RchiOBHm_Chr1g0363911

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0006950
Physical Location & Seq
Forward (+)
55217819 .. 55218361
543 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58862

Sequence Viewer

Length: 423 bp
ATGGAGAGTAAGAGGGTAGGTTTGGTGGCGGTGGCGGCGGCGGCAATGGTGCTCGTGTCCCCCTTTTTCAATCCAACTGCTTTCGCCGTGCGGCATAAGAATTATGATTCTAACGATGGTAACGAAGTAGCCTCGGTCGATGCTGAGCCGGGTCCTGTTGATTATTATGATAATATCATGGTAAAAGACGAAAGCAGCAGAAGTACTGGATCAAAACGTCTGAAGGTCGACGACGGTTGTCCATCGTCGGTATGCGATATGACAAAACCATGCAAGATTGGCTGTATTTGCGTTCCCTTTGTTCCGTTTCCTATTGGAACCTGCGTTGGTATCTGTTGTCAAATTAATCCACCTCCAGGTGCACCGCCTCTACCACCATCATCACCGTCACCATCGCCGTCACTGTCACCAGTGATGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

140

Amino Acids

14.69

Weight (kDa)

5.22

Isoelectric Point (pI)

70.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 329
AccI GTMKAC 1 cut(s) 228
AciI CCGC 6 cut(s) 29, 35, 38, 41, 91, 365
AclWI GGATC 1 cut(s) 217
AcuI CTGAAG 1 cut(s) 242
AfaI GTAC 1 cut(s) 205
AfiI CCNNNNNNNGG 1 cut(s) 356
AgsI TTSAA 1 cut(s) 70
AjnI CCWGG 1 cut(s) 355
Alw21I GWGCWC 2 cut(s) 54, 364
Alw44I GTGCAC 1 cut(s) 360
AlwI GGATC 1 cut(s) 217
ApaLI GTGCAC 1 cut(s) 360
ApeKI GCWGC 1 cut(s) 195
AseI ATTAAT 1 cut(s) 345
AspS9I GGNCC 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 150
AsuHPI GGTGA 3 cut(s) 375, 381, 399
AvaII GGWCC 1 cut(s) 152
BaeGI GKGCMC 1 cut(s) 364
BauI CACGAG 1 cut(s) 53
Bbv12I GWGCWC 2 cut(s) 54, 364
BbvI GCAGC 1 cut(s) 207
BccI CCATC 4 cut(s) 110, 250, 385, 400
BceAI ACGGC 2 cut(s) 71, 382
BciT130I CCWGG 1 cut(s) 357
BcnI CCSGG 1 cut(s) 150
BfuAI ACCTGC 1 cut(s) 329
BisI GCNGC 5 cut(s) 36, 39, 42, 92, 196
BlpI GCTNAGC 1 cut(s) 144
BlsI GCNGC 5 cut(s) 37, 40, 43, 93, 197
BmcAI AGTACT 1 cut(s) 205
Bme1390I CCNGG 2 cut(s) 150, 357
Bme18I GGWCC 1 cut(s) 152
BmgT120I GGNCC 1 cut(s) 152
BmiI GGNNCC 2 cut(s) 153, 319
BmrFI CCNGG 2 cut(s) 150, 357
BmsI GCATC 1 cut(s) 130
BoxI GACNNNNGTC 1 cut(s) 237
BpmI CTGGAG 1 cut(s) 339
Bpu1102I GCTNAGC 1 cut(s) 144
BpuMI CCSGG 1 cut(s) 150
BsaJI CCNNGG 1 cut(s) 132
Bsc4I CCNNNNNNNGG 1 cut(s) 356
Bse1I ACTGG 2 cut(s) 211, 410
Bse3DI GCAATG 1 cut(s) 51
BseBI CCWGG 1 cut(s) 357
BseDI CCNNGG 1 cut(s) 132
BseLI CCNNNNNNNGG 1 cut(s) 356
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 135
BseNI ACTGG 2 cut(s) 211, 410
BseSI GKGCMC 1 cut(s) 364
BseXI GCAGC 1 cut(s) 207
Bsh1285I CGRYCG 1 cut(s) 138
BsiEI CGRYCG 1 cut(s) 138
BsiHKAI GWGCWC 2 cut(s) 54, 364
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 43
BslI CCNNNNNNNGG 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 43
Bsp1286I GDGCHC 2 cut(s) 54, 364
Bsp143I GATC 1 cut(s) 209
Bsp1720I GCTNAGC 1 cut(s) 144
BspACI CCGC 6 cut(s) 29, 35, 38, 41, 91, 365
BspCNI CTCAG 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 153, 319
BspMI ACCTGC 1 cut(s) 329
BspPI GGATC 1 cut(s) 217
BsrDI GCAATG 1 cut(s) 51
BsrI ACTGG 2 cut(s) 211, 410
BssECI CCNNGG 1 cut(s) 132
BssMI GATC 1 cut(s) 209
BssSI CACGAG 1 cut(s) 53
Bst2BI CACGAG 1 cut(s) 53
Bst2UI CCWGG 1 cut(s) 357
Bst4CI ACNGT 3 cut(s) 236, 387, 405
BstDEI CTNAG 1 cut(s) 144
BstKTI GATC 1 cut(s) 212
BstMBI GATC 1 cut(s) 209
BstMCI CGRYCG 1 cut(s) 138
BstMWI GCNNNNNNNGC 4 cut(s) 35, 41, 279, 288
BstNI CCWGG 1 cut(s) 357
BstPAI GACNNNNGTC 1 cut(s) 237
BstSCI CCNGG 2 cut(s) 148, 355
BstSLI GKGCMC 1 cut(s) 364
BstV1I GCAGC 1 cut(s) 207
BtgZI GCGATG 1 cut(s) 378
BtsIMutI CAGTG 2 cut(s) 401, 417
BveI ACCTGC 1 cut(s) 329
Cfr13I GGNCC 1 cut(s) 152
Csp6I GTAC 1 cut(s) 204
CviAII CATG 2 cut(s) 178, 270
CviJI RGCY 3 cut(s) 131, 148, 282
CviKI_1 RGCY 3 cut(s) 131, 148, 282
CviQI GTAC 1 cut(s) 204
DdeI CTNAG 1 cut(s) 144
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
Eco47I GGWCC 1 cut(s) 152
Eco57I CTGAAG 1 cut(s) 242
EcoO109I RGGNCCY 1 cut(s) 152
EcoRII CCWGG 1 cut(s) 355
FaeI CATG 2 cut(s) 181, 273
FaiI YATR 7 cut(s) 96, 105, 168, 179, 253, 260, 271
FaqI GGGAC 1 cut(s) 43
FatI CATG 2 cut(s) 177, 269
FblI GTMKAC 1 cut(s) 228
Fnu4HI GCNGC 5 cut(s) 36, 39, 42, 92, 196
Fsp4HI GCNGC 5 cut(s) 36, 39, 42, 92, 196
GluI GCNGC 5 cut(s) 36, 39, 42, 92, 196
GsuI CTGGAG 1 cut(s) 339
HapII CCGG 1 cut(s) 149
Hin1II CATG 2 cut(s) 181, 273
HincII GTYRAC 1 cut(s) 229
HindII GTYRAC 1 cut(s) 229
HinfI GANTC 1 cut(s) 107
HpaII CCGG 1 cut(s) 149
HphI GGTGA 3 cut(s) 375, 381, 399
Hpy166II GTNNAC 2 cut(s) 229, 362
Hpy188I TCNGA 1 cut(s) 222
Hpy8I GTNNAC 2 cut(s) 229, 362
Hpy99I CGWCG 3 cut(s) 233, 236, 250
HpyAV CCTTC 1 cut(s) 217
HpyCH4III ACNGT 3 cut(s) 236, 387, 405
HpyCH4IV ACGT 1 cut(s) 217
HpyCH4V TGCA 2 cut(s) 273, 362
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 41, 279, 288
HpyF3I CTNAG 1 cut(s) 144
HpySE526I ACGT 1 cut(s) 217
Hsp92II CATG 2 cut(s) 181, 273
Kzo9I GATC 1 cut(s) 209
LpnPI CCDG 6 cut(s) 162, 168, 192, 334, 342, 369
Lsp1109I GCAGC 1 cut(s) 207
LweI GCATC 1 cut(s) 130
MaeII ACGT 1 cut(s) 217
MaeIII GTNAC 4 cut(s) 119, 387, 399, 405
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MhlI GDGCHC 2 cut(s) 54, 364
MluCI AATT 2 cut(s) 100, 342
MmeI TCCRAC 1 cut(s) 98
MnlI CCTC 4 cut(s) 6, 142, 363, 378
MseI TTAA 2 cut(s) 345, 421
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 2 cut(s) 150, 357
MvaI CCWGG 1 cut(s) 357
MwoI GCNNNNNNNGC 4 cut(s) 35, 41, 279, 288
NciI CCSGG 1 cut(s) 150
NdeII GATC 1 cut(s) 209
NlaIII CATG 2 cut(s) 181, 273
NlaIV GGNNCC 2 cut(s) 153, 319
NmuCI GTSAC 3 cut(s) 387, 399, 405
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 1 cut(s) 107
PkrI GCNGC 5 cut(s) 37, 40, 43, 93, 197
PpuMI RGGWCCY 1 cut(s) 152
PshAI GACNNNNGTC 1 cut(s) 237
PshBI ATTAAT 1 cut(s) 345
Psp5II RGGWCCY 1 cut(s) 152
Psp6I CCWGG 1 cut(s) 355
PspGI CCWGG 1 cut(s) 355
PspN4I GGNNCC 2 cut(s) 153, 319
PspPI GGNCC 1 cut(s) 152
PspPPI RGGWCCY 1 cut(s) 152
RsaI GTAC 1 cut(s) 205
RsaNI GTAC 1 cut(s) 204
SalI GTCGAC 1 cut(s) 227
SaqAI TTAA 2 cut(s) 345, 421
SatI GCNGC 5 cut(s) 36, 39, 42, 92, 196
Sau3AI GATC 1 cut(s) 209
Sau96I GGNCC 1 cut(s) 152
ScaI AGTACT 1 cut(s) 205
ScrFI CCNGG 2 cut(s) 150, 357
SduI GDGCHC 2 cut(s) 54, 364
SetI ASST 6 cut(s) 22, 220, 228, 323, 355, 361
SfaNI GCATC 1 cut(s) 130
SinI GGWCC 1 cut(s) 152
Sse9I AATT 2 cut(s) 100, 342
SsiI CCGC 6 cut(s) 29, 35, 38, 41, 91, 365
StyD4I CCNGG 2 cut(s) 148, 355
TaaI ACNGT 3 cut(s) 236, 387, 405
TaiI ACGT 1 cut(s) 220
TaqI TCGA 2 cut(s) 138, 228
TaqII GACCGA 1 cut(s) 124
TasI AATT 2 cut(s) 100, 342
TatI WGTACW 1 cut(s) 203
TauI GCSGC 4 cut(s) 38, 41, 44, 94
TfiI GAWTC 1 cut(s) 107
Tru1I TTAA 2 cut(s) 345, 421
Tru9I TTAA 2 cut(s) 345, 421
TscAI CASTG 2 cut(s) 408, 417
TseFI GTSAC 3 cut(s) 387, 399, 405
TseI GCWGC 1 cut(s) 195
Tsp45I GTSAC 3 cut(s) 387, 399, 405
TspGWI ACGGA 1 cut(s) 294
TspRI CASTG 2 cut(s) 408, 417
VneI GTGCAC 1 cut(s) 360
VpaK11BI GGWCC 1 cut(s) 152
VspI ATTAAT 1 cut(s) 345
XmiI GTMKAC 1 cut(s) 228
ZrmI AGTACT 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.