold_4G00292840 Rroxscaffold_4G00292860 Rroxscaffold_4G00292870
rosa_rugosa	Rorug01G0310900 Rorug01G0311000 Rorug01G0311100
rosa_samantha	Rh1AG318900 Rh1AG319100 Rh1BG282000 Rh1BG282100 Rh1CG298500 Rh1DG313400 Rh1DG313500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	113, 155
AciI	CCGC	4 cut(s)	111, 113, 153, 155
AcoI	YGGCCR	1 cut(s)	401
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	3 cut(s)	5, 220, 253
AfiI	CCNNNNNNNGG	1 cut(s)	386
AgsI	TTSAA	2 cut(s)	140, 167
AjnI	CCWGG	1 cut(s)	385
AluBI	AGCT	1 cut(s)	163
AluI	AGCT	1 cut(s)	163
Alw26I	GTCTC	2 cut(s)	5, 350
AoxI	GGCC	1 cut(s)	401
AspS9I	GGNCC	1 cut(s)	389
AsuHPI	GGTGA	5 cut(s)	52, 208, 420, 432, 446
AvaII	GGWCC	1 cut(s)	389
BbvCI	CCTCAGC	2 cut(s)	106, 148
BccI	CCATC	4 cut(s)	40, 239, 286, 459
BceAI	ACGGC	2 cut(s)	71, 416
BciT130I	CCWGG	1 cut(s)	387
BclI	TGATCA	1 cut(s)	276
BcoDI	GTCTC	2 cut(s)	5, 350
BfaI	CTAG	1 cut(s)	375
BisI	GCNGC	4 cut(s)	111, 114, 153, 156
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	4 cut(s)	112, 115, 154, 157
BmcAI	AGTACT	1 cut(s)	220
Bme1390I	CCNGG	1 cut(s)	387
Bme18I	GGWCC	1 cut(s)	389
BmgT120I	GGNCC	1 cut(s)	389
BmrFI	CCNGG	1 cut(s)	387
BmrI	ACTGGG	1 cut(s)	231
BmsI	GCATC	1 cut(s)	219
BmuI	ACTGGG	1 cut(s)	231
BpmI	CTGGAG	1 cut(s)	369
Bpu10I	CCTNAGC	2 cut(s)	106, 148
Bpu1102I	GCTNAGC	1 cut(s)	159
BsaBI	GATNNNNATC	1 cut(s)	278
BsaI	GGTCTC	1 cut(s)	350
BsaJI	CCNNGG	4 cut(s)	111, 153, 313, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	386
Bse1I	ACTGG	1 cut(s)	226
Bse8I	GATNNNNATC	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	387
BseDI	CCNNGG	4 cut(s)	111, 153, 313, 398
BseGI	GGATG	1 cut(s)	279
BseJI	GATNNNNATC	1 cut(s)	278
BseLI	CCNNNNNNNGG	1 cut(s)	386
BseMII	CTCAG	4 cut(s)	108, 120, 150, 162
BseNI	ACTGG	1 cut(s)	226
Bsh1236I	CGCG	2 cut(s)	113, 155
BshFI	GGCC	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	386
BsmAI	GTCTC	2 cut(s)	5, 350
BsmI	GAATGC	1 cut(s)	324
BsnI	GGCC	1 cut(s)	403
Bso31I	GGTCTC	1 cut(s)	350
Bsp1407I	TGTACA	2 cut(s)	3, 251
Bsp143I	GATC	1 cut(s)	276
Bsp1720I	GCTNAGC	1 cut(s)	159
BspACI	CCGC	4 cut(s)	111, 113, 153, 155
BspANI	GGCC	1 cut(s)	403
BspCNI	CTCAG	4 cut(s)	109, 119, 151, 161
BspFNI	CGCG	2 cut(s)	113, 155
BspTNI	GGTCTC	1 cut(s)	350
BsrGI	TGTACA	2 cut(s)	3, 251
BsrI	ACTGG	1 cut(s)	226
BssECI	CCNNGG	4 cut(s)	111, 153, 313, 398
BssMI	GATC	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	387
Bst4CI	ACNGT	2 cut(s)	420, 438
BstAUI	TGTACA	2 cut(s)	3, 251
BstDEI	CTNAG	5 cut(s)	18, 106, 117, 148, 159
BstDSI	CCRYGG	3 cut(s)	111, 153, 398
BstENI	CCTNNNNNAGG	1 cut(s)	384
BstF5I	GGATG	1 cut(s)	279
BstFNI	CGCG	2 cut(s)	113, 155
BstKTI	GATC	1 cut(s)	279
BstMAI	GTCTC	2 cut(s)	5, 350
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	2 cut(s)	110, 152
BstNI	CCWGG	1 cut(s)	387
BstSCI	CCNGG	1 cut(s)	385
BstUI	CGCG	2 cut(s)	113, 155
BsuRI	GGCC	1 cut(s)	403
BtgI	CCRYGG	3 cut(s)	111, 153, 398
BtgZI	GCGATG	1 cut(s)	59
BtsCI	GGATG	1 cut(s)	279
Cfr13I	GGNCC	1 cut(s)	389
Cfr42I	CCGCGG	2 cut(s)	114, 156
Csp6I	GTAC	3 cut(s)	4, 219, 252
CviAII	CATG	2 cut(s)	7, 170
CviJI	RGCY	9 cut(s)	110, 116, 124, 146, 152, 158, 163, 397, 403
CviKI_1	RGCY	9 cut(s)	110, 116, 124, 146, 152, 158, 163, 397, 403
CviQI	GTAC	3 cut(s)	4, 219, 252
DdeI	CTNAG	5 cut(s)	18, 106, 117, 148, 159
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
EaeI	YGGCCR	1 cut(s)	401
Eco31I	GGTCTC	1 cut(s)	350
Eco47I	GGWCC	1 cut(s)	389
Eco57I	CTGAAG	1 cut(s)	429
EcoNI	CCTNNNNNAGG	1 cut(s)	384
EcoRII	CCWGG	1 cut(s)	385
FaeI	CATG	2 cut(s)	10, 173
FaiI	YATR	7 cut(s)	8, 96, 171, 183, 194, 265, 354
FatI	CATG	2 cut(s)	6, 169
FbaI	TGATCA	1 cut(s)	276
Fnu4HI	GCNGC	4 cut(s)	111, 114, 153, 156
FokI	GGATG	1 cut(s)	266
Fsp4HI	GCNGC	4 cut(s)	111, 114, 153, 156
FspBI	CTAG	1 cut(s)	375
GluI	GCNGC	4 cut(s)	111, 114, 153, 156
GsuI	CTGGAG	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	403
Hin1II	CATG	2 cut(s)	10, 173
HinfI	GANTC	3 cut(s)	13, 128, 333
HphI	GGTGA	5 cut(s)	52, 208, 420, 432, 446
Hpy166II	GTNNAC	1 cut(s)	60
Hpy188I	TCNGA	4 cut(s)	133, 237, 317, 448
Hpy8I	GTNNAC	1 cut(s)	60
Hpy99I	CGWCG	2 cut(s)	237, 262
HpyAV	CCTTC	3 cut(s)	91, 232, 453
HpyCH4III	ACNGT	2 cut(s)	420, 438
HpyCH4IV	ACGT	2 cut(s)	232, 257
HpyCH4V	TGCA	3 cut(s)	267, 339, 360
HpyF10VI	GCNNNNNNNGC	2 cut(s)	110, 152
HpyF3I	CTNAG	5 cut(s)	18, 106, 117, 148, 159
HpySE526I	ACGT	2 cut(s)	232, 257
Hsp92II	CATG	2 cut(s)	10, 173
Ksp22I	TGATCA	1 cut(s)	276
KspI	CCGCGG	2 cut(s)	114, 156
Kzo9I	GATC	1 cut(s)	276
LmnI	GCTCC	1 cut(s)	388
LpnPI	CCDG	5 cut(s)	207, 302, 372, 393, 399
LweI	GCATC	1 cut(s)	219
MaeI	CTAG	1 cut(s)	375
MaeII	ACGT	2 cut(s)	232, 257
MaeIII	GTNAC	1 cut(s)	438
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	1 cut(s)	185
MluCI	AATT	1 cut(s)	91
MlyI	GAGTC	2 cut(s)	7, 327
MmeI	TCCRAC	1 cut(s)	215
MnlI	CCTC	5 cut(s)	81, 115, 157, 323, 423
MslI	CAYNNNNRTG	1 cut(s)	194
MspA1I	CMGCKG	2 cut(s)	113, 155
MspR9I	CCNGG	1 cut(s)	387
Mva1269I	GAATGC	1 cut(s)	324
MvaI	CCWGG	1 cut(s)	387
MvnI	CGCG	2 cut(s)	113, 155
MwoI	GCNNNNNNNGC	2 cut(s)	110, 152
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	2 cut(s)	10, 173
NmuCI	GTSAC	1 cut(s)	438
PctI	GAATGC	1 cut(s)	324
PfeI	GAWTC	1 cut(s)	128
PkrI	GCNGC	4 cut(s)	112, 115, 154, 157
PleI	GAGTC	2 cut(s)	7, 327
PpsI	GAGTC	2 cut(s)	7, 327
Psp6I	CCWGG	1 cut(s)	385
PspGI	CCWGG	1 cut(s)	385
PspPI	GGNCC	1 cut(s)	389
RsaI	GTAC	3 cut(s)	5, 220, 253
RsaNI	GTAC	3 cut(s)	4, 219, 252
RseI	CAYNNNNRTG	1 cut(s)	194
SacII	CCGCGG	2 cut(s)	114, 156
SatI	GCNGC	4 cut(s)	111, 114, 153, 156
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	1 cut(s)	389
ScaI	AGTACT	1 cut(s)	220
SchI	GAGTC	2 cut(s)	7, 327
ScrFI	CCNGG	1 cut(s)	387
SfaNI	GCATC	1 cut(s)	219
Sfr303I	CCGCGG	2 cut(s)	114, 156
SgrBI	CCGCGG	2 cut(s)	114, 156
SinI	GGWCC	1 cut(s)	389
SmiMI	CAYNNNNRTG	1 cut(s)	194
Sse9I	AATT	1 cut(s)	91
SsiI	CCGC	4 cut(s)	111, 113, 153, 155
SspMI	CTAG	1 cut(s)	375
StyD4I	CCNGG	1 cut(s)	385
TaaI	ACNGT	2 cut(s)	420, 438
TaiI	ACGT	2 cut(s)	235, 260
TaqI	TCGA	1 cut(s)	243
TasI	AATT	1 cut(s)	91
TatI	WGTACW	3 cut(s)	3, 218, 251
TauI	GCSGC	4 cut(s)	113, 116, 155, 158
TfiI	GAWTC	1 cut(s)	128
TseFI	GTSAC	1 cut(s)	438
Tsp45I	GTSAC	1 cut(s)	438
TspDTI	ATGAA	2 cut(s)	111, 186
VpaK11BI	GGWCC	1 cut(s)	389
XagI	CCTNNNNNAGG	1 cut(s)	384
XspI	CTAG	1 cut(s)	375
ZrmI	AGTACT	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.