Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006950

Physical Location & Seq

Genomic Coordinates Forward (+)

24666054 .. 24666702

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G216200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGAGATGATGAGCAACAAGTTATGTTTTGCTGTGGTAATGACCATGGTGCTTACGGTGTCCACCTTTGCTCCAGCTGCCTATGGAAACCCTAGCAAGAACAATATTGCTGAAGCACCCGCCTCTAAGCCTGACGCCAAATGTGATGCAAAAATAATCGATGCCAATAATCTCTACGATGGAAATTTTGGGGTAGCTGCTCCCATGGCTAGTCGTCTCAACGAGGAGAGCTTGGCGTTGATGTCAGGGAGGATGAAACAGCCAGAAACGAGTGGAGGTGTGGGCACCATCAATGGGTGCAGAGGCAACCTCTGCAATTTTTTGGTGGCTCCTTGCCAGATCGGCTGTGTTTGCGTTCCCATTAACATTGGACCTTATGGGTTCTGCAGTGGCGTCTGTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

135

Amino Acids

13.95

Weight (kDa)

6.14

Isoelectric Point (pI)

37.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g19910 FvH4_7g19930 FvH4_7g19950
prunus_persica	Prupe.2G216100_v2.0.a1 Prupe.2G216200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363911 RchiOBHm_Chr1g0363921 RchiOBHm_Chr7g0226451
rosa_laevigata	RLG00000027535 RLG00000027536 RLG00000027537
rosa_multiflora	Rmu_sc0001695.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004040 Rroxscaffold_4G00292840 Rroxscaffold_4G00292860 Rroxscaffold_4G00292870
rosa_rugosa	Rorug01G0310900 Rorug01G0311000 Rorug01G0311100
rosa_samantha	Rh1AG318900 Rh1AG319100 Rh1BG282000 Rh1BG282100 Rh1CG298500 Rh1DG313400 Rh1DG313500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	284
AciI	CCGC	1 cut(s)	120
AcsI	RAATTY	1 cut(s)	184
AcuI	CTGAAG	1 cut(s)	132
AcyI	GRCGYC	2 cut(s)	135, 393
AfiI	CCNNNNNNNGG	1 cut(s)	294
AluBI	AGCT	3 cut(s)	77, 197, 231
AluI	AGCT	3 cut(s)	77, 197, 231
Alw26I	GTCTC	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	77, 197
ApoI	RAATTY	1 cut(s)	184
AspS9I	GGNCC	1 cut(s)	371
AvaII	GGWCC	1 cut(s)	371
BaeGI	GKGCMC	1 cut(s)	287
BanI	GGYRCC	1 cut(s)	284
BbvI	GCAGC	2 cut(s)	64, 184
BccI	CCATC	2 cut(s)	173, 296
BcoDI	GTCTC	1 cut(s)	221
BfaI	CTAG	3 cut(s)	93, 210, 403
BfmI	CTRYAG	1 cut(s)	385
BglI	GCCNNNNNGGC	1 cut(s)	342
BisI	GCNGC	2 cut(s)	78, 198
BlsI	GCNGC	2 cut(s)	79, 199
Bme18I	GGWCC	1 cut(s)	371
BmgT120I	GGNCC	1 cut(s)	371
BmiI	GGNNCC	2 cut(s)	286, 330
BmsI	GCATC	2 cut(s)	136, 151
BplI	GAGNNNNNCTC	2 cut(s)	294, 326
BpmI	CTGGAG	1 cut(s)	57
Bsa29I	ATCGAT	1 cut(s)	159
BsaHI	GRCGYC	2 cut(s)	135, 393
BsaJI	CCNNGG	2 cut(s)	45, 204
BsaXI	ACNNNNNCTCC	2 cut(s)	55, 85
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
BseCI	ATCGAT	1 cut(s)	159
BseDI	CCNNGG	2 cut(s)	45, 204
BseGI	GGATG	1 cut(s)	258
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseRI	GAGGAG	1 cut(s)	239
BseSI	GKGCMC	1 cut(s)	287
BseXI	GCAGC	2 cut(s)	64, 184
BsgI	GTGCAG	1 cut(s)	319
BshNI	GGYRCC	1 cut(s)	284
BshVI	ATCGAT	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	221
BsmBI	CGTCTC	1 cut(s)	221
Bsp1286I	GDGCHC	1 cut(s)	287
Bsp143I	GATC	1 cut(s)	339
Bsp19I	CCATGG	2 cut(s)	45, 204
BspACI	CCGC	1 cut(s)	120
BspDI	ATCGAT	1 cut(s)	159
BspLI	GGNNCC	2 cut(s)	286, 330
BspMAI	CTGCAG	1 cut(s)	389
BspT107I	GGYRCC	1 cut(s)	284
BssECI	CCNNGG	2 cut(s)	45, 204
BssMI	GATC	1 cut(s)	339
BssNI	GRCGYC	2 cut(s)	135, 393
BssT1I	CCWWGG	2 cut(s)	45, 204
Bst4CI	ACNGT	1 cut(s)	58
BstACI	GRCGYC	2 cut(s)	135, 393
BstAPI	GCANNNNNTGC	1 cut(s)	312
BstDEI	CTNAG	1 cut(s)	126
BstDSI	CCRYGG	2 cut(s)	45, 204
BstF5I	GGATG	1 cut(s)	258
BstKTI	GATC	1 cut(s)	342
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	1 cut(s)	339
BstMWI	GCNNNNNNNGC	6 cut(s)	77, 206, 312, 342, 351, 399
BstSFI	CTRYAG	1 cut(s)	385
BstSLI	GKGCMC	1 cut(s)	287
BstV1I	GCAGC	2 cut(s)	64, 184
Bsu15I	ATCGAT	1 cut(s)	159
BsuTUI	ATCGAT	1 cut(s)	159
BtgI	CCRYGG	2 cut(s)	45, 204
BtsCI	GGATG	1 cut(s)	258
BtsI	GCAGTG	1 cut(s)	394
BtsIMutI	CAGTG	1 cut(s)	394
Cfr13I	GGNCC	1 cut(s)	371
ClaI	ATCGAT	1 cut(s)	159
CseI	GACGC	2 cut(s)	143, 382
CviAII	CATG	2 cut(s)	46, 205
CviJI	RGCY	8 cut(s)	77, 130, 197, 209, 231, 262, 329, 345
CviKI_1	RGCY	8 cut(s)	77, 130, 197, 209, 231, 262, 329, 345
DdeI	CTNAG	1 cut(s)	126
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
Eco130I	CCWWGG	2 cut(s)	45, 204
Eco47I	GGWCC	1 cut(s)	371
Eco57I	CTGAAG	1 cut(s)	132
EcoT14I	CCWWGG	2 cut(s)	45, 204
ErhI	CCWWGG	2 cut(s)	45, 204
Esp3I	CGTCTC	1 cut(s)	221
FaeI	CATG	2 cut(s)	49, 208
FaiI	YATR	5 cut(s)	25, 47, 84, 206, 378
FatI	CATG	2 cut(s)	45, 204
FauI	CCCGC	1 cut(s)	127
Fnu4HI	GCNGC	2 cut(s)	78, 198
FokI	GGATG	1 cut(s)	265
Fsp4HI	GCNGC	2 cut(s)	78, 198
FspBI	CTAG	3 cut(s)	93, 210, 403
GluI	GCNGC	2 cut(s)	78, 198
GsuI	CTGGAG	1 cut(s)	57
HgaI	GACGC	2 cut(s)	143, 382
Hin1I	GRCGYC	2 cut(s)	135, 393
Hin1II	CATG	2 cut(s)	49, 208
Hpy166II	GTNNAC	1 cut(s)	63
Hpy8I	GTNNAC	1 cut(s)	63
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	4 cut(s)	149, 300, 315, 387
HpyF10VI	GCNNNNNNNGC	6 cut(s)	77, 206, 312, 342, 351, 399
HpyF3I	CTNAG	1 cut(s)	126
Hsp92I	GRCGYC	2 cut(s)	135, 393
Hsp92II	CATG	2 cut(s)	49, 208
Kzo9I	GATC	1 cut(s)	339
LmnI	GCTCC	3 cut(s)	76, 205, 334
LpnPI	CCDG	5 cut(s)	87, 144, 231, 276, 350
Lsp1109I	GCAGC	2 cut(s)	64, 184
LweI	GCATC	2 cut(s)	136, 151
MaeI	CTAG	3 cut(s)	93, 210, 403
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MhlI	GDGCHC	1 cut(s)	287
MluCI	AATT	2 cut(s)	184, 316
MnlI	CCTC	6 cut(s)	133, 217, 243, 269, 296, 320
MseI	TTAA	1 cut(s)	363
MspA1I	CMGCKG	1 cut(s)	77
MwoI	GCNNNNNNNGC	6 cut(s)	77, 206, 312, 342, 351, 399
NcoI	CCATGG	2 cut(s)	45, 204
NdeII	GATC	1 cut(s)	339
NlaIII	CATG	2 cut(s)	49, 208
NlaIV	GGNNCC	2 cut(s)	286, 330
PkrI	GCNGC	2 cut(s)	79, 199
PspN4I	GGNNCC	2 cut(s)	286, 330
PspPI	GGNCC	1 cut(s)	371
PstI	CTGCAG	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	77
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	2 cut(s)	78, 198
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	371
SduI	GDGCHC	1 cut(s)	287
SetI	ASST	7 cut(s)	68, 79, 199, 233, 280, 312, 376
SfaNI	GCATC	2 cut(s)	136, 151
SfcI	CTRYAG	1 cut(s)	385
SinI	GGWCC	1 cut(s)	371
Sse9I	AATT	2 cut(s)	184, 316
SsiI	CCGC	1 cut(s)	120
SspI	AATATT	1 cut(s)	106
SspMI	CTAG	3 cut(s)	93, 210, 403
StyI	CCWWGG	2 cut(s)	45, 204
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	159
TasI	AATT	2 cut(s)	184, 316
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	1 cut(s)	394
TseI	GCWGC	2 cut(s)	77, 197
TspDTI	ATGAA	1 cut(s)	269
TspRI	CASTG	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	371
XapI	RAATTY	1 cut(s)	184
XspI	CTAG	3 cut(s)	93, 210, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.