Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006950

Physical Location & Seq

Genomic Coordinates Forward (+)

55339344 .. 55339844

Gene Structure 501 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG319100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGTCTAATAAGTTCAGTCTGGTGGCAACGGTGGTTGTGCTCACCTTTTTCACTCCAACTGCCTTCGCCGTGTGGCATACAAATTATGAAGTAGCCTCTGCAGCTGCAGAGCCTGCAGAATCTGACGATCATAGTGGAGTAGCCTTGGCCGCGGCTGAGCCTGACCTTGACGAGAGTATTGAAGTAGCCTCCGCCGCTGCTGAGCCTGCGGATCCTGTGGATTATTATGATAATATTATGGTAAAAAACGAAAGCATCATTAGTACTGGGTTAATACGTCGGAAGGTCGATGGTTGTACAACTTCGATATGCAATATGATGTTCAGCCCTTGCAAGATGGGTTGTATTTGCGTTCCTTTTGGAACGCTTCCTATTGGGCTCTGCATTGGTCTCTGTCATTGCAATTTTACTCCACCTCCAGGTCCACAGCCACAGCCGCCTTCAGTCACACTATCACCGTCACCATCACCGTCACGTACCACTGATGTTTTAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

166

Amino Acids

17.47

Weight (kDa)

4.36

Isoelectric Point (pI)

61.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g19910 FvH4_7g19930 FvH4_7g19950
prunus_persica	Prupe.2G216100_v2.0.a1 Prupe.2G216200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363911 RchiOBHm_Chr1g0363921 RchiOBHm_Chr7g0226451
rosa_laevigata	RLG00000027535 RLG00000027536 RLG00000027537
rosa_multiflora	Rmu_sc0001695.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004040 Rroxscaffold_4G00292840 Rroxscaffold_4G00292860 Rroxscaffold_4G00292870
rosa_rugosa	Rorug01G0310900 Rorug01G0311000 Rorug01G0311100
rosa_samantha	Rh1AG318900 Rh1AG319100 Rh1BG282000 Rh1BG282100 Rh1CG298500 Rh1DG313400 Rh1DG313500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	155
AciI	CCGC	6 cut(s)	153, 155, 195, 198, 212, 440
AclWI	GGATC	2 cut(s)	209, 222
AcoI	YGGCCR	1 cut(s)	150
AcuI	CTGAAG	1 cut(s)	429
AfaI	GTAC	3 cut(s)	268, 301, 481
AfiI	CCNNNNNNNGG	1 cut(s)	422
AgsI	TTSAA	1 cut(s)	185
AjnI	CCWGG	1 cut(s)	421
AluBI	AGCT	1 cut(s)	107
AluI	AGCT	1 cut(s)	107
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	1 cut(s)	398
AlwI	GGATC	2 cut(s)	209, 222
AlwNI	CAGNNNCTG	2 cut(s)	116, 125
AoxI	GGCC	1 cut(s)	150
ApeKI	GCWGC	3 cut(s)	104, 107, 200
AspS9I	GGNCC	1 cut(s)	425
AsuHPI	GGTGA	4 cut(s)	37, 450, 456, 462
AvaII	GGWCC	1 cut(s)	425
BamHI	GGATCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	384
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	94, 116, 187
BccI	CCATC	3 cut(s)	287, 334, 475
BceAI	ACGGC	1 cut(s)	56
BciT130I	CCWGG	1 cut(s)	423
BcoDI	GTCTC	1 cut(s)	398
BfmI	CTRYAG	3 cut(s)	102, 108, 117
BisI	GCNGC	7 cut(s)	105, 108, 153, 156, 198, 201, 440
BlpI	GCTNAGC	2 cut(s)	159, 204
BlsI	GCNGC	7 cut(s)	106, 109, 154, 157, 199, 202, 441
BmcAI	AGTACT	1 cut(s)	268
Bme1390I	CCNGG	1 cut(s)	423
Bme18I	GGWCC	1 cut(s)	425
BmgT120I	GGNCC	1 cut(s)	425
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	423
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	267
BmuI	ACTGGG	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	405
Bpu1102I	GCTNAGC	2 cut(s)	159, 204
BsaAI	YACGTR	1 cut(s)	479
BsaI	GGTCTC	1 cut(s)	398
BsaJI	CCNNGG	2 cut(s)	147, 153
BsaXI	ACNNNNNCTCC	2 cut(s)	403, 433
Bsc4I	CCNNNNNNNGG	1 cut(s)	422
Bse1I	ACTGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	400
BseBI	CCWGG	1 cut(s)	423
BseDI	CCNNGG	2 cut(s)	147, 153
BseLI	CCNNNNNNNGG	1 cut(s)	422
BseMI	GCAATG	1 cut(s)	400
BseMII	CTCAG	2 cut(s)	150, 195
BseNI	ACTGG	1 cut(s)	274
BseXI	GCAGC	3 cut(s)	94, 116, 187
Bsh1236I	CGCG	1 cut(s)	155
BshFI	GGCC	1 cut(s)	152
BsiHKAI	GWGCWC	1 cut(s)	45
BslI	CCNNNNNNNGG	1 cut(s)	422
BsmAI	GTCTC	1 cut(s)	398
BsnI	GGCC	1 cut(s)	152
Bso31I	GGTCTC	1 cut(s)	398
Bsp1286I	GDGCHC	2 cut(s)	45, 384
Bsp1407I	TGTACA	1 cut(s)	299
Bsp143I	GATC	2 cut(s)	130, 214
Bsp1720I	GCTNAGC	2 cut(s)	159, 204
BspACI	CCGC	6 cut(s)	153, 155, 195, 198, 212, 440
BspANI	GGCC	1 cut(s)	152
BspCNI	CTCAG	2 cut(s)	151, 196
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	216
BspMAI	CTGCAG	3 cut(s)	106, 112, 121
BspPI	GGATC	2 cut(s)	209, 222
BspTNI	GGTCTC	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	400
BsrGI	TGTACA	1 cut(s)	299
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	2 cut(s)	147, 153
BssMI	GATC	2 cut(s)	130, 214
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	423
Bst4CI	ACNGT	3 cut(s)	34, 462, 474
BstAPI	GCANNNNNTGC	1 cut(s)	116
BstAUI	TGTACA	1 cut(s)	299
BstBAI	YACGTR	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	117, 210
BstDEI	CTNAG	2 cut(s)	159, 204
BstDSI	CCRYGG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	133, 217
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	2 cut(s)	130, 214
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 116, 152, 197, 209, 439
BstNI	CCWGG	1 cut(s)	423
BstSCI	CCNGG	1 cut(s)	421
BstSFI	CTRYAG	3 cut(s)	102, 108, 117
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	3 cut(s)	94, 116, 187
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BsuRI	GGCC	1 cut(s)	152
BtgI	CCRYGG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	483
Cac8I	GCNNGC	2 cut(s)	117, 210
CaiI	CAGNNNCTG	2 cut(s)	116, 125
Cfr13I	GGNCC	1 cut(s)	425
Cfr42I	CCGCGG	1 cut(s)	156
Csp6I	GTAC	3 cut(s)	267, 300, 480
CviQI	GTAC	3 cut(s)	267, 300, 480
DdeI	CTNAG	2 cut(s)	159, 204
DpnI	GATC	2 cut(s)	132, 216
DpnII	GATC	2 cut(s)	130, 214
EaeI	YGGCCR	1 cut(s)	150
EciI	GGCGGA	1 cut(s)	184
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	384
Eco31I	GGTCTC	1 cut(s)	398
Eco47I	GGWCC	1 cut(s)	425
Eco57I	CTGAAG	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	421
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	384
ErhI	CCWWGG	1 cut(s)	147
FaiI	YATR	8 cut(s)	81, 90, 135, 231, 242, 313, 320, 499
Fnu4HI	GCNGC	7 cut(s)	105, 108, 153, 156, 198, 201, 440
FriOI	GRGCYC	1 cut(s)	384
Fsp4HI	GCNGC	7 cut(s)	105, 108, 153, 156, 198, 201, 440
GluI	GCNGC	7 cut(s)	105, 108, 153, 156, 198, 201, 440
GsuI	CTGGAG	1 cut(s)	405
HaeIII	GGCC	1 cut(s)	152
HinfI	GANTC	2 cut(s)	5, 122
HphI	GGTGA	4 cut(s)	37, 450, 456, 462
Hpy166II	GTNNAC	1 cut(s)	428
Hpy188I	TCNGA	2 cut(s)	127, 285
Hpy8I	GTNNAC	1 cut(s)	428
Hpy99I	CGWCG	1 cut(s)	285
HpyAV	CCTTC	3 cut(s)	76, 280, 453
HpyCH4III	ACNGT	3 cut(s)	34, 462, 474
HpyCH4IV	ACGT	2 cut(s)	280, 478
HpyCH4V	TGCA	7 cut(s)	104, 110, 119, 315, 336, 387, 405
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 116, 152, 197, 209, 439
HpyF3I	CTNAG	2 cut(s)	159, 204
HpySE526I	ACGT	2 cut(s)	280, 478
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	130, 214
LpnPI	CCDG	8 cut(s)	8, 129, 177, 222, 231, 255, 408, 435
Lsp1109I	GCAGC	3 cut(s)	94, 116, 187
LweI	GCATC	1 cut(s)	267
MaeII	ACGT	2 cut(s)	280, 478
MaeIII	GTNAC	3 cut(s)	448, 462, 474
MalI	GATC	2 cut(s)	132, 216
MboI	GATC	2 cut(s)	130, 214
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	2 cut(s)	45, 384
MluCI	AATT	2 cut(s)	85, 406
MlyI	GAGTC	1 cut(s)	14
MmeI	TCCRAC	2 cut(s)	83, 263
MnlI	CCTC	3 cut(s)	109, 202, 429
MseI	TTAA	1 cut(s)	275
MspA1I	CMGCKG	3 cut(s)	107, 155, 200
MspR9I	CCNGG	1 cut(s)	423
MvaI	CCWGG	1 cut(s)	423
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	6 cut(s)	104, 116, 152, 197, 209, 439
NdeII	GATC	2 cut(s)	130, 214
NlaIV	GGNNCC	1 cut(s)	216
NmuCI	GTSAC	3 cut(s)	448, 462, 474
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	7 cut(s)	106, 109, 154, 157, 199, 202, 441
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	479
Psp6I	CCWGG	1 cut(s)	421
PspGI	CCWGG	1 cut(s)	421
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	425
PstI	CTGCAG	3 cut(s)	106, 112, 121
PstNI	CAGNNNCTG	2 cut(s)	116, 125
PsuI	RGATCY	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	107
RsaI	GTAC	3 cut(s)	268, 301, 481
RsaNI	GTAC	3 cut(s)	267, 300, 480
SacII	CCGCGG	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	7 cut(s)	105, 108, 153, 156, 198, 201, 440
Sau3AI	GATC	2 cut(s)	130, 214
Sau96I	GGNCC	1 cut(s)	425
ScaI	AGTACT	1 cut(s)	268
SchI	GAGTC	1 cut(s)	14
ScrFI	CCNGG	1 cut(s)	423
SduI	GDGCHC	2 cut(s)	45, 384
SetI	ASST	8 cut(s)	50, 109, 171, 283, 291, 421, 427, 481
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	3 cut(s)	102, 108, 117
Sfr303I	CCGCGG	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	156
SinI	GGWCC	1 cut(s)	425
Sse9I	AATT	2 cut(s)	85, 406
SsiI	CCGC	6 cut(s)	153, 155, 195, 198, 212, 440
SspI	AATATT	1 cut(s)	238
StyD4I	CCNGG	1 cut(s)	421
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	3 cut(s)	34, 462, 474
TaiI	ACGT	2 cut(s)	283, 481
TaqI	TCGA	2 cut(s)	291, 308
TasI	AATT	2 cut(s)	85, 406
TatI	WGTACW	2 cut(s)	266, 299
TauI	GCSGC	4 cut(s)	155, 158, 200, 442
TfiI	GAWTC	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	490
TseFI	GTSAC	3 cut(s)	448, 462, 474
TseI	GCWGC	3 cut(s)	104, 107, 200
Tsp45I	GTSAC	3 cut(s)	448, 462, 474
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	425
ZrmI	AGTACT	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.