FvH4_7g19930

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0006950
Physical Location & Seq
Forward (+)
16333940 .. 16334389
450 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g19930.t1

Sequence Viewer

Length: 450 bp
ATGGAGAGTAACAAGAGGGTAGGTTTGGTGGCGGTGGCGGCAGTGGTGGTTGTGTCCACCTTTTTCATGTCTACTGTTTTCGCCAGTCGGCATAGGAATTATGAAATAGTCTCGGCAGCTGTGGAGCCTGATTCTAACGATGATAATGGAGTTATTACCTCAGCCCTTGCTGAGCCTGATTTTGATGAGTATGATCATAATATTATGGTAAAAGACGAGAGGAGCAGAAGTGCTACCGGATCTAAACGACTGGAGGCCGACAAAGGTTGTCCGTCATCGGTATGGATTACGACAAACACAAACCCATGCAGGATTGGCTGCATTTGCGTCCCCTATGTTCCGTTAACTTCTACAGGCGTCTGCATTGGTATATGTTGTCAAATTGTTCCACCTCCACGTCCACCGCCGTCACCTCTGTCTCCGTCACCGCCACCACTGACGTCGTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

15.97

Weight (kDa)

5.28

Isoelectric Point (pI)

58.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 443
AccI GTMKAC 1 cut(s) 71
AciI CCGC 4 cut(s) 32, 38, 404, 428
AclWI GGATC 1 cut(s) 247
AcyI GRCGYC 2 cut(s) 357, 440
AjiI CACGTC 1 cut(s) 398
AluBI AGCT 1 cut(s) 119
AluI AGCT 1 cut(s) 119
Alw26I GTCTC 2 cut(s) 115, 423
AlwI GGATC 1 cut(s) 247
AoxI GGCC 1 cut(s) 255
ApeKI GCWGC 2 cut(s) 116, 318
AsuHPI GGTGA 2 cut(s) 402, 417
BbvCI CCTCAGC 1 cut(s) 160
BbvI GCAGC 2 cut(s) 128, 305
BceAI ACGGC 1 cut(s) 391
BclI TGATCA 1 cut(s) 193
BcoDI GTCTC 2 cut(s) 115, 423
BfmI CTRYAG 1 cut(s) 351
BisI GCNGC 3 cut(s) 39, 117, 319
BlpI GCTNAGC 1 cut(s) 171
BlsI GCNGC 3 cut(s) 40, 118, 320
BmgBI CACGTC 1 cut(s) 398
BmiI GGNNCC 1 cut(s) 126
BpmI CTGGAG 1 cut(s) 272
Bpu10I CCTNAGC 1 cut(s) 160
Bpu1102I GCTNAGC 1 cut(s) 171
BsaHI GRCGYC 2 cut(s) 357, 440
BsaWI WCCGGW 1 cut(s) 236
BsaXI ACNNNNNCTCC 2 cut(s) 214, 244
Bse1I ACTGG 2 cut(s) 84, 255
BseMII CTCAG 2 cut(s) 162, 174
BseNI ACTGG 2 cut(s) 84, 255
BseRI GAGGAG 1 cut(s) 235
BseXI GCAGC 2 cut(s) 128, 305
BshFI GGCC 1 cut(s) 257
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 1 cut(s) 314
BsmAI GTCTC 2 cut(s) 115, 423
BsmFI GGGAC 1 cut(s) 314
BsnI GGCC 1 cut(s) 257
Bsp143I GATC 2 cut(s) 193, 239
Bsp1720I GCTNAGC 1 cut(s) 171
BspACI CCGC 4 cut(s) 32, 38, 404, 428
BspANI GGCC 1 cut(s) 257
BspCNI CTCAG 2 cut(s) 163, 173
BspLI GGNNCC 1 cut(s) 126
BspPI GGATC 1 cut(s) 247
BsrI ACTGG 2 cut(s) 84, 255
BssMI GATC 2 cut(s) 193, 239
BssNI GRCGYC 2 cut(s) 357, 440
Bst4CI ACNGT 1 cut(s) 76
BstACI GRCGYC 2 cut(s) 357, 440
BstDEI CTNAG 2 cut(s) 160, 171
BstKTI GATC 2 cut(s) 196, 242
BstMAI GTCTC 2 cut(s) 115, 423
BstMBI GATC 2 cut(s) 193, 239
BstMWI GCNNNNNNNGC 3 cut(s) 38, 315, 324
BstSFI CTRYAG 1 cut(s) 351
BstV1I GCAGC 2 cut(s) 128, 305
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
BsuRI GGCC 1 cut(s) 257
BtrI CACGTC 1 cut(s) 398
BtsI GCAGTG 1 cut(s) 48
BtsIMutI CAGTG 2 cut(s) 48, 434
CseI GACGC 2 cut(s) 316, 346
CviAII CATG 2 cut(s) 67, 306
CviJI RGCY 6 cut(s) 119, 127, 164, 175, 257, 318
CviKI_1 RGCY 6 cut(s) 119, 127, 164, 175, 257, 318
DdeI CTNAG 2 cut(s) 160, 171
DpnI GATC 2 cut(s) 195, 241
DpnII GATC 2 cut(s) 193, 239
FaeI CATG 2 cut(s) 70, 309
FaqI GGGAC 1 cut(s) 314
FatI CATG 2 cut(s) 66, 305
FbaI TGATCA 1 cut(s) 193
FblI GTMKAC 1 cut(s) 71
Fnu4HI GCNGC 3 cut(s) 39, 117, 319
Fsp4HI GCNGC 3 cut(s) 39, 117, 319
GluI GCNGC 3 cut(s) 39, 117, 319
GsuI CTGGAG 1 cut(s) 272
HaeIII GGCC 1 cut(s) 257
HapII CCGG 1 cut(s) 237
HgaI GACGC 2 cut(s) 316, 346
Hin1I GRCGYC 2 cut(s) 357, 440
Hin1II CATG 2 cut(s) 70, 309
HincII GTYRAC 1 cut(s) 345
HindII GTYRAC 1 cut(s) 345
HinfI GANTC 1 cut(s) 131
HpaI GTTAAC 1 cut(s) 345
HpaII CCGG 1 cut(s) 237
HphI GGTGA 2 cut(s) 402, 417
Hpy166II GTNNAC 4 cut(s) 57, 72, 345, 401
Hpy8I GTNNAC 4 cut(s) 57, 72, 345, 401
Hpy99I CGWCG 1 cut(s) 445
HpyCH4III ACNGT 1 cut(s) 76
HpyCH4IV ACGT 2 cut(s) 397, 440
HpyCH4V TGCA 3 cut(s) 309, 321, 363
HpyF10VI GCNNNNNNNGC 3 cut(s) 38, 315, 324
HpyF3I CTNAG 2 cut(s) 160, 171
HpySE526I ACGT 2 cut(s) 397, 440
Hsp92I GRCGYC 2 cut(s) 357, 440
Hsp92II CATG 2 cut(s) 70, 309
Ksp22I TGATCA 1 cut(s) 193
KspAI GTTAAC 1 cut(s) 345
Kzo9I GATC 2 cut(s) 193, 239
LmnI GCTCC 2 cut(s) 124, 222
LpnPI CCDG 7 cut(s) 97, 141, 189, 236, 250, 295, 339
Lsp1109I GCAGC 2 cut(s) 128, 305
MaeII ACGT 2 cut(s) 397, 440
MaeIII GTNAC 3 cut(s) 8, 408, 423
MalI GATC 2 cut(s) 195, 241
MboI GATC 2 cut(s) 193, 239
MflI RGATCY 1 cut(s) 239
MluCI AATT 2 cut(s) 97, 381
MnlI CCTC 6 cut(s) 9, 169, 213, 247, 402, 423
MseI TTAA 1 cut(s) 344
MslI CAYNNNNRTG 1 cut(s) 280
MspA1I CMGCKG 1 cut(s) 119
MspI CCGG 1 cut(s) 237
MwoI GCNNNNNNNGC 3 cut(s) 38, 315, 324
NdeII GATC 2 cut(s) 193, 239
NlaIII CATG 2 cut(s) 70, 309
NlaIV GGNNCC 1 cut(s) 126
NmeAIII GCCGAG 1 cut(s) 92
NmuCI GTSAC 2 cut(s) 408, 423
PfeI GAWTC 1 cut(s) 131
PkrI GCNGC 3 cut(s) 40, 118, 320
PspN4I GGNNCC 1 cut(s) 126
PsuI RGATCY 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 119
RseI CAYNNNNRTG 1 cut(s) 280
SaqAI TTAA 1 cut(s) 344
SatI GCNGC 3 cut(s) 39, 117, 319
Sau3AI GATC 2 cut(s) 193, 239
SetI ASST 9 cut(s) 25, 62, 121, 161, 268, 394, 400, 415, 443
SfcI CTRYAG 1 cut(s) 351
SmiMI CAYNNNNRTG 1 cut(s) 280
Sse9I AATT 2 cut(s) 97, 381
SsiI CCGC 4 cut(s) 32, 38, 404, 428
SspI AATATT 1 cut(s) 202
TaaI ACNGT 1 cut(s) 76
TaiI ACGT 2 cut(s) 400, 443
TasI AATT 2 cut(s) 97, 381
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 1 cut(s) 131
Tru1I TTAA 1 cut(s) 344
Tru9I TTAA 1 cut(s) 344
TscAI CASTG 2 cut(s) 48, 441
TseFI GTSAC 2 cut(s) 408, 423
TseI GCWGC 2 cut(s) 116, 318
Tsp45I GTSAC 2 cut(s) 408, 423
TspDTI ATGAA 2 cut(s) 55, 117
TspGWI ACGGA 3 cut(s) 261, 330, 411
TspRI CASTG 2 cut(s) 48, 441
XmiI GTMKAC 1 cut(s) 71
ZraI GACGTC 1 cut(s) 441
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.