Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006950

Physical Location & Seq

Genomic Coordinates Reverse (-)

13050455 .. 13050934

Gene Structure 480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00292840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 429 bp

ATGGAGACTAATAAGTTCAGTTTGGTGGTGGTAGTGGCAACGGTGGTTGTGCTCACCTTTTTCACTCCAACTGCCTTCGCCGTGTGGCATACAAATTATGAAGTAGCCTCGACAGCTGCAGACTCTGACGATCATATTGAAGTAGCCTTGGCCGCGGCTGAGCGTGACCTTGATGAGAGTATTGAAGTAGCCTCGGCCGCTGCTGAGCCTGCGGATCCTGTGGATTATTATGATAATATTATGGTAAAAAACGAAAGCATCATTATTACTGGGTTAATACGCCGGAAGATGGGTTGTATTTGCGTTCCCTTTGGAACGCTTCCTATTGGGCTCTGCATTGGTCTCTGTCATTGCAATTTTACTCCACCTCCAGGTCCACAGCCACAGCCGCCTTTAGTCTCACTATCACCGTCACCACTGATGTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004857 GO:0005575 GO:0005623 GO:0008150 GO:0016787 GO:0016788 GO:0030234 GO:0030599 GO:0043086 GO:0044092 GO:0044464 GO:0046910 GO:0050790 GO:0052689 GO:0065007 GO:0065009 GO:0071944 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko00040 ko01100 map00040 map01100

Pfam Domains

Protein Families

PMEI Pectinesterase

Protein Analysis

142

Amino Acids

15.24

Weight (kDa)

4.37

Isoelectric Point (pI)

58.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006950)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g19910 FvH4_7g19930 FvH4_7g19950
prunus_persica	Prupe.2G216100_v2.0.a1 Prupe.2G216200_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0363911 RchiOBHm_Chr1g0363921 RchiOBHm_Chr7g0226451
rosa_laevigata	RLG00000027535 RLG00000027536 RLG00000027537
rosa_multiflora	Rmu_sc0001695.1_g000001
rosa_roxburghii	Rroxscaffold_1G00004040 Rroxscaffold_4G00292840 Rroxscaffold_4G00292860 Rroxscaffold_4G00292870
rosa_rugosa	Rorug01G0310900 Rorug01G0311000 Rorug01G0311100
rosa_samantha	Rh1AG318900 Rh1AG319100 Rh1BG282000 Rh1BG282100 Rh1CG298500 Rh1DG313400 Rh1DG313500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	155
AciI	CCGC	5 cut(s)	153, 155, 198, 212, 389
AclWI	GGATC	2 cut(s)	209, 222
AcoI	YGGCCR	2 cut(s)	150, 195
AfiI	CCNNNNNNNGG	2 cut(s)	289, 371
AgsI	TTSAA	2 cut(s)	140, 185
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	1 cut(s)	116
AluI	AGCT	1 cut(s)	116
Alw21I	GWGCWC	1 cut(s)	54
Alw26I	GTCTC	2 cut(s)	347, 403
AlwI	GGATC	2 cut(s)	209, 222
AlwNI	CAGNNNCTG	1 cut(s)	125
AoxI	GGCC	2 cut(s)	150, 195
ApeKI	GCWGC	2 cut(s)	116, 200
AspS9I	GGNCC	1 cut(s)	374
AsuHPI	GGTGA	3 cut(s)	46, 399, 405
AvaII	GGWCC	1 cut(s)	374
BamHI	GGATCC	1 cut(s)	214
BanII	GRGCYC	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	2 cut(s)	103, 187
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	1 cut(s)	65
BciT130I	CCWGG	1 cut(s)	372
BcoDI	GTCTC	2 cut(s)	347, 403
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	6 cut(s)	117, 153, 156, 198, 201, 389
BlpI	GCTNAGC	2 cut(s)	159, 204
BlsI	GCNGC	6 cut(s)	118, 154, 157, 199, 202, 390
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	1 cut(s)	374
BmgT120I	GGNCC	1 cut(s)	374
BmiI	GGNNCC	1 cut(s)	216
BmrFI	CCNGG	1 cut(s)	372
BmrI	ACTGGG	1 cut(s)	279
BmsI	GCATC	1 cut(s)	267
BmuI	ACTGGG	1 cut(s)	279
BpmI	CTGGAG	1 cut(s)	354
Bpu1102I	GCTNAGC	2 cut(s)	159, 204
BsaI	GGTCTC	1 cut(s)	347
BsaJI	CCNNGG	3 cut(s)	147, 153, 192
BsaXI	ACNNNNNCTCC	2 cut(s)	352, 382
Bsc4I	CCNNNNNNNGG	2 cut(s)	289, 371
Bse1I	ACTGG	1 cut(s)	274
Bse3DI	GCAATG	1 cut(s)	349
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	3 cut(s)	147, 153, 192
BseLI	CCNNNNNNNGG	2 cut(s)	289, 371
BseMI	GCAATG	1 cut(s)	349
BseMII	CTCAG	2 cut(s)	150, 195
BseNI	ACTGG	1 cut(s)	274
BseX3I	CGGCCG	1 cut(s)	195
BseXI	GCAGC	2 cut(s)	103, 187
Bsh1236I	CGCG	1 cut(s)	155
Bsh1285I	CGRYCG	1 cut(s)	198
BshFI	GGCC	2 cut(s)	152, 197
BsiEI	CGRYCG	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	283
BslI	CCNNNNNNNGG	2 cut(s)	289, 371
BsmAI	GTCTC	2 cut(s)	347, 403
BsnI	GGCC	2 cut(s)	152, 197
Bso31I	GGTCTC	1 cut(s)	347
Bsp1286I	GDGCHC	2 cut(s)	54, 333
Bsp143I	GATC	2 cut(s)	130, 214
Bsp1720I	GCTNAGC	2 cut(s)	159, 204
BspACI	CCGC	5 cut(s)	153, 155, 198, 212, 389
BspANI	GGCC	2 cut(s)	152, 197
BspCNI	CTCAG	2 cut(s)	151, 196
BspFNI	CGCG	1 cut(s)	155
BspLI	GGNNCC	1 cut(s)	216
BspMAI	CTGCAG	1 cut(s)	121
BspPI	GGATC	2 cut(s)	209, 222
BspTNI	GGTCTC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	349
BsrI	ACTGG	1 cut(s)	274
BssECI	CCNNGG	3 cut(s)	147, 153, 192
BssMI	GATC	2 cut(s)	130, 214
BssT1I	CCWWGG	1 cut(s)	147
Bst2UI	CCWGG	1 cut(s)	372
Bst4CI	ACNGT	2 cut(s)	43, 411
BstC8I	GCNNGC	1 cut(s)	210
BstDEI	CTNAG	2 cut(s)	159, 204
BstDSI	CCRYGG	1 cut(s)	153
BstFNI	CGCG	1 cut(s)	155
BstKTI	GATC	2 cut(s)	133, 217
BstMAI	GTCTC	2 cut(s)	347, 403
BstMBI	GATC	2 cut(s)	130, 214
BstMCI	CGRYCG	1 cut(s)	198
BstMWI	GCNNNNNNNGC	5 cut(s)	113, 152, 197, 209, 388
BstNI	CCWGG	1 cut(s)	372
BstSCI	CCNGG	1 cut(s)	370
BstSFI	CTRYAG	1 cut(s)	117
BstUI	CGCG	1 cut(s)	155
BstV1I	GCAGC	2 cut(s)	103, 187
BstX2I	RGATCY	1 cut(s)	214
BstYI	RGATCY	1 cut(s)	214
BstZI	CGGCCG	1 cut(s)	195
BsuRI	GGCC	2 cut(s)	152, 197
BtgI	CCRYGG	1 cut(s)	153
BtsIMutI	CAGTG	1 cut(s)	416
Cac8I	GCNNGC	1 cut(s)	210
CaiI	CAGNNNCTG	1 cut(s)	125
Cfr13I	GGNCC	1 cut(s)	374
Cfr42I	CCGCGG	1 cut(s)	156
DdeI	CTNAG	2 cut(s)	159, 204
DpnI	GATC	2 cut(s)	132, 216
DpnII	GATC	2 cut(s)	130, 214
EaeI	YGGCCR	2 cut(s)	150, 195
EagI	CGGCCG	1 cut(s)	195
EclXI	CGGCCG	1 cut(s)	195
Eco130I	CCWWGG	1 cut(s)	147
Eco24I	GRGCYC	1 cut(s)	333
Eco31I	GGTCTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	374
Eco52I	CGGCCG	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	370
EcoT14I	CCWWGG	1 cut(s)	147
EcoT38I	GRGCYC	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	147
FaiI	YATR	5 cut(s)	90, 99, 135, 231, 242
Fnu4HI	GCNGC	6 cut(s)	117, 153, 156, 198, 201, 389
FriOI	GRGCYC	1 cut(s)	333
Fsp4HI	GCNGC	6 cut(s)	117, 153, 156, 198, 201, 389
GluI	GCNGC	6 cut(s)	117, 153, 156, 198, 201, 389
GsuI	CTGGAG	1 cut(s)	354
HaeIII	GGCC	2 cut(s)	152, 197
HapII	CCGG	1 cut(s)	283
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	283
HphI	GGTGA	3 cut(s)	46, 399, 405
Hpy166II	GTNNAC	1 cut(s)	377
Hpy188I	TCNGA	1 cut(s)	127
Hpy8I	GTNNAC	1 cut(s)	377
HpyAV	CCTTC	1 cut(s)	85
HpyCH4III	ACNGT	2 cut(s)	43, 411
HpyCH4V	TGCA	3 cut(s)	119, 336, 354
HpyF10VI	GCNNNNNNNGC	5 cut(s)	113, 152, 197, 209, 388
HpyF3I	CTNAG	2 cut(s)	159, 204
KspI	CCGCGG	1 cut(s)	156
Kzo9I	GATC	2 cut(s)	130, 214
LpnPI	CCDG	6 cut(s)	222, 231, 255, 296, 357, 384
Lsp1109I	GCAGC	2 cut(s)	103, 187
LweI	GCATC	1 cut(s)	267
MaeIII	GTNAC	2 cut(s)	164, 411
MalI	GATC	2 cut(s)	132, 216
MboI	GATC	2 cut(s)	130, 214
MboII	GAAGA	1 cut(s)	298
MflI	RGATCY	1 cut(s)	214
MhlI	GDGCHC	2 cut(s)	54, 333
MluCI	AATT	2 cut(s)	94, 355
MlyI	GAGTC	1 cut(s)	116
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	3 cut(s)	118, 202, 378
MseI	TTAA	1 cut(s)	275
MspA1I	CMGCKG	3 cut(s)	116, 155, 200
MspI	CCGG	1 cut(s)	283
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MvnI	CGCG	1 cut(s)	155
MwoI	GCNNNNNNNGC	5 cut(s)	113, 152, 197, 209, 388
NdeII	GATC	2 cut(s)	130, 214
NlaIV	GGNNCC	1 cut(s)	216
NmeAIII	GCCGAG	1 cut(s)	173
NmuCI	GTSAC	2 cut(s)	164, 411
PkrI	GCNGC	6 cut(s)	118, 154, 157, 199, 202, 390
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	370
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	1 cut(s)	374
PstI	CTGCAG	1 cut(s)	121
PstNI	CAGNNNCTG	1 cut(s)	125
PsuI	RGATCY	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	116
SacII	CCGCGG	1 cut(s)	156
SaqAI	TTAA	1 cut(s)	275
SatI	GCNGC	6 cut(s)	117, 153, 156, 198, 201, 389
Sau3AI	GATC	2 cut(s)	130, 214
Sau96I	GGNCC	1 cut(s)	374
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	372
SduI	GDGCHC	2 cut(s)	54, 333
SetI	ASST	5 cut(s)	59, 118, 171, 370, 376
SfaNI	GCATC	1 cut(s)	267
SfcI	CTRYAG	1 cut(s)	117
Sfr303I	CCGCGG	1 cut(s)	156
SgrBI	CCGCGG	1 cut(s)	156
SinI	GGWCC	1 cut(s)	374
Sse9I	AATT	2 cut(s)	94, 355
SsiI	CCGC	5 cut(s)	153, 155, 198, 212, 389
SspI	AATATT	1 cut(s)	238
StyD4I	CCNGG	1 cut(s)	370
StyI	CCWWGG	1 cut(s)	147
TaaI	ACNGT	2 cut(s)	43, 411
TaqI	TCGA	1 cut(s)	110
TasI	AATT	2 cut(s)	94, 355
TauI	GCSGC	4 cut(s)	155, 158, 200, 391
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	1 cut(s)	423
TseFI	GTSAC	2 cut(s)	164, 411
TseI	GCWGC	2 cut(s)	116, 200
Tsp45I	GTSAC	2 cut(s)	164, 411
TspDTI	ATGAA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	423
VpaK11BI	GGWCC	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.