Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004547

Physical Location & Seq

Genomic Coordinates Reverse (-)

25364797 .. 25372126

Gene Structure 7330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00185900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGACGGTGAGCCAAATTATTGGCCACAAAAATCCTCTTGCCGGAGGGTTGCATAGCCAACATCATATCGTTGACGACTCCCGAAGAGGTCCGCCGCCGCAACGCACCTGTCCTCCTAAGCTTCGACTTCAAGCTAAAGCAACCGAGCTTCACTCTCGCAACAATGGCAACCGGTATGCAAGAGGCTCTCCACTAGCTCTTACTTCTACCTCGGACCCTCCTTCAATCTTTGATGGGAAAACAAGGTTGTATATGTCTTACACATGTCCATCCGCACGCGTGCGTGGATTGCCCGAACCGCAAGGGATTGGAGAGAAGCCGAAAGTGGACTTGGCTTGCTCAACCAAATCTTCACGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

119

Amino Acids

12.95

Weight (kDa)

10.18

Isoelectric Point (pI)

65.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20610 FvH4_7g20620 FvH4_7g20620
malus_domestica	MD01G1115000.v1.1 MD07G1183000.v1.1
prunus_persica	Prupe.2G221700_v2.0.a1 Prupe.2G221700_v2.0.a1
pyrus_communis	pycom01g14390
rosa_chinensis	RchiOBHm_Chr1g0364651 RchiOBHm_Chr1g0364661
rosa_laevigata	RLG00000027469
rosa_multiflora	Rmu_sc0024218.1_g000001 Rmu_ssc0000112.1_g000036 Rmu_ssc0000112.1_g000037 Rmu_ssc0000282.1_g000016
rosa_roxburghii	Rroxscaffold_1G00029240 Rroxscaffold_4G00291770 Rroxscaffold_4G00292190 Rroxscaffold_7G00185900 Rroxscaffold_7G00191070 Rroxscaffold_7G00191090 Rroxscaffold_7G00197330
rosa_rugosa	Rorug01G0317400
rosa_samantha	Rh1AG326400 Rh1AG326500 Rh1BG287600 Rh1BG287700 Rh1CG304400 Rh1CG304500 Rh1DG319300 Rh1DG319400
rosa_wichuraiana	Rw1G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	279
AciI	CCGC	5 cut(s)	92, 95, 98, 273, 299
AcoI	YGGCCR	1 cut(s)	22
AfiI	CCNNNNNNNGG	1 cut(s)	41
AflIII	ACRYGT	2 cut(s)	263, 277
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	2 cut(s)	131, 225
AjuI	GAANNNNNNNTTGG	2 cut(s)	314, 346
AluBI	AGCT	4 cut(s)	121, 134, 148, 197
AluI	AGCT	4 cut(s)	121, 134, 148, 197
AoxI	GGCC	1 cut(s)	22
AsiGI	ACCGGT	1 cut(s)	171
AspS9I	GGNCC	2 cut(s)	89, 214
AsuHPI	GGTGA	1 cut(s)	19
AvaII	GGWCC	2 cut(s)	89, 214
BalI	TGGCCA	1 cut(s)	24
BccI	CCATC	2 cut(s)	227, 277
BfaI	CTAG	1 cut(s)	194
BisI	GCNGC	2 cut(s)	95, 98
BlsI	GCNGC	2 cut(s)	96, 99
Bme18I	GGWCC	2 cut(s)	89, 214
BmgT120I	GGNCC	2 cut(s)	89, 214
BmiI	GGNNCC	1 cut(s)	216
BplI	GAGNNNNNCTC	2 cut(s)	137, 169
Bpu10I	CCTNAGC	1 cut(s)	117
BsaJI	CCNNGG	1 cut(s)	210
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	97, 127
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse118I	RCCGGY	1 cut(s)	171
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	1 cut(s)	269
BseLI	CCNNNNNNNGG	1 cut(s)	41
Bsh1236I	CGCG	1 cut(s)	279
BshFI	GGCC	1 cut(s)	24
BshTI	ACCGGT	1 cut(s)	171
BsiSI	CCGG	2 cut(s)	42, 172
BslI	CCNNNNNNNGG	1 cut(s)	41
BsnI	GGCC	1 cut(s)	24
BspACI	CCGC	5 cut(s)	92, 95, 98, 273, 299
BspANI	GGCC	1 cut(s)	24
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	1 cut(s)	216
BsrFI	RCCGGY	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	1 cut(s)	210
Bst4CI	ACNGT	1 cut(s)	7
Bst6I	CTCTTC	1 cut(s)	79
BstC8I	GCNNGC	3 cut(s)	277, 281, 337
BstDEI	CTNAG	1 cut(s)	117
BstF5I	GGATG	1 cut(s)	269
BstFNI	CGCG	1 cut(s)	279
BstMWI	GCNNNNNNNGC	3 cut(s)	165, 289, 298
BstNSI	RCATGY	1 cut(s)	267
BstUI	CGCG	1 cut(s)	279
BstXI	CCANNNNNNTGG	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	269
Cac8I	GCNNGC	3 cut(s)	277, 281, 337
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	2 cut(s)	89, 214
CspAI	ACCGGT	1 cut(s)	171
CviAII	CATG	1 cut(s)	264
DdeI	CTNAG	1 cut(s)	117
EaeI	YGGCCR	1 cut(s)	22
Eam1104I	CTCTTC	1 cut(s)	79
EarI	CTCTTC	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	81
Eco47I	GGWCC	2 cut(s)	89, 214
FaeI	CATG	1 cut(s)	267
FaiI	YATR	6 cut(s)	54, 66, 177, 252, 254, 265
FatI	CATG	1 cut(s)	263
Fnu4HI	GCNGC	2 cut(s)	95, 98
FokI	GGATG	1 cut(s)	256
Fsp4HI	GCNGC	2 cut(s)	95, 98
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	2 cut(s)	95, 98
HaeIII	GGCC	1 cut(s)	24
HapII	CCGG	2 cut(s)	42, 172
Hin1II	CATG	1 cut(s)	267
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	119
HinfI	GANTC	1 cut(s)	77
HpaII	CCGG	2 cut(s)	42, 172
HphI	GGTGA	1 cut(s)	19
Hpy166II	GTNNAC	2 cut(s)	73, 328
Hpy188I	TCNGA	1 cut(s)	214
Hpy188III	TCNNGA	2 cut(s)	81, 354
Hpy8I	GTNNAC	2 cut(s)	73, 328
HpyAV	CCTTC	1 cut(s)	231
HpyCH4III	ACNGT	1 cut(s)	7
HpyCH4V	TGCA	2 cut(s)	52, 179
HpyF10VI	GCNNNNNNNGC	3 cut(s)	165, 289, 298
HpyF3I	CTNAG	1 cut(s)	117
Hsp92II	CATG	1 cut(s)	267
LpnPI	CCDG	3 cut(s)	55, 121, 185
MaeI	CTAG	1 cut(s)	194
MboII	GAAGA	2 cut(s)	96, 342
MlsI	TGGCCA	1 cut(s)	24
MluCI	AATT	1 cut(s)	15
MluI	ACGCGT	1 cut(s)	277
MluNI	TGGCCA	1 cut(s)	24
MlyI	GAGTC	1 cut(s)	71
MnlI	CCTC	7 cut(s)	38, 45, 80, 123, 176, 220, 228
Mox20I	TGGCCA	1 cut(s)	24
MscI	TGGCCA	1 cut(s)	24
Msp20I	TGGCCA	1 cut(s)	24
MspI	CCGG	2 cut(s)	42, 172
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	3 cut(s)	165, 289, 298
NlaIII	CATG	1 cut(s)	267
NlaIV	GGNNCC	1 cut(s)	216
NspI	RCATGY	1 cut(s)	267
PciI	ACATGT	1 cut(s)	263
PinAI	ACCGGT	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	96, 99
PleI	GAGTC	1 cut(s)	71
PpsI	GAGTC	1 cut(s)	71
PscI	ACATGT	1 cut(s)	263
PspN4I	GGNNCC	1 cut(s)	216
PspPI	GGNCC	2 cut(s)	89, 214
SatI	GCNGC	2 cut(s)	95, 98
Sau96I	GGNCC	2 cut(s)	89, 214
SchI	GAGTC	1 cut(s)	71
SetI	ASST	8 cut(s)	91, 110, 123, 136, 150, 199, 212, 248
SinI	GGWCC	2 cut(s)	89, 214
Sse9I	AATT	1 cut(s)	15
SsiI	CCGC	5 cut(s)	92, 95, 98, 273, 299
SspMI	CTAG	1 cut(s)	194
TaaI	ACNGT	1 cut(s)	7
TaqI	TCGA	1 cut(s)	124
TasI	AATT	1 cut(s)	15
TauI	GCSGC	2 cut(s)	97, 100
VpaK11BI	GGWCC	2 cut(s)	89, 214
XceI	RCATGY	1 cut(s)	267
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.