Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0004547

Physical Location & Seq

Genomic Coordinates Reverse (-)

14570338 .. 14572677

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g14390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGCGACTTTGAAAGTGAGATTGAGAAGCACTGCTGCTTTTTCACCATCACCATCTCCGAAATCTTGGCCGCGCATCTCAGATTCTCTCTCCAAGATATCAGTGACAGCCAGATTTCCAAACGCCGCCGTATTGTCTCCTCCCAAGCTTCGTCTTCGAGCTTCCCCTGGAAAGAAAACCAGAGCTTCAGTCTCTGCAACTATGGCGACTGGCGGGCAAGAGGTTCTTCCACCAGCTCTTACTTCTACATCGGACCCACCTCCAATCTTCGATGGAAATACAAGGTTGTATATATCTTACCAGTGCCCGTATGCGCAGCGTGCGTGGATTGCCCGGAATTGTAAGGGATTGGAGGAAAAGATACAGTTGGTTCCTATTGATCTGCAAGACAGGCCTGCTTGGTACAAGGAGAAAGTCTACCCTGCTAACAAGGTGCCTTCACTTGAACACAATAACGAAGTGAAAGGAGAGAGTCTTGATTTGATTAGATACATTGACAGTCACTTTGAAGGGCCTTCACTGTTCCCTGACGATCAAGCAAAGAAAGAGTTTGCAGAAGAGTTGCTGTCCTACACAGACACCTTCAATAAATCTGTGTTTTCGTCAATTAAAGAAGATGAAATCGAGGCAGCTGGTGCTTCATTTGACTATATCGAAACTGCTCTTTCCAAATTCGAAGATGGACCCTTCTTTCTTGGCAAGTTCAGTCTGGTGGATATAGCTTATGCTCCATTCCTTGAAAGATTTCAGCCTCTCTTATTGGACGTGAAGAAGTATGACATCACTGCAGGCAGACCTAAACTGGCAGCATGGATCGAGGAGATGGACAAAAATGTAGCTTACAAACAGACGCGGTGTGATCCCAAAGAGCTTGTCGAAATTTACAAGAGACGGTTCTTGGCTCAGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

304

Amino Acids

34.14

Weight (kDa)

8.73

Isoelectric Point (pI)

53.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20610 FvH4_7g20620 FvH4_7g20620
malus_domestica	MD01G1115000.v1.1 MD07G1183000.v1.1
prunus_persica	Prupe.2G221700_v2.0.a1 Prupe.2G221700_v2.0.a1
pyrus_communis	pycom01g14390
rosa_chinensis	RchiOBHm_Chr1g0364651 RchiOBHm_Chr1g0364661
rosa_laevigata	RLG00000027469
rosa_multiflora	Rmu_sc0024218.1_g000001 Rmu_ssc0000112.1_g000036 Rmu_ssc0000112.1_g000037 Rmu_ssc0000282.1_g000016
rosa_roxburghii	Rroxscaffold_1G00029240 Rroxscaffold_4G00291770 Rroxscaffold_4G00292190 Rroxscaffold_7G00185900 Rroxscaffold_7G00191070 Rroxscaffold_7G00191090 Rroxscaffold_7G00197330
rosa_rugosa	Rorug01G0317400
rosa_samantha	Rh1AG326400 Rh1AG326500 Rh1BG287600 Rh1BG287700 Rh1CG304400 Rh1CG304500 Rh1DG319300 Rh1DG319400
rosa_wichuraiana	Rw1G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	315
AccB1I	GGYRCC	1 cut(s)	433
AccI	GTMKAC	1 cut(s)	417
AccII	CGCG	2 cut(s)	73, 853
AciI	CCGC	4 cut(s)	71, 126, 213, 853
AclWI	GGATC	2 cut(s)	821, 854
AcoI	YGGCCR	1 cut(s)	68
AcsI	RAATTY	2 cut(s)	671, 879
AcuI	CTGAAG	1 cut(s)	171
AfaI	GTAC	1 cut(s)	404
AgsI	TTSAA	5 cut(s)	13, 446, 509, 586, 740
AjiI	CACGTC	1 cut(s)	766
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	8 cut(s)	148, 161, 185, 236, 632, 722, 839, 871
AluI	AGCT	8 cut(s)	148, 161, 185, 236, 632, 722, 839, 871
Alw26I	GTCTC	3 cut(s)	141, 196, 883
AlwI	GGATC	2 cut(s)	821, 854
AlwNI	CAGNNNCTG	1 cut(s)	194
AoxI	GGCC	3 cut(s)	68, 392, 512
ApeKI	GCWGC	4 cut(s)	35, 316, 629, 806
ApoI	RAATTY	2 cut(s)	671, 879
ArsI	GACNNNNNNTTYG	4 cut(s)	488, 520, 858, 890
Asp700I	GAANNNNTTC	1 cut(s)	744
AspLEI	GCGC	2 cut(s)	75, 316
AspS9I	GGNCC	3 cut(s)	253, 512, 683
AsuC2I	CCSGG	1 cut(s)	334
AsuHPI	GGTGA	2 cut(s)	36, 42
AsuII	TTCGAA	1 cut(s)	675
AvaII	GGWCC	2 cut(s)	253, 683
BaeGI	GKGCMC	1 cut(s)	308
BanI	GGYRCC	1 cut(s)	433
BbsI	GAAGAC	1 cut(s)	146
BbvI	GCAGC	4 cut(s)	22, 328, 641, 818
BccI	CCATC	5 cut(s)	55, 61, 266, 674, 817
BceAI	ACGGC	1 cut(s)	113
BciT130I	CCWGG	1 cut(s)	168
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	3 cut(s)	141, 196, 883
BfmI	CTRYAG	1 cut(s)	786
BisI	GCNGC	6 cut(s)	36, 71, 126, 317, 630, 807
BlsI	GCNGC	6 cut(s)	37, 72, 127, 318, 631, 808
Bme1390I	CCNGG	2 cut(s)	168, 334
Bme18I	GGWCC	2 cut(s)	253, 683
BmgBI	CACGTC	1 cut(s)	766
BmgT120I	GGNCC	3 cut(s)	253, 512, 683
BmiI	GGNNCC	4 cut(s)	255, 372, 435, 685
BmrFI	CCNGG	2 cut(s)	168, 334
BmsI	GCATC	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	146
Bpu14I	TTCGAA	1 cut(s)	675
BpuMI	CCSGG	1 cut(s)	334
BsaJI	CCNNGG	1 cut(s)	166
Bse1I	ACTGG	3 cut(s)	214, 301, 807
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	93
BseNI	ACTGG	3 cut(s)	214, 301, 807
BseRI	GAGGAG	2 cut(s)	129, 833
BseSI	GKGCMC	1 cut(s)	308
BseXI	GCAGC	4 cut(s)	22, 328, 641, 818
Bsh1236I	CGCG	2 cut(s)	73, 853
BshFI	GGCC	3 cut(s)	70, 394, 514
BshNI	GGYRCC	1 cut(s)	433
BsiSI	CCGG	1 cut(s)	334
BsmAI	GTCTC	3 cut(s)	141, 196, 883
BsmBI	CGTCTC	1 cut(s)	883
BsnI	GGCC	3 cut(s)	70, 394, 514
Bsp119I	TTCGAA	1 cut(s)	675
Bsp1286I	GDGCHC	1 cut(s)	308
Bsp143I	GATC	4 cut(s)	379, 532, 813, 859
BspACI	CCGC	4 cut(s)	71, 126, 213, 853
BspANI	GGCC	3 cut(s)	70, 394, 514
BspCNI	CTCAG	1 cut(s)	92
BspFNI	CGCG	2 cut(s)	73, 853
BspLI	GGNNCC	4 cut(s)	255, 372, 435, 685
BspMAI	CTGCAG	1 cut(s)	790
BspPI	GGATC	2 cut(s)	821, 854
BspT104I	TTCGAA	1 cut(s)	675
BspT107I	GGYRCC	1 cut(s)	433
BsrI	ACTGG	3 cut(s)	214, 301, 807
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	4 cut(s)	379, 532, 813, 859
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	4 cut(s)	366, 500, 522, 894
Bst6I	CTCTTC	1 cut(s)	552
BstAPI	GCANNNNNTGC	1 cut(s)	635
BstBI	TTCGAA	1 cut(s)	675
BstC8I	GCNNGC	4 cut(s)	215, 321, 396, 790
BstDEI	CTNAG	2 cut(s)	79, 903
BstFNI	CGCG	2 cut(s)	73, 853
BstHHI	GCGC	2 cut(s)	75, 316
BstKTI	GATC	4 cut(s)	382, 535, 816, 862
BstMAI	GTCTC	3 cut(s)	141, 196, 883
BstMBI	GATC	4 cut(s)	379, 532, 813, 859
BstMWI	GCNNNNNNNGC	5 cut(s)	203, 320, 329, 391, 635
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	2 cut(s)	166, 332
BstSFI	CTRYAG	1 cut(s)	786
BstSLI	GKGCMC	1 cut(s)	308
BstUI	CGCG	2 cut(s)	73, 853
BstV1I	GCAGC	4 cut(s)	22, 328, 641, 818
BstV2I	GAAGAC	1 cut(s)	146
BsuRI	GGCC	3 cut(s)	70, 394, 514
BtrI	CACGTC	1 cut(s)	766
BtsI	GCAGTG	2 cut(s)	30, 783
BtsIMutI	CAGTG	5 cut(s)	30, 108, 308, 518, 783
Cac8I	GCNNGC	4 cut(s)	215, 321, 396, 790
CaiI	CAGNNNCTG	1 cut(s)	194
CfoI	GCGC	2 cut(s)	75, 316
Cfr13I	GGNCC	3 cut(s)	253, 512, 683
CseI	GACGC	1 cut(s)	859
Csp6I	GTAC	1 cut(s)	403
CviAII	CATG	1 cut(s)	810
CviQI	GTAC	1 cut(s)	403
DdeI	CTNAG	2 cut(s)	79, 903
DpnI	GATC	4 cut(s)	381, 534, 815, 861
DpnII	GATC	4 cut(s)	379, 532, 813, 859
EaeI	YGGCCR	1 cut(s)	68
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco147I	AGGCCT	1 cut(s)	394
Eco32I	GATATC	1 cut(s)	99
Eco47I	GGWCC	2 cut(s)	253, 683
Eco57I	CTGAAG	1 cut(s)	171
EcoO109I	RGGNCCY	1 cut(s)	512
EcoRII	CCWGG	1 cut(s)	166
EcoRV	GATATC	1 cut(s)	99
Esp3I	CGTCTC	1 cut(s)	883
FaeI	CATG	1 cut(s)	813
FaiI	YATR	9 cut(s)	203, 291, 293, 312, 651, 719, 726, 777, 811
FalI	AAGNNNNNCTT	2 cut(s)	210, 242
FatI	CATG	1 cut(s)	809
FauI	CCCGC	1 cut(s)	206
FblI	GTMKAC	1 cut(s)	417
Fnu4HI	GCNGC	6 cut(s)	36, 71, 126, 317, 630, 807
Fsp4HI	GCNGC	6 cut(s)	36, 71, 126, 317, 630, 807
FspI	TGCGCA	1 cut(s)	315
GlaI	GCGC	2 cut(s)	74, 315
GluI	GCNGC	6 cut(s)	36, 71, 126, 317, 630, 807
HaeIII	GGCC	3 cut(s)	70, 394, 514
HapII	CCGG	1 cut(s)	334
HgaI	GACGC	1 cut(s)	859
HhaI	GCGC	2 cut(s)	75, 316
Hin1II	CATG	1 cut(s)	813
Hin6I	GCGC	2 cut(s)	73, 314
HinP1I	GCGC	2 cut(s)	73, 314
HindIII	AAGCTT	1 cut(s)	146
HinfI	GANTC	2 cut(s)	83, 472
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	2 cut(s)	36, 42
Hpy166II	GTNNAC	1 cut(s)	418
Hpy188I	TCNGA	4 cut(s)	60, 82, 253, 906
Hpy188III	TCNNGA	1 cut(s)	476
Hpy8I	GTNNAC	1 cut(s)	418
HpyAV	CCTTC	5 cut(s)	447, 503, 525, 592, 697
HpyCH4III	ACNGT	4 cut(s)	366, 500, 522, 894
HpyCH4IV	ACGT	1 cut(s)	765
HpyCH4V	TGCA	4 cut(s)	197, 385, 554, 788
HpyF10VI	GCNNNNNNNGC	5 cut(s)	203, 320, 329, 391, 635
HpyF3I	CTNAG	2 cut(s)	79, 903
HpySE526I	ACGT	1 cut(s)	765
Hsp92II	CATG	1 cut(s)	813
HspAI	GCGC	2 cut(s)	73, 314
Kzo9I	GATC	4 cut(s)	379, 532, 813, 859
LmnI	GCTCC	1 cut(s)	733
Lsp1109I	GCAGC	4 cut(s)	22, 328, 641, 818
LweI	GCATC	1 cut(s)	84
MaeII	ACGT	1 cut(s)	765
MaeIII	GTNAC	2 cut(s)	103, 500
MalI	GATC	4 cut(s)	381, 534, 815, 861
MboI	GATC	4 cut(s)	379, 532, 813, 859
MboII	GAAGA	7 cut(s)	146, 218, 259, 569, 626, 689, 781
MhlI	GDGCHC	1 cut(s)	308
MluCI	AATT	4 cut(s)	337, 606, 671, 879
MlyI	GAGTC	1 cut(s)	481
MnlI	CCTC	7 cut(s)	150, 214, 270, 346, 619, 762, 811
MroXI	GAANNNNTTC	1 cut(s)	744
MseI	TTAA	1 cut(s)	609
MspA1I	CMGCKG	1 cut(s)	632
MspI	CCGG	1 cut(s)	334
MspR9I	CCNGG	2 cut(s)	168, 334
MvaI	CCWGG	1 cut(s)	168
MvnI	CGCG	2 cut(s)	73, 853
MwoI	GCNNNNNNNGC	5 cut(s)	203, 320, 329, 391, 635
NciI	CCSGG	1 cut(s)	334
NdeII	GATC	4 cut(s)	379, 532, 813, 859
NlaIII	CATG	1 cut(s)	813
NlaIV	GGNNCC	4 cut(s)	255, 372, 435, 685
NmuCI	GTSAC	2 cut(s)	103, 500
NsbI	TGCGCA	1 cut(s)	315
NspV	TTCGAA	1 cut(s)	675
PceI	AGGCCT	1 cut(s)	394
PdmI	GAANNNNTTC	1 cut(s)	744
PfeI	GAWTC	1 cut(s)	83
PkrI	GCNGC	6 cut(s)	37, 72, 127, 318, 631, 808
PleI	GAGTC	1 cut(s)	480
PpsI	GAGTC	1 cut(s)	480
Psp6I	CCWGG	1 cut(s)	166
PspGI	CCWGG	1 cut(s)	166
PspN4I	GGNNCC	4 cut(s)	255, 372, 435, 685
PspPI	GGNCC	3 cut(s)	253, 512, 683
PstI	CTGCAG	1 cut(s)	790
PstNI	CAGNNNCTG	1 cut(s)	194
PvuII	CAGCTG	1 cut(s)	632
RsaI	GTAC	1 cut(s)	404
RsaNI	GTAC	1 cut(s)	403
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	6 cut(s)	36, 71, 126, 317, 630, 807
Sau3AI	GATC	4 cut(s)	379, 532, 813, 859
Sau96I	GGNCC	3 cut(s)	253, 512, 683
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	2 cut(s)	168, 334
SduI	GDGCHC	1 cut(s)	308
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	786
SfuI	TTCGAA	1 cut(s)	675
SinI	GGWCC	2 cut(s)	253, 683
Sse9I	AATT	4 cut(s)	337, 606, 671, 879
SseBI	AGGCCT	1 cut(s)	394
SsiI	CCGC	4 cut(s)	71, 126, 213, 853
StuI	AGGCCT	1 cut(s)	394
StyD4I	CCNGG	2 cut(s)	166, 332
TaaI	ACNGT	4 cut(s)	366, 500, 522, 894
TaiI	ACGT	1 cut(s)	768
TaqI	TCGA	7 cut(s)	157, 270, 624, 654, 675, 816, 876
TasI	AATT	4 cut(s)	337, 606, 671, 879
TauI	GCSGC	2 cut(s)	73, 128
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	5 cut(s)	37, 108, 308, 525, 790
TseFI	GTSAC	2 cut(s)	103, 500
TseI	GCWGC	4 cut(s)	35, 316, 629, 806
Tsp45I	GTSAC	2 cut(s)	103, 500
TspDTI	ATGAA	2 cut(s)	630, 633
TspRI	CASTG	5 cut(s)	37, 108, 308, 525, 790
VpaK11BI	GGWCC	2 cut(s)	253, 683
XapI	RAATTY	2 cut(s)	671, 879
XmiI	GTMKAC	1 cut(s)	417
XmnI	GAANNNNTTC	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.