Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0006950

Physical Location & Seq

Genomic Coordinates Reverse (-)

12485564 .. 12488800

Gene Structure 3237 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027536

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGAGAGTAAGAGGATAGGTTTGGTGGTGGTGGTGGTGGCGGCAATGGTGCTCGTGTCCCCCTTTTTCAATCCAACTGCCTTCGCCGTGCGGCATAAGAATTATGAAGTAGTCTCGGCCGCTGCGGAGCCTGATTCTAACGATCGTAACGAAGTAGCCTCGGCCGATGCTGAGCCGGGTCCTGTTGATTATTATGATAATATCATGGTAAAAGACGAAAGCAGCAGAAGTACTGGATCGAAAAGTCTGAAGGTCGACGACGGTTGTCCATCGTCGATATGCGATATGACAAAACCATGCAAGATTGGCTGTATTTGCGTTCCCTTTGTTCCGTTTCCTATTGGGACCTGCGTTGGTATCTGTTGTCAAATTAATCCACCACCAGGTGCACCACCACTACCACCATCGTCGACACCGTCACCATCGCCGTCACCGTCACCAGGATCTGCCTTGGTAACTGTTGCAATAGTCCACCGTCGCCTCCCAAGCCACCATCACCTCCTCTTCCGCCATCGTCACCTCCCTCCGCCATCACCACCTCCTCCCATGCATGCCACCACCACATCATCCGAGTACTCCACCACCACATCCTCTGGCTCCGCCACCTCATCCTCCAATGCTAGTGCCCTGTCCTCCCAAGCCACTGTCACTGCCTCCAGCGGCGGAACTACGTTTGGGTTTGGGGGGGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

231

Amino Acids

23.78

Weight (kDa)

6.69

Isoelectric Point (pI)

68.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g19910 FvH4_7g19930 FvH4_7g19950
prunus_persica	Prupe.2G216100_v2.0.a1 Prupe.2G216200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363911 RchiOBHm_Chr1g0363921 RchiOBHm_Chr7g0226451
rosa_laevigata	RLG00000027535 RLG00000027536 RLG00000027537
rosa_multiflora	Rmu_sc0001695.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004040 Rroxscaffold_4G00292840 Rroxscaffold_4G00292860 Rroxscaffold_4G00292870
rosa_rugosa	Rorug01G0310900 Rorug01G0311000 Rorug01G0311100
rosa_samantha	Rh1AG318900 Rh1AG319100 Rh1BG282000 Rh1BG282100 Rh1CG298500 Rh1DG313400 Rh1DG313500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	356
AccI	GTMKAC	2 cut(s)	255, 410
AciI	CCGC	9 cut(s)	41, 91, 120, 125, 508, 527, 600, 660, 663
AclWI	GGATC	2 cut(s)	244, 451
AcoI	YGGCCR	2 cut(s)	117, 162
AcuI	CTGAAG	1 cut(s)	269
AdeI	CACNNNGTG	1 cut(s)	386
AfaI	GTAC	2 cut(s)	232, 575
AfiI	CCNNNNNNNGG	2 cut(s)	383, 440
AgsI	TTSAA	1 cut(s)	70
AjnI	CCWGG	2 cut(s)	382, 439
Alw21I	GWGCWC	2 cut(s)	54, 391
Alw26I	GTCTC	1 cut(s)	118
Alw44I	GTGCAC	1 cut(s)	387
AlwI	GGATC	2 cut(s)	244, 451
AlwNI	CAGNNNCTG	1 cut(s)	446
AoxI	GGCC	2 cut(s)	117, 162
ApaLI	GTGCAC	1 cut(s)	387
ApeKI	GCWGC	2 cut(s)	122, 222
AseI	ATTAAT	1 cut(s)	372
AspS9I	GGNCC	2 cut(s)	179, 345
AsuC2I	CCSGG	1 cut(s)	177
AsuHPI	GGTGA	6 cut(s)	411, 423, 429, 488, 509, 525
AvaII	GGWCC	2 cut(s)	179, 345
BaeGI	GKGCMC	2 cut(s)	391, 628
BauI	CACGAG	1 cut(s)	53
Bbv12I	GWGCWC	2 cut(s)	54, 391
BbvI	GCAGC	2 cut(s)	109, 234
BccI	CCATC	6 cut(s)	277, 412, 430, 501, 519, 538
BceAI	ACGGC	2 cut(s)	71, 412
BciT130I	CCWGG	2 cut(s)	384, 441
BcnI	CCSGG	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	118
BfaI	CTAG	2 cut(s)	621, 691
BfuAI	ACCTGC	1 cut(s)	356
BisI	GCNGC	6 cut(s)	42, 92, 120, 123, 223, 661
BlpI	GCTNAGC	1 cut(s)	171
BlsI	GCNGC	6 cut(s)	43, 93, 121, 124, 224, 662
BmcAI	AGTACT	2 cut(s)	232, 575
Bme1390I	CCNGG	3 cut(s)	177, 384, 441
Bme18I	GGWCC	2 cut(s)	179, 345
BmgT120I	GGNCC	2 cut(s)	179, 345
BmiI	GGNNCC	4 cut(s)	129, 180, 346, 598
BmrFI	CCNGG	3 cut(s)	177, 384, 441
BmsI	GCATC	1 cut(s)	157
BoxI	GACNNNNGTC	1 cut(s)	264
BpmI	CTGGAG	1 cut(s)	640
Bpu1102I	GCTNAGC	1 cut(s)	171
BpuMI	CCSGG	1 cut(s)	177
BsaJI	CCNNGG	2 cut(s)	159, 450
Bsc4I	CCNNNNNNNGG	2 cut(s)	383, 440
Bse1I	ACTGG	1 cut(s)	238
Bse3DI	GCAATG	1 cut(s)	51
BseBI	CCWGG	2 cut(s)	384, 441
BseDI	CCNNGG	2 cut(s)	159, 450
BseGI	GGATG	3 cut(s)	566, 587, 608
BseLI	CCNNNNNNNGG	2 cut(s)	383, 440
BseMI	GCAATG	1 cut(s)	51
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	238
BseRI	GAGGAG	2 cut(s)	491, 531
BseSI	GKGCMC	2 cut(s)	391, 628
BseX3I	CGGCCG	2 cut(s)	117, 162
BseXI	GCAGC	2 cut(s)	109, 234
Bsh1285I	CGRYCG	3 cut(s)	120, 145, 165
BshFI	GGCC	2 cut(s)	119, 164
BsiEI	CGRYCG	3 cut(s)	120, 145, 165
BsiHKAI	GWGCWC	2 cut(s)	54, 391
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	2 cut(s)	43, 358
BslI	CCNNNNNNNGG	2 cut(s)	383, 440
BsmAI	GTCTC	1 cut(s)	118
BsmFI	GGGAC	2 cut(s)	43, 358
BsnI	GGCC	2 cut(s)	119, 164
Bsp1286I	GDGCHC	3 cut(s)	54, 391, 628
Bsp143I	GATC	3 cut(s)	142, 236, 443
Bsp1720I	GCTNAGC	1 cut(s)	171
BspACI	CCGC	9 cut(s)	41, 91, 120, 125, 508, 527, 600, 660, 663
BspANI	GGCC	2 cut(s)	119, 164
BspCNI	CTCAG	1 cut(s)	163
BspLI	GGNNCC	4 cut(s)	129, 180, 346, 598
BspMI	ACCTGC	1 cut(s)	356
BspPI	GGATC	2 cut(s)	244, 451
BsrDI	GCAATG	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	238
BssECI	CCNNGG	2 cut(s)	159, 450
BssMI	GATC	3 cut(s)	142, 236, 443
BssSI	CACGAG	1 cut(s)	53
BssT1I	CCWWGG	1 cut(s)	450
Bst2BI	CACGAG	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	384, 441
Bst4CI	ACNGT	6 cut(s)	263, 417, 435, 460, 476, 646
Bst6I	CTCTTC	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	552
BstDEI	CTNAG	1 cut(s)	171
BstF5I	GGATG	3 cut(s)	566, 587, 608
BstKTI	GATC	3 cut(s)	145, 239, 446
BstMAI	GTCTC	1 cut(s)	118
BstMBI	GATC	3 cut(s)	142, 236, 443
BstMCI	CGRYCG	3 cut(s)	120, 145, 165
BstMWI	GCNNNNNNNGC	3 cut(s)	306, 315, 486
BstNI	CCWGG	2 cut(s)	384, 441
BstNSI	RCATGY	1 cut(s)	554
BstPAI	GACNNNNGTC	1 cut(s)	264
BstSCI	CCNGG	3 cut(s)	175, 382, 439
BstSLI	GKGCMC	2 cut(s)	391, 628
BstV1I	GCAGC	2 cut(s)	109, 234
BstX2I	RGATCY	1 cut(s)	443
BstYI	RGATCY	1 cut(s)	443
BstZI	CGGCCG	2 cut(s)	117, 162
BsuRI	GGCC	2 cut(s)	119, 164
BtgZI	GCGATG	1 cut(s)	408
BtsCI	GGATG	3 cut(s)	566, 587, 608
BtsI	GCAGTG	1 cut(s)	648
BtsIMutI	CAGTG	2 cut(s)	642, 648
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	1 cut(s)	552
CaiI	CAGNNNCTG	1 cut(s)	446
Cfr13I	GGNCC	2 cut(s)	179, 345
CsiI	ACCWGGT	1 cut(s)	382
Csp6I	GTAC	2 cut(s)	231, 574
CviAII	CATG	4 cut(s)	205, 297, 547, 551
CviJI	RGCY	9 cut(s)	119, 130, 158, 164, 175, 309, 489, 597, 641
CviKI_1	RGCY	9 cut(s)	119, 130, 158, 164, 175, 309, 489, 597, 641
CviQI	GTAC	2 cut(s)	231, 574
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	3 cut(s)	144, 238, 445
DpnII	GATC	3 cut(s)	142, 236, 443
DraIII	CACNNNGTG	1 cut(s)	386
EaeI	YGGCCR	2 cut(s)	117, 162
EagI	CGGCCG	2 cut(s)	117, 162
Eam1104I	CTCTTC	1 cut(s)	509
EarI	CTCTTC	1 cut(s)	509
EciI	GGCGGA	4 cut(s)	497, 516, 589, 678
EclXI	CGGCCG	2 cut(s)	117, 162
Eco130I	CCWWGG	1 cut(s)	450
Eco47I	GGWCC	2 cut(s)	179, 345
Eco52I	CGGCCG	2 cut(s)	117, 162
Eco57I	CTGAAG	1 cut(s)	269
EcoO109I	RGGNCCY	2 cut(s)	179, 345
EcoRII	CCWGG	2 cut(s)	382, 439
EcoT14I	CCWWGG	1 cut(s)	450
EcoT22I	ATGCAT	1 cut(s)	552
ErhI	CCWWGG	1 cut(s)	450
FaeI	CATG	4 cut(s)	208, 300, 550, 554
FaiI	YATR	9 cut(s)	96, 105, 195, 206, 280, 287, 298, 548, 552
FaqI	GGGAC	2 cut(s)	43, 358
FatI	CATG	4 cut(s)	204, 296, 546, 550
FblI	GTMKAC	2 cut(s)	255, 410
Fnu4HI	GCNGC	6 cut(s)	42, 92, 120, 123, 223, 661
FokI	GGATG	3 cut(s)	553, 574, 595
Fsp4HI	GCNGC	6 cut(s)	42, 92, 120, 123, 223, 661
FspBI	CTAG	2 cut(s)	621, 691
GluI	GCNGC	6 cut(s)	42, 92, 120, 123, 223, 661
GsuI	CTGGAG	1 cut(s)	640
HaeIII	GGCC	2 cut(s)	119, 164
HapII	CCGG	1 cut(s)	176
Hin1II	CATG	4 cut(s)	208, 300, 550, 554
HincII	GTYRAC	2 cut(s)	256, 411
HindII	GTYRAC	2 cut(s)	256, 411
HinfI	GANTC	1 cut(s)	134
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	6 cut(s)	411, 423, 429, 488, 509, 525
Hpy166II	GTNNAC	4 cut(s)	256, 389, 411, 472
Hpy188I	TCNGA	2 cut(s)	249, 571
Hpy8I	GTNNAC	4 cut(s)	256, 389, 411, 472
Hpy99I	CGWCG	5 cut(s)	260, 263, 277, 412, 480
HpyAV	CCTTC	2 cut(s)	91, 244
HpyCH4III	ACNGT	6 cut(s)	263, 417, 435, 460, 476, 646
HpyCH4IV	ACGT	1 cut(s)	671
HpyCH4V	TGCA	4 cut(s)	300, 389, 464, 550
HpyF10VI	GCNNNNNNNGC	3 cut(s)	306, 315, 486
HpyF3I	CTNAG	1 cut(s)	171
HpySE526I	ACGT	1 cut(s)	671
Hsp92II	CATG	4 cut(s)	208, 300, 550, 554
Kzo9I	GATC	3 cut(s)	142, 236, 443
LmnI	GCTCC	2 cut(s)	127, 602
Lsp1109I	GCAGC	2 cut(s)	109, 234
LweI	GCATC	1 cut(s)	157
MabI	ACCWGGT	1 cut(s)	382
MaeI	CTAG	2 cut(s)	621, 691
MaeII	ACGT	1 cut(s)	671
MaeIII	GTNAC	7 cut(s)	146, 417, 429, 435, 454, 515, 646
MalI	GATC	3 cut(s)	144, 238, 445
MboI	GATC	3 cut(s)	142, 236, 443
MboII	GAAGA	1 cut(s)	496
MflI	RGATCY	1 cut(s)	443
MhlI	GDGCHC	3 cut(s)	54, 391, 628
MluCI	AATT	2 cut(s)	100, 369
MmeI	TCCRAC	1 cut(s)	98
Mph1103I	ATGCAT	1 cut(s)	552
MseI	TTAA	1 cut(s)	372
MspA1I	CMGCKG	2 cut(s)	122, 660
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	3 cut(s)	177, 384, 441
MvaI	CCWGG	2 cut(s)	384, 441
MwoI	GCNNNNNNNGC	3 cut(s)	306, 315, 486
NciI	CCSGG	1 cut(s)	177
NdeII	GATC	3 cut(s)	142, 236, 443
NlaIII	CATG	4 cut(s)	208, 300, 550, 554
NlaIV	GGNNCC	4 cut(s)	129, 180, 346, 598
NmeAIII	GCCGAG	2 cut(s)	95, 140
NmuCI	GTSAC	5 cut(s)	417, 429, 435, 515, 646
NsiI	ATGCAT	1 cut(s)	552
NspI	RCATGY	1 cut(s)	554
PaeI	GCATGC	1 cut(s)	554
PcsI	WCGNNNNNNNCGW	3 cut(s)	147, 413, 431
PfeI	GAWTC	1 cut(s)	134
PflFI	GACNNNGTC	1 cut(s)	415
PkrI	GCNGC	6 cut(s)	43, 93, 121, 124, 224, 662
Ple19I	CGATCG	1 cut(s)	145
PpuMI	RGGWCCY	2 cut(s)	179, 345
PshAI	GACNNNNGTC	1 cut(s)	264
PshBI	ATTAAT	1 cut(s)	372
Psp5II	RGGWCCY	2 cut(s)	179, 345
Psp6I	CCWGG	2 cut(s)	382, 439
PspGI	CCWGG	2 cut(s)	382, 439
PspN4I	GGNNCC	4 cut(s)	129, 180, 346, 598
PspPI	GGNCC	2 cut(s)	179, 345
PspPPI	RGGWCCY	2 cut(s)	179, 345
PstNI	CAGNNNCTG	1 cut(s)	446
PsuI	RGATCY	1 cut(s)	443
PsyI	GACNNNGTC	1 cut(s)	415
PvuI	CGATCG	1 cut(s)	145
RsaI	GTAC	2 cut(s)	232, 575
RsaNI	GTAC	2 cut(s)	231, 574
SalI	GTCGAC	2 cut(s)	254, 409
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	6 cut(s)	42, 92, 120, 123, 223, 661
Sau3AI	GATC	3 cut(s)	142, 236, 443
Sau96I	GGNCC	2 cut(s)	179, 345
ScaI	AGTACT	2 cut(s)	232, 575
ScrFI	CCNGG	3 cut(s)	177, 384, 441
SduI	GDGCHC	3 cut(s)	54, 391, 628
SetI	ASST	9 cut(s)	22, 255, 350, 388, 501, 522, 541, 608, 674
SexAI	ACCWGGT	1 cut(s)	382
SfaNI	GCATC	1 cut(s)	157
SinI	GGWCC	2 cut(s)	179, 345
SphI	GCATGC	1 cut(s)	554
Sse9I	AATT	2 cut(s)	100, 369
SsiI	CCGC	9 cut(s)	41, 91, 120, 125, 508, 527, 600, 660, 663
SspMI	CTAG	2 cut(s)	621, 691
StyD4I	CCNGG	3 cut(s)	175, 382, 439
StyI	CCWWGG	1 cut(s)	450
TaaI	ACNGT	6 cut(s)	263, 417, 435, 460, 476, 646
TaiI	ACGT	1 cut(s)	674
TaqI	TCGA	4 cut(s)	239, 255, 275, 410
TasI	AATT	2 cut(s)	100, 369
TatI	WGTACW	2 cut(s)	230, 573
TauI	GCSGC	4 cut(s)	44, 94, 122, 663
TfiI	GAWTC	1 cut(s)	134
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	2 cut(s)	649, 655
TseFI	GTSAC	5 cut(s)	417, 429, 435, 515, 646
TseI	GCWGC	2 cut(s)	122, 222
Tsp45I	GTSAC	5 cut(s)	417, 429, 435, 515, 646
TspDTI	ATGAA	1 cut(s)	120
TspGWI	ACGGA	1 cut(s)	321
TspRI	CASTG	2 cut(s)	649, 655
Tth111I	GACNNNGTC	1 cut(s)	415
VneI	GTGCAC	1 cut(s)	387
VpaK11BI	GGWCC	2 cut(s)	179, 345
VspI	ATTAAT	1 cut(s)	372
XceI	RCATGY	1 cut(s)	554
XmiI	GTMKAC	2 cut(s)	255, 410
XspI	CTAG	2 cut(s)	621, 691
ZrmI	AGTACT	2 cut(s)	232, 575
Zsp2I	ATGCAT	1 cut(s)	552

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.