RchiOBHm_Chr7g0226451

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0006950
Physical Location & Seq
Forward (+)
49623125 .. 49623690
566 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20283

Sequence Viewer

Length: 267 bp
ATGGTTATGGCTGCTGAGAAGAAAGTGATGGGTTTTAACTGGCTGCTGGTGTTGACCATGGTACTAATATTTGTGTCACCCAGTTTTGTTCCGCTTGTATCTGCTCGTTGTGGGAGTACTGCACCTTTAAACAATGGGTGTCCCGGTTCCACATGCAACATACTTGGGAGCGACGATTGCTGCCCTGGTTGTCACTGCATTGGTCCTCTCGTGGGTATCTGCGTTGACTTTGGGGGCTGCTGCGAAAACGGGCTCCCTAATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.08

Weight (kDa)

4.83

Isoelectric Point (pI)

37.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 92
AfaI GTAC 2 cut(s) 63, 118
AfiI CCNNNNNNNGG 1 cut(s) 212
AjnI CCWGG 1 cut(s) 184
ApeKI GCWGC 5 cut(s) 11, 43, 180, 237, 240
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 144
AsuHPI GGTGA 1 cut(s) 69
AvaII GGWCC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 255
BauI CACGAG 1 cut(s) 209
BbvI GCAGC 4 cut(s) 30, 167, 224, 227
BccI CCATC 1 cut(s) 22
BciT130I CCWGG 1 cut(s) 186
BcnI CCSGG 1 cut(s) 144
BisI GCNGC 5 cut(s) 12, 44, 181, 238, 241
BlsI GCNGC 5 cut(s) 13, 45, 182, 239, 242
BmcAI AGTACT 1 cut(s) 118
Bme1390I CCNGG 2 cut(s) 144, 186
Bme18I GGWCC 1 cut(s) 203
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 2 cut(s) 148, 254
BmrFI CCNGG 2 cut(s) 144, 186
BmrI ACTGGG 1 cut(s) 75
BmuI ACTGGG 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 144
BsaJI CCNNGG 2 cut(s) 57, 184
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse1I ACTGG 2 cut(s) 44, 81
BseBI CCWGG 1 cut(s) 186
BseDI CCNNGG 2 cut(s) 57, 184
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMII CTCAG 1 cut(s) 6
BseNI ACTGG 2 cut(s) 44, 81
BseXI GCAGC 4 cut(s) 30, 167, 224, 227
BsgI GTGCAG 1 cut(s) 105
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 126
BslI CCNNNNNNNGG 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 126
Bsp1286I GDGCHC 1 cut(s) 255
Bsp19I CCATGG 1 cut(s) 57
BspACI CCGC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 7
BspLI GGNNCC 2 cut(s) 148, 254
BsrI ACTGG 2 cut(s) 44, 81
BssECI CCNNGG 2 cut(s) 57, 184
BssSI CACGAG 1 cut(s) 209
BssT1I CCWWGG 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 209
Bst2UI CCWGG 1 cut(s) 186
BstDEI CTNAG 1 cut(s) 15
BstDSI CCRYGG 1 cut(s) 57
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstNI CCWGG 1 cut(s) 186
BstNSI RCATGY 1 cut(s) 156
BstSCI CCNGG 2 cut(s) 142, 184
BstV1I GCAGC 4 cut(s) 30, 167, 224, 227
BtgI CCRYGG 1 cut(s) 57
BtsI GCAGTG 1 cut(s) 193
BtsIMutI CAGTG 1 cut(s) 193
Cfr13I GGNCC 1 cut(s) 203
Csp6I GTAC 2 cut(s) 62, 117
CviAII CATG 2 cut(s) 58, 153
CviJI RGCY 4 cut(s) 11, 43, 237, 253
CviKI_1 RGCY 4 cut(s) 11, 43, 237, 253
CviQI GTAC 2 cut(s) 62, 117
DdeI CTNAG 1 cut(s) 15
DraI TTTAAA 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 57
Eco24I GRGCYC 1 cut(s) 255
Eco47I GGWCC 1 cut(s) 203
EcoRII CCWGG 1 cut(s) 184
EcoT14I CCWWGG 1 cut(s) 57
EcoT38I GRGCYC 1 cut(s) 255
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 2 cut(s) 61, 156
FaiI YATR 4 cut(s) 8, 59, 154, 161
FaqI GGGAC 1 cut(s) 126
FatI CATG 2 cut(s) 57, 152
Fnu4HI GCNGC 5 cut(s) 12, 44, 181, 238, 241
FriOI GRGCYC 1 cut(s) 255
Fsp4HI GCNGC 5 cut(s) 12, 44, 181, 238, 241
GluI GCNGC 5 cut(s) 12, 44, 181, 238, 241
HapII CCGG 1 cut(s) 144
Hin1II CATG 2 cut(s) 61, 156
HincII GTYRAC 2 cut(s) 54, 226
HindII GTYRAC 2 cut(s) 54, 226
HpaII CCGG 1 cut(s) 144
HphI GGTGA 1 cut(s) 69
Hpy166II GTNNAC 2 cut(s) 54, 226
Hpy188I TCNGA 1 cut(s) 266
Hpy8I GTNNAC 2 cut(s) 54, 226
Hpy99I CGWCG 1 cut(s) 176
HpyCH4V TGCA 3 cut(s) 122, 156, 198
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpyF3I CTNAG 1 cut(s) 15
Hsp92II CATG 2 cut(s) 61, 156
LmnI GCTCC 2 cut(s) 168, 258
LpnPI CCDG 6 cut(s) 25, 32, 94, 157, 171, 198
Lsp1109I GCAGC 4 cut(s) 30, 167, 224, 227
MaeIII GTNAC 2 cut(s) 75, 191
MboII GAAGA 1 cut(s) 31
MhlI GDGCHC 1 cut(s) 255
MnlI CCTC 1 cut(s) 216
MseI TTAA 2 cut(s) 36, 128
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 2 cut(s) 144, 186
MvaI CCWGG 1 cut(s) 186
MwoI GCNNNNNNNGC 1 cut(s) 177
NciI CCSGG 1 cut(s) 144
NcoI CCATGG 1 cut(s) 57
NlaIII CATG 2 cut(s) 61, 156
NlaIV GGNNCC 2 cut(s) 148, 254
NmuCI GTSAC 2 cut(s) 75, 191
NspI RCATGY 1 cut(s) 156
PkrI GCNGC 5 cut(s) 13, 45, 182, 239, 242
Psp6I CCWGG 1 cut(s) 184
PspGI CCWGG 1 cut(s) 184
PspN4I GGNNCC 2 cut(s) 148, 254
PspPI GGNCC 1 cut(s) 203
RsaI GTAC 2 cut(s) 63, 118
RsaNI GTAC 2 cut(s) 62, 117
SaqAI TTAA 2 cut(s) 36, 128
SatI GCNGC 5 cut(s) 12, 44, 181, 238, 241
Sau96I GGNCC 1 cut(s) 203
ScaI AGTACT 1 cut(s) 118
ScrFI CCNGG 2 cut(s) 144, 186
SduI GDGCHC 1 cut(s) 255
SetI ASST 1 cut(s) 127
SinI GGWCC 1 cut(s) 203
SsiI CCGC 1 cut(s) 92
SspI AATATT 1 cut(s) 69
StyD4I CCNGG 2 cut(s) 142, 184
StyI CCWWGG 1 cut(s) 57
TatI WGTACW 1 cut(s) 116
Tru1I TTAA 2 cut(s) 36, 128
Tru9I TTAA 2 cut(s) 36, 128
TscAI CASTG 1 cut(s) 200
TseFI GTSAC 2 cut(s) 75, 191
TseI GCWGC 5 cut(s) 11, 43, 180, 237, 240
Tsp45I GTSAC 2 cut(s) 75, 191
TspRI CASTG 1 cut(s) 200
VpaK11BI GGWCC 1 cut(s) 203
XceI RCATGY 1 cut(s) 156
ZrmI AGTACT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.