Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004547

Physical Location & Seq

Genomic Coordinates Reverse (-)

16720904 .. 16723359

Gene Structure 2456 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20610.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGACAACTTTGAAAGTAAGTTTCAGAGGCACTGCTCTTCCTGCTTCTTCATCACCTCAAACTTCCCGGCATCGCTTTTCAGATTCAGTCACATTTTCTCTCCCCAAGAAATCATTGATACCCAAGTTTCCAAACACCACTATACTATGTCATCCTAAGCTTGTTCTTCAAGCTTCTTTTGGGAAGAAGACCAGAGCTTCAGTCTCTGCAATAGTGGCAACCGGTGTACAAGAGGTTCTTCCACCAGCTCTTACTTCCAGCTCAGTCCCACCTACACTCTTTGATGGGAAAACAAGGTTGTATGTATCCTACACATGCCCATTTGCTCAGCGCGCATGGATTGTCCGGAATTGTAAGGGATTGGAGGAAAAGATAGAATTGGTTCCTCTTGATCTGCTAGACAGGCCTTCTTGGTACAAAGAAAAAGTGAACTCTACTAACAAGGTGCCATCACTGGAACACAATAATGAAGTCATAGTAGAGAGCCTTGATTTGATCAAGTATATGGACTGTAACTTTGAAGGGCCTTCACTGTTCCCAGATGATCCTGCAGAGAGAGAATTTGCAGAAGAGTTGTTTTCCTACACCGACTCCTTCAACACTTCTGTGTTCTCATTTTTCAAAGGAGATGGAACTGAGGCAGCTGCCGGTGCTGCATTTGACTATATTGAAACTGCTCTTTTGAAATTTGAAGAGGGACCTTTCTTTCTTGGCCAATTCAGTCTGGTGGATATAGCTTATGCTCCATTCATTGAAAGATTTCAGCCTTTTGCATTGGATGTGAAGAAGTTCGACATAACTGCAGGCAGACCTAAACTGGCAGCATGGATTCAGGAGATGGACAAAAACAATGCTTACAATAGAACACGACGTGATCCTAAAGTGCATGTCGAAATCTACAAGAAACGCTTTCCGGTTCAGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

309

Amino Acids

34.69

Weight (kDa)

8.22

Isoelectric Point (pI)

44.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	100 - 176	2.7e-19	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	105 - 170	3.4e-15	Glutathione S-transferase, N-terminal domain
GST_C_2	PF13410	215 - 278	9.5e-11	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20610 FvH4_7g20620 FvH4_7g20620
malus_domestica	MD01G1115000.v1.1 MD07G1183000.v1.1
prunus_persica	Prupe.2G221700_v2.0.a1 Prupe.2G221700_v2.0.a1
pyrus_communis	pycom01g14390
rosa_chinensis	RchiOBHm_Chr1g0364651 RchiOBHm_Chr1g0364661
rosa_laevigata	RLG00000027469
rosa_multiflora	Rmu_sc0024218.1_g000001 Rmu_ssc0000112.1_g000036 Rmu_ssc0000112.1_g000037 Rmu_ssc0000282.1_g000016
rosa_roxburghii	Rroxscaffold_1G00029240 Rroxscaffold_4G00291770 Rroxscaffold_4G00292190 Rroxscaffold_7G00185900 Rroxscaffold_7G00191070 Rroxscaffold_7G00191090 Rroxscaffold_7G00197330
rosa_rugosa	Rorug01G0317400
rosa_samantha	Rh1AG326400 Rh1AG326500 Rh1BG287600 Rh1BG287700 Rh1CG304400 Rh1CG304500 Rh1DG319300 Rh1DG319400
rosa_wichuraiana	Rw1G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	445
AccII	CGCG	1 cut(s)	333
AccIII	TCCGGA	1 cut(s)	345
AclWI	GGATC	2 cut(s)	539, 869
AcoI	YGGCCR	1 cut(s)	712
AcsI	RAATTY	2 cut(s)	560, 686
AcuI	CTGAAG	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	872
AfaI	GTAC	2 cut(s)	228, 416
AgeI	ACCGGT	1 cut(s)	221
AgsI	TTSAA	9 cut(s)	13, 170, 521, 598, 622, 671, 685, 692, 755
AjiI	CACGTC	1 cut(s)	872
AleI	CACNNNNGTG	1 cut(s)	605
AluBI	AGCT	7 cut(s)	160, 173, 197, 248, 261, 644, 737
AluI	AGCT	7 cut(s)	160, 173, 197, 248, 261, 644, 737
Alw26I	GTCTC	1 cut(s)	208
AlwI	GGATC	2 cut(s)	539, 869
AlwNI	CAGNNNCTG	1 cut(s)	206
Aor13HI	TCCGGA	1 cut(s)	345
AoxI	GGCC	3 cut(s)	404, 524, 712
ApeKI	GCWGC	4 cut(s)	641, 644, 653, 821
ApoI	RAATTY	2 cut(s)	560, 686
ArsI	GACNNNNNNTTYG	2 cut(s)	500, 532
AsiGI	ACCGGT	1 cut(s)	221
Asp700I	GAANNNNTTC	3 cut(s)	381, 759, 788
AspLEI	GCGC	2 cut(s)	333, 335
AspS9I	GGNCC	2 cut(s)	524, 698
AsuC2I	CCSGG	1 cut(s)	67
AsuHPI	GGTGA	1 cut(s)	45
AvaII	GGWCC	1 cut(s)	698
BaeI	ACNNNNGTAYC	2 cut(s)	110, 143
BalI	TGGCCA	1 cut(s)	714
BanI	GGYRCC	1 cut(s)	445
BbsI	GAAGAC	1 cut(s)	194
BbvI	GCAGC	4 cut(s)	631, 640, 653, 833
BccI	CCATC	4 cut(s)	278, 457, 623, 832
BcgI	CGANNNNNNTGC	2 cut(s)	782, 816
BciVI	GTATCC	1 cut(s)	316
BclI	TGATCA	1 cut(s)	495
BcnI	CCSGG	1 cut(s)	67
BcoDI	GTCTC	1 cut(s)	208
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	2 cut(s)	549, 801
BfuI	GTATCC	1 cut(s)	316
BisI	GCNGC	4 cut(s)	642, 645, 654, 822
BlpI	GCTNAGC	1 cut(s)	327
BlsI	GCNGC	4 cut(s)	643, 646, 655, 823
Bme1390I	CCNGG	1 cut(s)	67
Bme18I	GGWCC	1 cut(s)	698
BmgBI	CACGTC	1 cut(s)	872
BmgT120I	GGNCC	2 cut(s)	524, 698
BmiI	GGNNCC	3 cut(s)	384, 447, 699
BmrFI	CCNGG	1 cut(s)	67
BmsI	GCATC	1 cut(s)	79
BpiI	GAAGAC	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	156
Bpu1102I	GCTNAGC	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	67
BsaWI	WCCGGW	3 cut(s)	221, 345, 913
BsaXI	ACNNNNNCTCC	2 cut(s)	575, 605
Bse118I	RCCGGY	2 cut(s)	221, 647
Bse1I	ACTGG	2 cut(s)	459, 822
BseAI	TCCGGA	1 cut(s)	345
BseGI	GGATG	2 cut(s)	151, 784
BseMII	CTCAG	3 cut(s)	276, 341, 627
BseNI	ACTGG	2 cut(s)	459, 822
BsePI	GCGCGC	1 cut(s)	331
BseXI	GCAGC	4 cut(s)	631, 640, 653, 833
Bsh1236I	CGCG	1 cut(s)	333
BshFI	GGCC	3 cut(s)	406, 526, 714
BshNI	GGYRCC	1 cut(s)	445
BshTI	ACCGGT	1 cut(s)	221
BsiSI	CCGG	5 cut(s)	67, 222, 346, 648, 914
BslFI	GGGAC	2 cut(s)	251, 711
BsmAI	GTCTC	1 cut(s)	208
BsmFI	GGGAC	2 cut(s)	251, 711
BsnI	GGCC	3 cut(s)	406, 526, 714
Bsp13I	TCCGGA	1 cut(s)	345
Bsp1407I	TGTACA	1 cut(s)	226
Bsp143I	GATC	4 cut(s)	391, 495, 544, 874
Bsp1720I	GCTNAGC	1 cut(s)	327
BspANI	GGCC	3 cut(s)	406, 526, 714
BspCNI	CTCAG	3 cut(s)	275, 340, 628
BspEI	TCCGGA	1 cut(s)	345
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	3 cut(s)	384, 447, 699
BspMAI	CTGCAG	2 cut(s)	553, 805
BspPI	GGATC	2 cut(s)	539, 869
BspQI	GCTCTTC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	445
BsrFI	RCCGGY	2 cut(s)	221, 647
BsrGI	TGTACA	1 cut(s)	226
BsrI	ACTGG	2 cut(s)	459, 822
BssAI	RCCGGY	2 cut(s)	221, 647
BssHII	GCGCGC	1 cut(s)	331
BssMI	GATC	4 cut(s)	391, 495, 544, 874
Bst4CI	ACNGT	2 cut(s)	512, 534
Bst6I	CTCTTC	3 cut(s)	42, 564, 687
BstAUI	TGTACA	1 cut(s)	226
BstC8I	GCNNGC	2 cut(s)	333, 805
BstDEI	CTNAG	4 cut(s)	156, 262, 327, 636
BstF5I	GGATG	2 cut(s)	151, 784
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	333, 335
BstKTI	GATC	4 cut(s)	394, 498, 547, 877
BstMAI	GTCTC	1 cut(s)	208
BstMBI	GATC	4 cut(s)	391, 495, 544, 874
BstMWI	GCNNNNNNNGC	6 cut(s)	41, 215, 332, 403, 650, 653
BstNSI	RCATGY	2 cut(s)	318, 890
BstSCI	CCNGG	1 cut(s)	65
BstSFI	CTRYAG	2 cut(s)	549, 801
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	4 cut(s)	631, 640, 653, 833
BstV2I	GAAGAC	1 cut(s)	194
BsuI	GTATCC	1 cut(s)	316
BsuRI	GGCC	3 cut(s)	406, 526, 714
BtgZI	GCGATG	1 cut(s)	56
BtrI	CACGTC	1 cut(s)	872
BtsCI	GGATG	2 cut(s)	151, 784
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	3 cut(s)	30, 452, 530
Cac8I	GCNNGC	2 cut(s)	333, 805
CaiI	CAGNNNCTG	1 cut(s)	206
CfoI	GCGC	2 cut(s)	333, 335
Cfr10I	RCCGGY	2 cut(s)	221, 647
Cfr13I	GGNCC	2 cut(s)	524, 698
Csp6I	GTAC	2 cut(s)	227, 415
CspAI	ACCGGT	1 cut(s)	221
CviAII	CATG	4 cut(s)	315, 336, 825, 887
CviQI	GTAC	2 cut(s)	227, 415
DdeI	CTNAG	4 cut(s)	156, 262, 327, 636
DpnI	GATC	4 cut(s)	393, 497, 546, 876
DpnII	GATC	4 cut(s)	391, 495, 544, 874
DraIII	CACNNNGTG	1 cut(s)	872
EaeI	YGGCCR	1 cut(s)	712
Eam1104I	CTCTTC	3 cut(s)	42, 564, 687
EarI	CTCTTC	3 cut(s)	42, 564, 687
Eco147I	AGGCCT	1 cut(s)	406
Eco47I	GGWCC	1 cut(s)	698
Eco57I	CTGAAG	1 cut(s)	183
EcoO109I	RGGNCCY	2 cut(s)	524, 698
FaeI	CATG	4 cut(s)	318, 339, 828, 890
FalI	AAGNNNNNCTT	4 cut(s)	222, 254, 893, 925
FaqI	GGGAC	2 cut(s)	251, 711
FatI	CATG	4 cut(s)	314, 335, 824, 886
FbaI	TGATCA	1 cut(s)	495
Fnu4HI	GCNGC	4 cut(s)	642, 645, 654, 822
FokI	GGATG	2 cut(s)	138, 791
Fsp4HI	GCNGC	4 cut(s)	642, 645, 654, 822
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	2 cut(s)	332, 334
GluI	GCNGC	4 cut(s)	642, 645, 654, 822
HaeIII	GGCC	3 cut(s)	406, 526, 714
HapII	CCGG	5 cut(s)	67, 222, 346, 648, 914
HhaI	GCGC	2 cut(s)	333, 335
Hin1II	CATG	4 cut(s)	318, 339, 828, 890
Hin6I	GCGC	2 cut(s)	331, 333
HinP1I	GCGC	2 cut(s)	331, 333
HindIII	AAGCTT	2 cut(s)	158, 171
HinfI	GANTC	3 cut(s)	83, 590, 829
HpaII	CCGG	5 cut(s)	67, 222, 346, 648, 914
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	2 cut(s)	227, 430
Hpy188I	TCNGA	2 cut(s)	26, 82
Hpy188III	TCNNGA	3 cut(s)	346, 389, 833
Hpy8I	GTNNAC	2 cut(s)	227, 430
Hpy99I	CGWCG	1 cut(s)	873
HpyAV	CCTTC	4 cut(s)	417, 515, 537, 604
HpyCH4III	ACNGT	2 cut(s)	512, 534
HpyCH4IV	ACGT	1 cut(s)	871
HpyCH4V	TGCA	7 cut(s)	209, 551, 566, 656, 773, 803, 886
HpyF10VI	GCNNNNNNNGC	6 cut(s)	41, 215, 332, 403, 650, 653
HpyF3I	CTNAG	4 cut(s)	156, 262, 327, 636
HpySE526I	ACGT	1 cut(s)	871
Hsp92II	CATG	4 cut(s)	318, 339, 828, 890
HspAI	GCGC	2 cut(s)	331, 333
Kpn2I	TCCGGA	1 cut(s)	345
Ksp22I	TGATCA	1 cut(s)	495
Kzo9I	GATC	4 cut(s)	391, 495, 544, 874
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	748
Lsp1109I	GCAGC	4 cut(s)	631, 640, 653, 833
LweI	GCATC	1 cut(s)	79
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	1 cut(s)	871
MaeIII	GTNAC	2 cut(s)	88, 512
MalI	GATC	4 cut(s)	393, 497, 546, 876
MboI	GATC	4 cut(s)	391, 495, 544, 874
MboII	GAAGA	9 cut(s)	29, 39, 158, 196, 199, 230, 581, 704, 796
MlsI	TGGCCA	1 cut(s)	714
MluCI	AATT	5 cut(s)	349, 377, 560, 686, 716
MluNI	TGGCCA	1 cut(s)	714
MlyI	GAGTC	1 cut(s)	584
MnlI	CCTC	7 cut(s)	20, 66, 226, 358, 396, 631, 688
Mox20I	TGGCCA	1 cut(s)	714
MroI	TCCGGA	1 cut(s)	345
MroXI	GAANNNNTTC	3 cut(s)	381, 759, 788
MscI	TGGCCA	1 cut(s)	714
MslI	CAYNNNNRTG	2 cut(s)	465, 605
Msp20I	TGGCCA	1 cut(s)	714
MspA1I	CMGCKG	1 cut(s)	644
MspI	CCGG	5 cut(s)	67, 222, 346, 648, 914
MspR9I	CCNGG	1 cut(s)	67
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	6 cut(s)	41, 215, 332, 403, 650, 653
NciI	CCSGG	1 cut(s)	67
NdeII	GATC	4 cut(s)	391, 495, 544, 874
NlaIII	CATG	4 cut(s)	318, 339, 828, 890
NlaIV	GGNNCC	3 cut(s)	384, 447, 699
NmuCI	GTSAC	1 cut(s)	88
NspI	RCATGY	2 cut(s)	318, 890
OliI	CACNNNNGTG	1 cut(s)	605
PauI	GCGCGC	1 cut(s)	331
PceI	AGGCCT	1 cut(s)	406
PciSI	GCTCTTC	1 cut(s)	42
PdmI	GAANNNNTTC	3 cut(s)	381, 759, 788
PfeI	GAWTC	2 cut(s)	83, 829
PinAI	ACCGGT	1 cut(s)	221
PkrI	GCNGC	4 cut(s)	643, 646, 655, 823
PleI	GAGTC	1 cut(s)	584
PpsI	GAGTC	1 cut(s)	584
PpuMI	RGGWCCY	1 cut(s)	698
Psp5II	RGGWCCY	1 cut(s)	698
PspN4I	GGNNCC	3 cut(s)	384, 447, 699
PspPI	GGNCC	2 cut(s)	524, 698
PspPPI	RGGWCCY	1 cut(s)	698
PsrI	GAACNNNNNNTAC	2 cut(s)	219, 251
PstI	CTGCAG	2 cut(s)	553, 805
PstNI	CAGNNNCTG	1 cut(s)	206
PteI	GCGCGC	1 cut(s)	331
PvuII	CAGCTG	1 cut(s)	644
RsaI	GTAC	2 cut(s)	228, 416
RsaNI	GTAC	2 cut(s)	227, 415
RseI	CAYNNNNRTG	2 cut(s)	465, 605
SapI	GCTCTTC	1 cut(s)	42
SatI	GCNGC	4 cut(s)	642, 645, 654, 822
Sau3AI	GATC	4 cut(s)	391, 495, 544, 874
Sau96I	GGNCC	2 cut(s)	524, 698
SchI	GAGTC	1 cut(s)	584
ScrFI	CCNGG	1 cut(s)	67
SfaNI	GCATC	1 cut(s)	79
SfcI	CTRYAG	2 cut(s)	549, 801
SinI	GGWCC	1 cut(s)	698
SmiMI	CAYNNNNRTG	2 cut(s)	465, 605
Sse9I	AATT	5 cut(s)	349, 377, 560, 686, 716
SseBI	AGGCCT	1 cut(s)	406
SspMI	CTAG	1 cut(s)	398
StuI	AGGCCT	1 cut(s)	406
StyD4I	CCNGG	1 cut(s)	65
TaaI	ACNGT	2 cut(s)	512, 534
TaiI	ACGT	1 cut(s)	874
TaqI	TCGA	2 cut(s)	792, 891
TasI	AATT	5 cut(s)	349, 377, 560, 686, 716
TatI	WGTACW	1 cut(s)	226
TfiI	GAWTC	2 cut(s)	83, 829
TscAI	CASTG	3 cut(s)	37, 459, 537
TseFI	GTSAC	1 cut(s)	88
TseI	GCWGC	4 cut(s)	641, 644, 653, 821
Tsp45I	GTSAC	1 cut(s)	88
TspDTI	ATGAA	3 cut(s)	39, 483, 739
TspRI	CASTG	3 cut(s)	37, 459, 537
VpaK11BI	GGWCC	1 cut(s)	698
XapI	RAATTY	2 cut(s)	560, 686
XceI	RCATGY	2 cut(s)	318, 890
XmnI	GAANNNNTTC	3 cut(s)	381, 759, 788
XspI	CTAG	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.