Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004547

Physical Location & Seq

Genomic Coordinates Reverse (-)

31569030 .. 31569614

Gene Structure 585 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00191070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGATGGATCTGCAGCGATTGCCGGAGGGTTGCATAGCCAACATCATATCGTTGACGACTCTGAAGAGGTCCGCCGCCCGCAACGGACCTGTCCTCCTAAGCTTCGACTTCAAGCTAAAGCAACCGAGCTTCACTCTCGCAACAATGGCAATCGGTGTGCAAGAGGCTCTTCCACCAGCTCTTACTTCTACCTCGGACCCTCCTTCAATCTTCGATGGGAAAACAAGGTTGTATATATCTTACACATGTCCATTTGCACGGCGTGCGTGGATTGCCCGGAACTGCAAGGGATTGGAGGAAAAGATAGAATTGGTTCCTATTAATCTGCAAGGCAGGCCTTCTTGGTACAAAGAGAAAGTCTACCCTCCTAACAAGGTGCCATCACCGGAACACAATAACGAAGTCAAAGGAGAGAGTCTTGATTTGATTAGATACATCGACGGTAACTTTGAAGGGCCTTCACTGTTCCTCGATGATCCTGCAAAGAGAGAGTTTGCAGAAGAGAAGGACAAAGCAGGAAAGGAAGGCAAGTTTATTTGCGTGGATACGATAAAGAAGACAAAGCAGCAAGAGCCTACGATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

194

Amino Acids

21.79

Weight (kDa)

8.6

Isoelectric Point (pI)

53.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	77 - 153	2.1e-18	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	82 - 147	1.4e-12	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20610 FvH4_7g20620 FvH4_7g20620
malus_domestica	MD01G1115000.v1.1 MD07G1183000.v1.1
prunus_persica	Prupe.2G221700_v2.0.a1 Prupe.2G221700_v2.0.a1
pyrus_communis	pycom01g14390
rosa_chinensis	RchiOBHm_Chr1g0364651 RchiOBHm_Chr1g0364661
rosa_laevigata	RLG00000027469
rosa_multiflora	Rmu_sc0024218.1_g000001 Rmu_ssc0000112.1_g000036 Rmu_ssc0000112.1_g000037 Rmu_ssc0000282.1_g000016
rosa_roxburghii	Rroxscaffold_1G00029240 Rroxscaffold_4G00291770 Rroxscaffold_4G00292190 Rroxscaffold_7G00185900 Rroxscaffold_7G00191070 Rroxscaffold_7G00191090 Rroxscaffold_7G00197330
rosa_rugosa	Rorug01G0317400
rosa_samantha	Rh1AG326400 Rh1AG326500 Rh1BG287600 Rh1BG287700 Rh1CG304400 Rh1CG304500 Rh1DG319300 Rh1DG319400
rosa_wichuraiana	Rw1G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	376
AccI	GTMKAC	1 cut(s)	360
AciI	CCGC	3 cut(s)	72, 75, 79
AclWI	GGATC	2 cut(s)	15, 470
AcuI	CTGAAG	1 cut(s)	83
AdeI	CACNNNGTG	1 cut(s)	263
AfaI	GTAC	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	245
AgsI	TTSAA	3 cut(s)	112, 207, 452
AluBI	AGCT	4 cut(s)	102, 115, 129, 179
AluI	AGCT	4 cut(s)	102, 115, 129, 179
AlwI	GGATC	2 cut(s)	15, 470
AoxI	GGCC	2 cut(s)	335, 455
ApeKI	GCWGC	2 cut(s)	13, 565
ArsI	GACNNNNNNTTYG	4 cut(s)	342, 374, 431, 463
AseI	ATTAAT	1 cut(s)	321
Asp700I	GAANNNNTTC	1 cut(s)	312
AspS9I	GGNCC	4 cut(s)	69, 86, 196, 455
AsuC2I	CCSGG	1 cut(s)	277
AsuHPI	GGTGA	1 cut(s)	375
AvaII	GGWCC	3 cut(s)	69, 86, 196
BanI	GGYRCC	1 cut(s)	376
BbsI	GAAGAC	1 cut(s)	563
BbvI	GCAGC	2 cut(s)	25, 577
BccI	CCATC	2 cut(s)	209, 388
BceAI	ACGGC	1 cut(s)	275
BcgI	CGANNNNNNTGC	2 cut(s)	461, 495
BciVI	GTATCC	1 cut(s)	538
BcnI	CCSGG	1 cut(s)	277
BfaI	CTAG	1 cut(s)	583
BfmI	CTRYAG	1 cut(s)	11
BfuI	GTATCC	1 cut(s)	538
BisI	GCNGC	3 cut(s)	14, 75, 566
BlsI	GCNGC	3 cut(s)	15, 76, 567
Bme1390I	CCNGG	1 cut(s)	277
Bme18I	GGWCC	3 cut(s)	69, 86, 196
BmgT120I	GGNCC	4 cut(s)	69, 86, 196, 455
BmiI	GGNNCC	3 cut(s)	198, 315, 378
BmrFI	CCNGG	1 cut(s)	277
BpiI	GAAGAC	1 cut(s)	563
BplI	GAGNNNNNCTC	2 cut(s)	118, 150
Bpu10I	CCTNAGC	1 cut(s)	98
BpuMI	CCSGG	1 cut(s)	277
BsaJI	CCNNGG	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	385
BsaXI	ACNNNNNCTCC	2 cut(s)	78, 108
BseDI	CCNNGG	1 cut(s)	192
BseXI	GCAGC	2 cut(s)	25, 577
BshFI	GGCC	2 cut(s)	337, 457
BshNI	GGYRCC	1 cut(s)	376
BsiSI	CCGG	3 cut(s)	23, 277, 386
BsnI	GGCC	2 cut(s)	337, 457
Bsp143I	GATC	3 cut(s)	7, 475, 579
BspACI	CCGC	3 cut(s)	72, 75, 79
BspANI	GGCC	2 cut(s)	337, 457
BspLI	GGNNCC	3 cut(s)	198, 315, 378
BspMAI	CTGCAG	1 cut(s)	15
BspPI	GGATC	2 cut(s)	15, 470
BspQI	GCTCTTC	1 cut(s)	174
BspT107I	GGYRCC	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	192
BssMI	GATC	3 cut(s)	7, 475, 579
Bst4CI	ACNGT	2 cut(s)	443, 465
Bst6I	CTCTTC	3 cut(s)	59, 174, 495
BstAPI	GCANNNNNTGC	2 cut(s)	19, 263
BstC8I	GCNNGC	3 cut(s)	79, 264, 335
BstDEI	CTNAG	1 cut(s)	98
BstKTI	GATC	3 cut(s)	10, 478, 582
BstMBI	GATC	3 cut(s)	7, 475, 579
BstMWI	GCNNNNNNNGC	6 cut(s)	19, 146, 263, 272, 334, 571
BstNSI	RCATGY	1 cut(s)	249
BstSCI	CCNGG	1 cut(s)	275
BstSFI	CTRYAG	1 cut(s)	11
BstV1I	GCAGC	2 cut(s)	25, 577
BstV2I	GAAGAC	1 cut(s)	563
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuI	GTATCC	1 cut(s)	538
BsuRI	GGCC	2 cut(s)	337, 457
BtsIMutI	CAGTG	1 cut(s)	461
Cac8I	GCNNGC	3 cut(s)	79, 264, 335
Cfr13I	GGNCC	4 cut(s)	69, 86, 196, 455
Csp6I	GTAC	1 cut(s)	346
CviAII	CATG	1 cut(s)	246
CviJI	RGCY	9 cut(s)	38, 102, 115, 129, 167, 179, 337, 457, 574
CviKI_1	RGCY	9 cut(s)	38, 102, 115, 129, 167, 179, 337, 457, 574
CviQI	GTAC	1 cut(s)	346
DdeI	CTNAG	1 cut(s)	98
DpnI	GATC	3 cut(s)	9, 477, 581
DpnII	GATC	3 cut(s)	7, 475, 579
DraIII	CACNNNGTG	1 cut(s)	263
Eam1104I	CTCTTC	3 cut(s)	59, 174, 495
EarI	CTCTTC	3 cut(s)	59, 174, 495
EciI	GGCGGA	1 cut(s)	61
Eco147I	AGGCCT	1 cut(s)	337
Eco47I	GGWCC	3 cut(s)	69, 86, 196
Eco57I	CTGAAG	1 cut(s)	83
EcoO109I	RGGNCCY	1 cut(s)	455
FaeI	CATG	1 cut(s)	249
FaiI	YATR	5 cut(s)	35, 47, 234, 236, 247
FalI	AAGNNNNNCTT	2 cut(s)	153, 185
FatI	CATG	1 cut(s)	245
FauI	CCCGC	1 cut(s)	86
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	3 cut(s)	14, 75, 566
Fsp4HI	GCNGC	3 cut(s)	14, 75, 566
FspBI	CTAG	1 cut(s)	583
GluI	GCNGC	3 cut(s)	14, 75, 566
HaeIII	GGCC	2 cut(s)	337, 457
HapII	CCGG	3 cut(s)	23, 277, 386
Hin1II	CATG	1 cut(s)	249
HincII	GTYRAC	1 cut(s)	54
HindII	GTYRAC	1 cut(s)	54
HindIII	AAGCTT	1 cut(s)	100
HinfI	GANTC	2 cut(s)	58, 415
HpaII	CCGG	3 cut(s)	23, 277, 386
HphI	GGTGA	1 cut(s)	375
Hpy166II	GTNNAC	2 cut(s)	54, 361
Hpy188I	TCNGA	2 cut(s)	63, 196
Hpy188III	TCNNGA	1 cut(s)	419
Hpy8I	GTNNAC	2 cut(s)	54, 361
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	6 cut(s)	213, 348, 446, 468, 499, 518
HpyCH4III	ACNGT	2 cut(s)	443, 465
HpyCH4V	TGCA	8 cut(s)	13, 33, 160, 257, 285, 328, 482, 497
HpyF10VI	GCNNNNNNNGC	6 cut(s)	19, 146, 263, 272, 334, 571
HpyF3I	CTNAG	1 cut(s)	98
Hsp92II	CATG	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	7, 475, 579
LguI	GCTCTTC	1 cut(s)	174
LpnPI	CCDG	8 cut(s)	36, 102, 189, 290, 319, 399, 492, 501
Lsp1109I	GCAGC	2 cut(s)	25, 577
MaeI	CTAG	1 cut(s)	583
MaeIII	GTNAC	1 cut(s)	443
MalI	GATC	3 cut(s)	9, 477, 581
MboI	GATC	3 cut(s)	7, 475, 579
MboII	GAAGA	5 cut(s)	76, 161, 202, 512, 568
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	1 cut(s)	308
MlyI	GAGTC	2 cut(s)	52, 424
MnlI	CCTC	9 cut(s)	19, 60, 104, 157, 202, 210, 289, 375, 479
MroXI	GAANNNNTTC	1 cut(s)	312
MseI	TTAA	1 cut(s)	321
MspI	CCGG	3 cut(s)	23, 277, 386
MspR9I	CCNGG	1 cut(s)	277
MwoI	GCNNNNNNNGC	6 cut(s)	19, 146, 263, 272, 334, 571
NciI	CCSGG	1 cut(s)	277
NdeII	GATC	3 cut(s)	7, 475, 579
NlaIII	CATG	1 cut(s)	249
NlaIV	GGNNCC	3 cut(s)	198, 315, 378
NspI	RCATGY	1 cut(s)	249
PceI	AGGCCT	1 cut(s)	337
PciI	ACATGT	1 cut(s)	245
PciSI	GCTCTTC	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	312
PkrI	GCNGC	3 cut(s)	15, 76, 567
PleI	GAGTC	2 cut(s)	52, 423
PpsI	GAGTC	2 cut(s)	52, 423
PscI	ACATGT	1 cut(s)	245
PshBI	ATTAAT	1 cut(s)	321
PspN4I	GGNNCC	3 cut(s)	198, 315, 378
PspPI	GGNCC	4 cut(s)	69, 86, 196, 455
PstI	CTGCAG	1 cut(s)	15
PsuI	RGATCY	1 cut(s)	7
RsaI	GTAC	1 cut(s)	347
RsaNI	GTAC	1 cut(s)	346
SapI	GCTCTTC	1 cut(s)	174
SaqAI	TTAA	1 cut(s)	321
SatI	GCNGC	3 cut(s)	14, 75, 566
Sau3AI	GATC	3 cut(s)	7, 475, 579
Sau96I	GGNCC	4 cut(s)	69, 86, 196, 455
SchI	GAGTC	2 cut(s)	52, 424
ScrFI	CCNGG	1 cut(s)	277
SetI	ASST	9 cut(s)	71, 91, 104, 117, 131, 181, 194, 230, 378
SfcI	CTRYAG	1 cut(s)	11
SinI	GGWCC	3 cut(s)	69, 86, 196
Sse9I	AATT	1 cut(s)	308
SseBI	AGGCCT	1 cut(s)	337
SsiI	CCGC	3 cut(s)	72, 75, 79
SspMI	CTAG	1 cut(s)	583
StuI	AGGCCT	1 cut(s)	337
StyD4I	CCNGG	1 cut(s)	275
TaaI	ACNGT	2 cut(s)	443, 465
TaqI	TCGA	4 cut(s)	105, 213, 438, 471
TasI	AATT	1 cut(s)	308
TauI	GCSGC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	321
Tru9I	TTAA	1 cut(s)	321
TscAI	CASTG	1 cut(s)	468
TseI	GCWGC	2 cut(s)	13, 565
TspGWI	ACGGA	1 cut(s)	99
TspRI	CASTG	1 cut(s)	468
VpaK11BI	GGWCC	3 cut(s)	69, 86, 196
VspI	ATTAAT	1 cut(s)	321
XceI	RCATGY	1 cut(s)	249
XmiI	GTMKAC	1 cut(s)	360
XmnI	GAANNNNTTC	1 cut(s)	312
XspI	CTAG	1 cut(s)	583

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.