Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0006950

Physical Location & Seq

Genomic Coordinates Forward (+)

41879554 .. 41880303

Gene Structure 750 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG282000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGAGAGTAAGAGGGTAGGTTTGGTGGTGGCGGCGGCGGCAATGGTGCTCGTGTCCCCCTTTTTCAATCCAACTGCTTTCGCCGTGCGGCATAAGAATTATGAAGTAGTCTCGGCCGCTGCGGAGCCTGATTCTAACGATCGTAACGAAGTAGCCTCGGCCGATGCTGAGCCGGGTCCTGTTGATTATTATGATAATATCATGGTAAAAGACGAAAGCAGCAGAAGTACTGGATCAAAACGTCTGAAGGTCGACGACGGTTGTCCATCGTCGATATGCGATATGACAAAACCATGCAAGATTGGCTGTATTTGCGTTCCCTTTGTTCCGTTTCCTATTGGAACCTGCGTTGGTATCTGTTGTCAAATTATTAATCCACCTCCAGGTGCACCGCCTCTACCACCATCACCATCATCACGTCACCATCGCCGTCACTGTCACCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

15.88

Weight (kDa)

6.93

Isoelectric Point (pI)

64.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g19910 FvH4_7g19930 FvH4_7g19950
prunus_persica	Prupe.2G216100_v2.0.a1 Prupe.2G216200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363911 RchiOBHm_Chr1g0363921 RchiOBHm_Chr7g0226451
rosa_laevigata	RLG00000027535 RLG00000027536 RLG00000027537
rosa_multiflora	Rmu_sc0001695.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004040 Rroxscaffold_4G00292840 Rroxscaffold_4G00292860 Rroxscaffold_4G00292870
rosa_rugosa	Rorug01G0310900 Rorug01G0311000 Rorug01G0311100
rosa_samantha	Rh1AG318900 Rh1AG319100 Rh1BG282000 Rh1BG282100 Rh1CG298500 Rh1DG313400 Rh1DG313500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	252
AciI	CCGC	7 cut(s)	32, 35, 38, 88, 117, 122, 392
AclWI	GGATC	1 cut(s)	241
AcoI	YGGCCR	2 cut(s)	114, 159
AcuI	CTGAAG	1 cut(s)	266
AfaI	GTAC	1 cut(s)	229
AfiI	CCNNNNNNNGG	1 cut(s)	383
AgsI	TTSAA	1 cut(s)	67
AjiI	CACGTC	1 cut(s)	419
AjnI	CCWGG	1 cut(s)	382
Alw21I	GWGCWC	2 cut(s)	51, 391
Alw26I	GTCTC	1 cut(s)	115
Alw44I	GTGCAC	1 cut(s)	387
AlwI	GGATC	1 cut(s)	241
AoxI	GGCC	2 cut(s)	114, 159
ApaLI	GTGCAC	1 cut(s)	387
ApeKI	GCWGC	2 cut(s)	119, 219
AseI	ATTAAT	1 cut(s)	372
AspS9I	GGNCC	1 cut(s)	176
AsuC2I	CCSGG	1 cut(s)	174
AsuHPI	GGTGA	3 cut(s)	399, 413, 431
AvaII	GGWCC	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	391
BauI	CACGAG	1 cut(s)	50
Bbv12I	GWGCWC	2 cut(s)	51, 391
BbvI	GCAGC	2 cut(s)	106, 231
BccI	CCATC	4 cut(s)	274, 412, 418, 432
BceAI	ACGGC	2 cut(s)	68, 414
BciT130I	CCWGG	1 cut(s)	384
BcnI	CCSGG	1 cut(s)	174
BcoDI	GTCTC	1 cut(s)	115
BfuAI	ACCTGC	1 cut(s)	353
BisI	GCNGC	7 cut(s)	33, 36, 39, 89, 117, 120, 220
BlpI	GCTNAGC	1 cut(s)	168
BlsI	GCNGC	7 cut(s)	34, 37, 40, 90, 118, 121, 221
BmcAI	AGTACT	1 cut(s)	229
Bme1390I	CCNGG	2 cut(s)	174, 384
Bme18I	GGWCC	1 cut(s)	176
BmgBI	CACGTC	1 cut(s)	419
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	3 cut(s)	126, 177, 343
BmrFI	CCNGG	2 cut(s)	174, 384
BmsI	GCATC	1 cut(s)	154
BoxI	GACNNNNGTC	1 cut(s)	261
BpmI	CTGGAG	1 cut(s)	366
Bpu1102I	GCTNAGC	1 cut(s)	168
BpuMI	CCSGG	1 cut(s)	174
BsaJI	CCNNGG	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	1 cut(s)	383
Bse1I	ACTGG	2 cut(s)	235, 442
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	156
BseLI	CCNNNNNNNGG	1 cut(s)	383
BseMI	GCAATG	1 cut(s)	48
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	2 cut(s)	235, 442
BseSI	GKGCMC	1 cut(s)	391
BseX3I	CGGCCG	2 cut(s)	114, 159
BseXI	GCAGC	2 cut(s)	106, 231
Bsh1285I	CGRYCG	3 cut(s)	117, 142, 162
BshFI	GGCC	2 cut(s)	116, 161
BsiEI	CGRYCG	3 cut(s)	117, 142, 162
BsiHKAI	GWGCWC	2 cut(s)	51, 391
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	1 cut(s)	383
BsmAI	GTCTC	1 cut(s)	115
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	2 cut(s)	116, 161
Bsp1286I	GDGCHC	2 cut(s)	51, 391
Bsp143I	GATC	2 cut(s)	139, 233
Bsp1720I	GCTNAGC	1 cut(s)	168
BspACI	CCGC	7 cut(s)	32, 35, 38, 88, 117, 122, 392
BspANI	GGCC	2 cut(s)	116, 161
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	3 cut(s)	126, 177, 343
BspMI	ACCTGC	1 cut(s)	353
BspPI	GGATC	1 cut(s)	241
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	235, 442
BssECI	CCNNGG	1 cut(s)	156
BssMI	GATC	2 cut(s)	139, 233
BssSI	CACGAG	1 cut(s)	50
Bst2BI	CACGAG	1 cut(s)	50
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	260, 437
BstDEI	CTNAG	1 cut(s)	168
BstKTI	GATC	2 cut(s)	142, 236
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	2 cut(s)	139, 233
BstMCI	CGRYCG	3 cut(s)	117, 142, 162
BstMWI	GCNNNNNNNGC	3 cut(s)	38, 303, 312
BstNI	CCWGG	1 cut(s)	384
BstPAI	GACNNNNGTC	1 cut(s)	261
BstSCI	CCNGG	2 cut(s)	172, 382
BstSLI	GKGCMC	1 cut(s)	391
BstV1I	GCAGC	2 cut(s)	106, 231
BstZI	CGGCCG	2 cut(s)	114, 159
BsuRI	GGCC	2 cut(s)	116, 161
BtgZI	GCGATG	1 cut(s)	410
BtrI	CACGTC	1 cut(s)	419
BtsIMutI	CAGTG	1 cut(s)	433
BveI	ACCTGC	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	2 cut(s)	202, 294
CviJI	RGCY	6 cut(s)	116, 127, 155, 161, 172, 306
CviKI_1	RGCY	6 cut(s)	116, 127, 155, 161, 172, 306
CviQI	GTAC	1 cut(s)	228
DdeI	CTNAG	1 cut(s)	168
DpnI	GATC	2 cut(s)	141, 235
DpnII	GATC	2 cut(s)	139, 233
EaeI	YGGCCR	2 cut(s)	114, 159
EagI	CGGCCG	2 cut(s)	114, 159
EclXI	CGGCCG	2 cut(s)	114, 159
Eco47I	GGWCC	1 cut(s)	176
Eco52I	CGGCCG	2 cut(s)	114, 159
Eco57I	CTGAAG	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	382
FaeI	CATG	2 cut(s)	205, 297
FaiI	YATR	7 cut(s)	93, 102, 192, 203, 277, 284, 295
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	2 cut(s)	201, 293
FblI	GTMKAC	1 cut(s)	252
Fnu4HI	GCNGC	7 cut(s)	33, 36, 39, 89, 117, 120, 220
Fsp4HI	GCNGC	7 cut(s)	33, 36, 39, 89, 117, 120, 220
GluI	GCNGC	7 cut(s)	33, 36, 39, 89, 117, 120, 220
GsuI	CTGGAG	1 cut(s)	366
HaeIII	GGCC	2 cut(s)	116, 161
HapII	CCGG	1 cut(s)	173
Hin1II	CATG	2 cut(s)	205, 297
HincII	GTYRAC	1 cut(s)	253
HindII	GTYRAC	1 cut(s)	253
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	1 cut(s)	173
HphI	GGTGA	3 cut(s)	399, 413, 431
Hpy166II	GTNNAC	2 cut(s)	253, 389
Hpy188I	TCNGA	1 cut(s)	246
Hpy8I	GTNNAC	2 cut(s)	253, 389
Hpy99I	CGWCG	3 cut(s)	257, 260, 274
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	2 cut(s)	260, 437
HpyCH4IV	ACGT	2 cut(s)	241, 418
HpyCH4V	TGCA	2 cut(s)	297, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	38, 303, 312
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	2 cut(s)	241, 418
Hsp92II	CATG	2 cut(s)	205, 297
Kzo9I	GATC	2 cut(s)	139, 233
LmnI	GCTCC	1 cut(s)	124
LpnPI	CCDG	7 cut(s)	141, 186, 192, 216, 358, 369, 396
Lsp1109I	GCAGC	2 cut(s)	106, 231
LweI	GCATC	1 cut(s)	154
MaeII	ACGT	2 cut(s)	241, 418
MaeIII	GTNAC	4 cut(s)	143, 419, 431, 437
MalI	GATC	2 cut(s)	141, 235
MboI	GATC	2 cut(s)	139, 233
MhlI	GDGCHC	2 cut(s)	51, 391
MluCI	AATT	2 cut(s)	97, 366
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	4 cut(s)	6, 166, 390, 405
MseI	TTAA	1 cut(s)	372
MspA1I	CMGCKG	1 cut(s)	119
MspI	CCGG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	174, 384
MvaI	CCWGG	1 cut(s)	384
MwoI	GCNNNNNNNGC	3 cut(s)	38, 303, 312
NciI	CCSGG	1 cut(s)	174
NdeII	GATC	2 cut(s)	139, 233
NlaIII	CATG	2 cut(s)	205, 297
NlaIV	GGNNCC	3 cut(s)	126, 177, 343
NmeAIII	GCCGAG	2 cut(s)	92, 137
NmuCI	GTSAC	3 cut(s)	419, 431, 437
PcsI	WCGNNNNNNNCGW	1 cut(s)	144
PfeI	GAWTC	1 cut(s)	131
PkrI	GCNGC	7 cut(s)	34, 37, 40, 90, 118, 121, 221
Ple19I	CGATCG	1 cut(s)	142
PpuMI	RGGWCCY	1 cut(s)	176
PshAI	GACNNNNGTC	1 cut(s)	261
PshBI	ATTAAT	1 cut(s)	372
Psp5II	RGGWCCY	1 cut(s)	176
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	3 cut(s)	126, 177, 343
PspPI	GGNCC	1 cut(s)	176
PspPPI	RGGWCCY	1 cut(s)	176
PvuI	CGATCG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SalI	GTCGAC	1 cut(s)	251
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	7 cut(s)	33, 36, 39, 89, 117, 120, 220
Sau3AI	GATC	2 cut(s)	139, 233
Sau96I	GGNCC	1 cut(s)	176
ScaI	AGTACT	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	174, 384
SduI	GDGCHC	2 cut(s)	51, 391
SetI	ASST	7 cut(s)	22, 244, 252, 347, 382, 388, 421
SfaNI	GCATC	1 cut(s)	154
SinI	GGWCC	1 cut(s)	176
Sse9I	AATT	2 cut(s)	97, 366
SsiI	CCGC	7 cut(s)	32, 35, 38, 88, 117, 122, 392
StyD4I	CCNGG	2 cut(s)	172, 382
TaaI	ACNGT	2 cut(s)	260, 437
TaiI	ACGT	2 cut(s)	244, 421
TaqI	TCGA	2 cut(s)	252, 272
TasI	AATT	2 cut(s)	97, 366
TatI	WGTACW	1 cut(s)	227
TauI	GCSGC	5 cut(s)	35, 38, 41, 91, 119
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	440
TseFI	GTSAC	3 cut(s)	419, 431, 437
TseI	GCWGC	2 cut(s)	119, 219
Tsp45I	GTSAC	3 cut(s)	419, 431, 437
TspDTI	ATGAA	1 cut(s)	117
TspGWI	ACGGA	1 cut(s)	318
TspRI	CASTG	1 cut(s)	440
VneI	GTGCAC	1 cut(s)	387
VpaK11BI	GGWCC	1 cut(s)	176
VspI	ATTAAT	1 cut(s)	372
XmiI	GTMKAC	1 cut(s)	252
ZrmI	AGTACT	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.