Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006950

Physical Location & Seq

Genomic Coordinates Reverse (-)

13068848 .. 13069567

Gene Structure 720 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00292870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAACATTAAGGTAGGTTGGTTGCTGGTGGTGGCCTTGCTTGTGTCCACCTTTTTTGCTCCAACTGCATTTGCCGTGCAGCGCAAGAATAATGAAATAGCCAGATCTGCTTCTGTTGCCGATGATGATGACGATGACGATGATCCGAAAAATGGGTGTAAAGGTTCGGTATGCAATATGATCCTATTCCCTTGTCGGCCAGGCTGTGTTTGCGTCCCCATTGGAATGTTACCTATAGGTATCTGCGCTGGTATCTGTTGCGATAGTCCATCTCCAACACCACCGTCGCCGCCTACGCCACCGTCACCTCCTCCTACGCCACCTTCACCTCCTAAGCCTCCGACACCGGCACCTCCCGAGCCACCGTCACCTCCTCCAACGCCACCTGCACCTCCCAAGCCACCGACACCTCCTCCAACGCCACCTGCACCTCCCAAGCCACCAACACCTCCTCCAACGCCACCGGCACCTCCCGAGCCACCGGCACCTCCCAAGCCACCGTCACCTCCTCCCACGCCTCCACCACATCCTCCGAATGCACCACCTCATTTTCCAAATCCGGCACATCATCCTCCGACTCCGCCACGTCATCCTCCAAAGCTAGCGCCCCGTCCTCCCAAGCCACCGTCCTTGCCTCAGGCTCTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

215

Amino Acids

22.12

Weight (kDa)

8.45

Isoelectric Point (pI)

89.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g19910 FvH4_7g19930 FvH4_7g19950
prunus_persica	Prupe.2G216100_v2.0.a1 Prupe.2G216200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363911 RchiOBHm_Chr1g0363921 RchiOBHm_Chr7g0226451
rosa_laevigata	RLG00000027535 RLG00000027536 RLG00000027537
rosa_multiflora	Rmu_sc0001695.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004040 Rroxscaffold_4G00292840 Rroxscaffold_4G00292860 Rroxscaffold_4G00292870
rosa_rugosa	Rorug01G0310900 Rorug01G0311000 Rorug01G0311100
rosa_samantha	Rh1AG318900 Rh1AG319100 Rh1BG282000 Rh1BG282100 Rh1CG298500 Rh1DG313400 Rh1DG313500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	394, 433
Acc36I	ACCTGC	2 cut(s)	394, 433
AccB1I	GGYRCC	3 cut(s)	349, 466, 484
AciI	CCGC	2 cut(s)	290, 581
AclWI	GGATC	2 cut(s)	137, 175
AcoI	YGGCCR	1 cut(s)	197
AfiI	CCNNNNNNNGG	1 cut(s)	152
AjiI	CACGTC	1 cut(s)	587
AjnI	CCWGG	1 cut(s)	199
AluBI	AGCT	1 cut(s)	601
AluI	AGCT	1 cut(s)	601
AlwI	GGATC	2 cut(s)	137, 175
Ama87I	CYCGRG	2 cut(s)	356, 473
AoxI	GGCC	2 cut(s)	33, 197
ApeKI	GCWGC	1 cut(s)	79
AspLEI	GCGC	3 cut(s)	84, 248, 607
AsuHPI	GGTGA	4 cut(s)	297, 318, 360, 495
AsuNHI	GCTAGC	1 cut(s)	601
AvaI	CYCGRG	2 cut(s)	356, 473
AxyI	CCTNAGG	1 cut(s)	636
BanI	GGYRCC	3 cut(s)	349, 466, 484
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	277
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	1 cut(s)	201
BfaI	CTAG	1 cut(s)	602
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	608
BfuAI	ACCTGC	2 cut(s)	394, 433
BglII	AGATCT	1 cut(s)	104
BisI	GCNGC	2 cut(s)	80, 290
BlsI	GCNGC	2 cut(s)	81, 291
Bme1390I	CCNGG	1 cut(s)	201
BmeT110I	CYCGRG	2 cut(s)	356, 473
BmgBI	CACGTC	1 cut(s)	587
BmiI	GGNNCC	3 cut(s)	351, 468, 486
BmrFI	CCNGG	1 cut(s)	201
BmtI	GCTAGC	1 cut(s)	605
Bpu10I	CCTNAGC	1 cut(s)	333
BsaXI	ACNNNNNCTCC	4 cut(s)	397, 427, 436, 466
Bsc4I	CCNNNNNNNGG	1 cut(s)	152
Bse118I	RCCGGY	3 cut(s)	346, 463, 481
Bse21I	CCTNAGG	1 cut(s)	636
BseBI	CCWGG	1 cut(s)	201
BseGI	GGATG	3 cut(s)	526, 568, 589
BseLI	CCNNNNNNNGG	1 cut(s)	152
BseRI	GAGGAG	5 cut(s)	300, 363, 402, 441, 498
BseXI	GCAGC	1 cut(s)	91
BsgI	GTGCAG	3 cut(s)	98, 372, 411
BshFI	GGCC	2 cut(s)	35, 199
BshNI	GGYRCC	3 cut(s)	349, 466, 484
BsiHKCI	CYCGRG	2 cut(s)	356, 473
BsiSI	CCGG	4 cut(s)	347, 464, 482, 560
BslFI	GGGAC	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	152
BsmFI	GGGAC	1 cut(s)	200
BsmI	GAATGC	1 cut(s)	541
BsnI	GGCC	2 cut(s)	35, 199
BsoBI	CYCGRG	2 cut(s)	356, 473
Bsp143I	GATC	3 cut(s)	104, 142, 180
BspACI	CCGC	2 cut(s)	290, 581
BspANI	GGCC	2 cut(s)	35, 199
BspLI	GGNNCC	3 cut(s)	351, 468, 486
BspMI	ACCTGC	2 cut(s)	394, 433
BspOI	GCTAGC	1 cut(s)	605
BspPI	GGATC	2 cut(s)	137, 175
BspT107I	GGYRCC	3 cut(s)	349, 466, 484
BsrFI	RCCGGY	3 cut(s)	346, 463, 481
BssAI	RCCGGY	3 cut(s)	346, 463, 481
BssMI	GATC	3 cut(s)	104, 142, 180
Bst2UI	CCWGG	1 cut(s)	201
Bst4CI	ACNGT	5 cut(s)	285, 303, 366, 501, 627
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	2 cut(s)	333, 636
BstF5I	GGATG	3 cut(s)	526, 568, 589
BstH2I	RGCGCY	1 cut(s)	608
BstHHI	GCGC	3 cut(s)	84, 248, 607
BstKTI	GATC	3 cut(s)	107, 145, 183
BstMBI	GATC	3 cut(s)	104, 142, 180
BstMWI	GCNNNNNNNGC	5 cut(s)	65, 107, 116, 210, 295
BstNI	CCWGG	1 cut(s)	201
BstSCI	CCNGG	1 cut(s)	199
BstSFI	CTRYAG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
Bsu36I	CCTNAGG	1 cut(s)	636
BsuRI	GGCC	2 cut(s)	35, 199
BtrI	CACGTC	1 cut(s)	587
BtsCI	GGATG	3 cut(s)	526, 568, 589
BveI	ACCTGC	2 cut(s)	394, 433
Cac8I	GCNNGC	1 cut(s)	603
CfoI	GCGC	3 cut(s)	84, 248, 607
Cfr10I	RCCGGY	3 cut(s)	346, 463, 481
CseI	GACGC	1 cut(s)	202
CspCI	CAANNNNNGTGG	4 cut(s)	37, 72, 612, 647
DdeI	CTNAG	2 cut(s)	333, 636
DpnI	GATC	3 cut(s)	106, 144, 182
DpnII	GATC	3 cut(s)	104, 142, 180
EaeI	YGGCCR	1 cut(s)	197
EciI	GGCGGA	1 cut(s)	570
Eco81I	CCTNAGG	1 cut(s)	636
Eco88I	CYCGRG	2 cut(s)	356, 473
EcoRII	CCWGG	1 cut(s)	199
FaiI	YATR	3 cut(s)	172, 179, 236
FaqI	GGGAC	1 cut(s)	200
Fnu4HI	GCNGC	2 cut(s)	80, 290
FokI	GGATG	3 cut(s)	513, 555, 576
Fsp4HI	GCNGC	2 cut(s)	80, 290
FspBI	CTAG	1 cut(s)	602
GlaI	GCGC	3 cut(s)	83, 247, 606
GluI	GCNGC	2 cut(s)	80, 290
HaeII	RGCGCY	1 cut(s)	608
HaeIII	GGCC	2 cut(s)	35, 199
HapII	CCGG	4 cut(s)	347, 464, 482, 560
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	3 cut(s)	84, 248, 607
Hin6I	GCGC	3 cut(s)	82, 246, 605
HinP1I	GCGC	3 cut(s)	82, 246, 605
HinfI	GANTC	1 cut(s)	577
HpaII	CCGG	4 cut(s)	347, 464, 482, 560
HphI	GGTGA	4 cut(s)	297, 318, 360, 495
Hpy166II	GTNNAC	1 cut(s)	48
Hpy188I	TCNGA	4 cut(s)	147, 342, 534, 576
Hpy188III	TCNNGA	2 cut(s)	356, 473
Hpy8I	GTNNAC	1 cut(s)	48
Hpy99I	CGWCG	1 cut(s)	289
HpyAV	CCTTC	1 cut(s)	333
HpyCH4III	ACNGT	5 cut(s)	285, 303, 366, 501, 627
HpyCH4IV	ACGT	1 cut(s)	586
HpyCH4V	TGCA	6 cut(s)	68, 79, 174, 389, 428, 539
HpyF10VI	GCNNNNNNNGC	5 cut(s)	65, 107, 116, 210, 295
HpyF3I	CTNAG	2 cut(s)	333, 636
HpySE526I	ACGT	1 cut(s)	586
HspAI	GCGC	3 cut(s)	82, 246, 605
Kzo9I	GATC	3 cut(s)	104, 142, 180
LmnI	GCTCC	1 cut(s)	64
Lsp1109I	GCAGC	1 cut(s)	91
MaeI	CTAG	1 cut(s)	602
MaeII	ACGT	1 cut(s)	586
MaeIII	GTNAC	4 cut(s)	228, 303, 366, 501
MalI	GATC	3 cut(s)	106, 144, 182
MboI	GATC	3 cut(s)	104, 142, 180
MflI	RGATCY	1 cut(s)	104
MlyI	GAGTC	1 cut(s)	571
MmeI	TCCRAC	7 cut(s)	86, 299, 365, 401, 440, 479, 599
MseI	TTAA	1 cut(s)	9
MslI	CAYNNNNRTG	1 cut(s)	224
MspI	CCGG	4 cut(s)	347, 464, 482, 560
MspR9I	CCNGG	1 cut(s)	201
Mva1269I	GAATGC	1 cut(s)	541
MvaI	CCWGG	1 cut(s)	201
MwoI	GCNNNNNNNGC	5 cut(s)	65, 107, 116, 210, 295
NdeII	GATC	3 cut(s)	104, 142, 180
NheI	GCTAGC	1 cut(s)	601
NlaIV	GGNNCC	3 cut(s)	351, 468, 486
NmuCI	GTSAC	3 cut(s)	303, 366, 501
PaqCI	CACCTGC	2 cut(s)	394, 433
PctI	GAATGC	1 cut(s)	541
PkrI	GCNGC	2 cut(s)	81, 291
PleI	GAGTC	1 cut(s)	571
PpsI	GAGTC	1 cut(s)	571
Psp6I	CCWGG	1 cut(s)	199
PspGI	CCWGG	1 cut(s)	199
PspN4I	GGNNCC	3 cut(s)	351, 468, 486
PsuI	RGATCY	1 cut(s)	104
RseI	CAYNNNNRTG	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	9
SatI	GCNGC	2 cut(s)	80, 290
Sau3AI	GATC	3 cut(s)	104, 142, 180
SchI	GAGTC	1 cut(s)	571
ScrFI	CCNGG	1 cut(s)	201
SfcI	CTRYAG	1 cut(s)	234
SmiMI	CAYNNNNRTG	1 cut(s)	224
SsiI	CCGC	2 cut(s)	290, 581
SspMI	CTAG	1 cut(s)	602
StyD4I	CCNGG	1 cut(s)	199
TaaI	ACNGT	5 cut(s)	285, 303, 366, 501, 627
TaiI	ACGT	1 cut(s)	589
TauI	GCSGC	1 cut(s)	292
Tru1I	TTAA	1 cut(s)	9
Tru9I	TTAA	1 cut(s)	9
TseFI	GTSAC	3 cut(s)	303, 366, 501
TseI	GCWGC	1 cut(s)	79
Tsp45I	GTSAC	3 cut(s)	303, 366, 501
TspDTI	ATGAA	2 cut(s)	17, 108
XspI	CTAG	1 cut(s)	602

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.