Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004547

Physical Location & Seq

Genomic Coordinates Reverse (-)

16727332 .. 16730076

Gene Structure 2745 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g20620.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGACATTCACTATGAAAGTCGGCTTCAGAGGCATTGCACCAACTTCATCATCTCTGAAGTCTCGACCACACGTTTTAGATTCATTGTATGTAGCCAAATTCCCGAACACCACCGTACTATGTCCTCCTAAGCTTCGACTTCAAGCCAAGACAATCAGAGCTTCACTCTCTGCAACAATGGCAACTGGTGTGACGAGTGTGCAAGAGGCTCTTCCACCAGCTCTTACTTCAACCTCAGACCCGCCTTCGATCTTCGATGGGAAAACAAGGTTGTATATATCTTACACATGCCCATTTGCACAGCGTGCGTGGATTGCCCGGAACTGCAAGGGATTGGAGGAAAAGATAGAATTGGTTCCAATTAATCTGCAAGACAGGCCTTCTTGGTACAAGGAGAAAGTCTACCCTCCAAACAAGGTGCCATCACTGGAACACAATAATGAAGTCAAAGGAGAGAGTCTTGATTTGATTAGATACATCGACAGTAACTTTGAAGGGCCTTCACTATTCCCTGAAGATCCTGCAAAGAGAGAGTTTGCAGAAGAGTTGTTTACCTACACCGACTCCTTCAGCAAACCTGTGATTTCCTTTTTCAAAGGAGAAGGAACTGAAGCAGCTGCTGGTGCTGCATTTGACTATATTGAAACTGCTCTTTCCAAATTTGAAGATGGACCTTTCTTTCTTGGCCAATTCAGTCTGGTGGACATTGCTTATGCACCATTCATTGATAGATTTCAGCATTTTGCATTGGATGTCAAGAAGTATGACATCACTGCAGGGAGACCTAAACTAGCAGCATGGATTGAGGAGATGAACAAAAATGAAGGTTTCAATAAGACCAGACGTGATCCCAAAGAGCTCGTTGAAATCTACAAGAAACGCTTTTCGCCTCAGCCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

300

Amino Acids

33.72

Weight (kDa)

8.25

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	91 - 167	2.8e-21	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	96 - 162	1.7e-15	Glutathione S-transferase, N-terminal domain
GST_C_2	PF13410	205 - 269	1.2e-10	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20610 FvH4_7g20620 FvH4_7g20620
malus_domestica	MD01G1115000.v1.1 MD07G1183000.v1.1
prunus_persica	Prupe.2G221700_v2.0.a1 Prupe.2G221700_v2.0.a1
pyrus_communis	pycom01g14390
rosa_chinensis	RchiOBHm_Chr1g0364651 RchiOBHm_Chr1g0364661
rosa_laevigata	RLG00000027469
rosa_multiflora	Rmu_sc0024218.1_g000001 Rmu_ssc0000112.1_g000036 Rmu_ssc0000112.1_g000037 Rmu_ssc0000282.1_g000016
rosa_roxburghii	Rroxscaffold_1G00029240 Rroxscaffold_4G00291770 Rroxscaffold_4G00292190 Rroxscaffold_7G00185900 Rroxscaffold_7G00191070 Rroxscaffold_7G00191090 Rroxscaffold_7G00197330
rosa_rugosa	Rorug01G0317400
rosa_samantha	Rh1AG326400 Rh1AG326500 Rh1BG287600 Rh1BG287700 Rh1CG304400 Rh1CG304500 Rh1DG319300 Rh1DG319400
rosa_wichuraiana	Rw1G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	418
AccI	GTMKAC	1 cut(s)	402
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	2 cut(s)	512, 842
AcoI	YGGCCR	1 cut(s)	685
AcsI	RAATTY	2 cut(s)	98, 659
AcuI	CTGAAG	5 cut(s)	10, 77, 534, 553, 630
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	2 cut(s)	117, 389
AflIII	ACRYGT	1 cut(s)	70
AgsI	TTSAA	8 cut(s)	143, 231, 494, 595, 644, 665, 832, 866
AjiI	CACGTC	1 cut(s)	845
AluBI	AGCT	5 cut(s)	133, 161, 221, 617, 859
AluI	AGCT	5 cut(s)	133, 161, 221, 617, 859
Alw21I	GWGCWC	1 cut(s)	861
Alw26I	GTCTC	2 cut(s)	66, 775
AlwI	GGATC	2 cut(s)	512, 842
AlwNI	CAGNNNCTG	1 cut(s)	620
AoxI	GGCC	3 cut(s)	377, 497, 685
ApeKI	GCWGC	4 cut(s)	614, 617, 626, 794
ApoI	RAATTY	2 cut(s)	98, 659
ArsI	GACNNNNNNTTYG	2 cut(s)	473, 505
AseI	ATTAAT	1 cut(s)	363
Asp700I	GAANNNNTTC	1 cut(s)	354
AspS9I	GGNCC	2 cut(s)	497, 671
AsuC2I	CCSGG	1 cut(s)	319
AvaII	GGWCC	1 cut(s)	671
BalI	TGGCCA	1 cut(s)	687
BanI	GGYRCC	1 cut(s)	418
BanII	GRGCYC	1 cut(s)	861
Bbv12I	GWGCWC	1 cut(s)	861
BbvCI	CCTCAGC	1 cut(s)	891
BbvI	GCAGC	4 cut(s)	604, 613, 626, 806
BccI	CCATC	3 cut(s)	251, 430, 662
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	66, 775
BfaI	CTAG	1 cut(s)	791
BfmI	CTRYAG	1 cut(s)	774
BisI	GCNGC	4 cut(s)	615, 618, 627, 795
BlsI	GCNGC	4 cut(s)	616, 619, 628, 796
Bme1390I	CCNGG	1 cut(s)	319
Bme18I	GGWCC	1 cut(s)	671
BmgBI	CACGTC	1 cut(s)	845
BmgT120I	GGNCC	2 cut(s)	497, 671
BmiI	GGNNCC	2 cut(s)	357, 420
BmrFI	CCNGG	1 cut(s)	319
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
Bpu10I	CCTNAGC	2 cut(s)	129, 891
BpuMI	CCSGG	1 cut(s)	319
BsaI	GGTCTC	1 cut(s)	775
BsaXI	ACNNNNNCTCC	2 cut(s)	548, 578
Bse1I	ACTGG	2 cut(s)	190, 432
Bse3DI	GCAATG	2 cut(s)	33, 705
BseGI	GGATG	1 cut(s)	757
BseMI	GCAATG	2 cut(s)	33, 705
BseMII	CTCAG	1 cut(s)	249
BseNI	ACTGG	2 cut(s)	190, 432
BseRI	GAGGAG	1 cut(s)	821
BseXI	GCAGC	4 cut(s)	604, 613, 626, 806
BshFI	GGCC	3 cut(s)	379, 499, 687
BshNI	GGYRCC	1 cut(s)	418
BsiHKAI	GWGCWC	1 cut(s)	861
BsiSI	CCGG	1 cut(s)	319
BsmAI	GTCTC	2 cut(s)	66, 775
BsnI	GGCC	3 cut(s)	379, 499, 687
Bso31I	GGTCTC	1 cut(s)	775
Bsp1286I	GDGCHC	1 cut(s)	861
Bsp143I	GATC	3 cut(s)	249, 517, 847
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	3 cut(s)	379, 499, 687
BspCNI	CTCAG	1 cut(s)	248
BspLI	GGNNCC	2 cut(s)	357, 420
BspMAI	CTGCAG	1 cut(s)	778
BspPI	GGATC	2 cut(s)	512, 842
BspQI	GCTCTTC	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	418
BspTNI	GGTCTC	1 cut(s)	775
BsrDI	GCAATG	2 cut(s)	33, 705
BsrI	ACTGG	2 cut(s)	190, 432
BssMI	GATC	3 cut(s)	249, 517, 847
Bst4CI	ACNGT	2 cut(s)	115, 485
Bst6I	CTCTTC	2 cut(s)	216, 537
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	306
BstDEI	CTNAG	3 cut(s)	129, 235, 891
BstF5I	GGATG	1 cut(s)	757
BstKTI	GATC	3 cut(s)	252, 520, 850
BstMAI	GTCTC	2 cut(s)	66, 775
BstMBI	GATC	3 cut(s)	249, 517, 847
BstMWI	GCNNNNNNNGC	7 cut(s)	30, 179, 305, 314, 376, 623, 626
BstNSI	RCATGY	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	317
BstSFI	CTRYAG	1 cut(s)	774
BstV1I	GCAGC	4 cut(s)	604, 613, 626, 806
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BsuRI	GGCC	3 cut(s)	379, 499, 687
BtrI	CACGTC	1 cut(s)	845
BtsCI	GGATG	1 cut(s)	757
BtsI	GCAGTG	1 cut(s)	771
BtsIMutI	CAGTG	2 cut(s)	425, 771
Cac8I	GCNNGC	1 cut(s)	306
CaiI	CAGNNNCTG	1 cut(s)	620
Cfr13I	GGNCC	2 cut(s)	497, 671
Csp6I	GTAC	2 cut(s)	116, 388
CviAII	CATG	2 cut(s)	288, 798
CviQI	GTAC	2 cut(s)	116, 388
DdeI	CTNAG	3 cut(s)	129, 235, 891
DpnI	GATC	3 cut(s)	251, 519, 849
DpnII	GATC	3 cut(s)	249, 517, 847
DraIII	CACNNNGTG	1 cut(s)	305
EaeI	YGGCCR	1 cut(s)	685
Eam1104I	CTCTTC	2 cut(s)	216, 537
EarI	CTCTTC	2 cut(s)	216, 537
Ecl136II	GAGCTC	1 cut(s)	859
Eco147I	AGGCCT	1 cut(s)	379
Eco24I	GRGCYC	1 cut(s)	861
Eco31I	GGTCTC	1 cut(s)	775
Eco47I	GGWCC	1 cut(s)	671
Eco53kI	GAGCTC	1 cut(s)	859
Eco57I	CTGAAG	5 cut(s)	10, 77, 534, 553, 630
EcoICRI	GAGCTC	1 cut(s)	859
EcoO109I	RGGNCCY	1 cut(s)	497
EcoT38I	GRGCYC	1 cut(s)	861
FaeI	CATG	2 cut(s)	291, 801
FalI	AAGNNNNNCTT	4 cut(s)	195, 227, 866, 898
FatI	CATG	2 cut(s)	287, 797
FauI	CCCGC	1 cut(s)	249
FblI	GTMKAC	1 cut(s)	402
Fnu4HI	GCNGC	4 cut(s)	615, 618, 627, 795
FokI	GGATG	1 cut(s)	764
FriOI	GRGCYC	1 cut(s)	861
Fsp4HI	GCNGC	4 cut(s)	615, 618, 627, 795
FspBI	CTAG	1 cut(s)	791
GluI	GCNGC	4 cut(s)	615, 618, 627, 795
HaeIII	GGCC	3 cut(s)	379, 499, 687
HapII	CCGG	1 cut(s)	319
Hin1II	CATG	2 cut(s)	291, 801
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	3 cut(s)	80, 457, 563
HpaII	CCGG	1 cut(s)	319
Hpy166II	GTNNAC	3 cut(s)	403, 552, 703
Hpy188I	TCNGA	4 cut(s)	29, 57, 158, 238
Hpy188III	TCNNGA	4 cut(s)	63, 103, 461, 757
Hpy8I	GTNNAC	3 cut(s)	403, 552, 703
HpyAV	CCTTC	7 cut(s)	255, 390, 488, 510, 577, 596, 818
HpyCH4III	ACNGT	2 cut(s)	115, 485
HpyCH4IV	ACGT	2 cut(s)	72, 844
HpyF10VI	GCNNNNNNNGC	7 cut(s)	30, 179, 305, 314, 376, 623, 626
HpyF3I	CTNAG	3 cut(s)	129, 235, 891
HpySE526I	ACGT	2 cut(s)	72, 844
Hsp92II	CATG	2 cut(s)	291, 801
Kzo9I	GATC	3 cut(s)	249, 517, 847
LguI	GCTCTTC	1 cut(s)	216
Lsp1109I	GCAGC	4 cut(s)	604, 613, 626, 806
MaeI	CTAG	1 cut(s)	791
MaeII	ACGT	2 cut(s)	72, 844
MaeIII	GTNAC	2 cut(s)	190, 485
MalI	GATC	3 cut(s)	251, 519, 849
MboI	GATC	3 cut(s)	249, 517, 847
MboII	GAAGA	5 cut(s)	203, 244, 527, 554, 677
MflI	RGATCY	1 cut(s)	517
MhlI	GDGCHC	1 cut(s)	861
MlsI	TGGCCA	1 cut(s)	687
MluCI	AATT	5 cut(s)	98, 350, 360, 659, 689
MluNI	TGGCCA	1 cut(s)	687
MlyI	GAGTC	2 cut(s)	466, 557
MnlI	CCTC	8 cut(s)	23, 135, 199, 244, 331, 417, 799, 900
Mox20I	TGGCCA	1 cut(s)	687
MroXI	GAANNNNTTC	1 cut(s)	354
MscI	TGGCCA	1 cut(s)	687
MseI	TTAA	1 cut(s)	363
MslI	CAYNNNNRTG	1 cut(s)	438
Msp20I	TGGCCA	1 cut(s)	687
MspA1I	CMGCKG	1 cut(s)	617
MspI	CCGG	1 cut(s)	319
MspR9I	CCNGG	1 cut(s)	319
MwoI	GCNNNNNNNGC	7 cut(s)	30, 179, 305, 314, 376, 623, 626
NciI	CCSGG	1 cut(s)	319
NdeII	GATC	3 cut(s)	249, 517, 847
NlaIII	CATG	2 cut(s)	291, 801
NlaIV	GGNNCC	2 cut(s)	357, 420
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	291
PceI	AGGCCT	1 cut(s)	379
PciSI	GCTCTTC	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	354
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	4 cut(s)	616, 619, 628, 796
PleI	GAGTC	2 cut(s)	465, 557
PpsI	GAGTC	2 cut(s)	465, 557
PshBI	ATTAAT	1 cut(s)	363
Psp124BI	GAGCTC	1 cut(s)	861
PspN4I	GGNNCC	2 cut(s)	357, 420
PspPI	GGNCC	2 cut(s)	497, 671
PstI	CTGCAG	1 cut(s)	778
PstNI	CAGNNNCTG	1 cut(s)	620
PsuI	RGATCY	1 cut(s)	517
PvuII	CAGCTG	1 cut(s)	617
RsaI	GTAC	2 cut(s)	117, 389
RsaNI	GTAC	2 cut(s)	116, 388
RseI	CAYNNNNRTG	1 cut(s)	438
SacI	GAGCTC	1 cut(s)	861
SapI	GCTCTTC	1 cut(s)	216
SaqAI	TTAA	1 cut(s)	363
SatI	GCNGC	4 cut(s)	615, 618, 627, 795
Sau3AI	GATC	3 cut(s)	249, 517, 847
Sau96I	GGNCC	2 cut(s)	497, 671
SchI	GAGTC	2 cut(s)	466, 557
ScrFI	CCNGG	1 cut(s)	319
SduI	GDGCHC	1 cut(s)	861
SfcI	CTRYAG	1 cut(s)	774
SinI	GGWCC	1 cut(s)	671
SmiMI	CAYNNNNRTG	1 cut(s)	438
Sse9I	AATT	5 cut(s)	98, 350, 360, 659, 689
SseBI	AGGCCT	1 cut(s)	379
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	1 cut(s)	791
SstI	GAGCTC	1 cut(s)	861
StuI	AGGCCT	1 cut(s)	379
StyD4I	CCNGG	1 cut(s)	317
TaaI	ACNGT	2 cut(s)	115, 485
TaiI	ACGT	2 cut(s)	75, 847
TaqI	TCGA	5 cut(s)	64, 136, 248, 255, 480
TasI	AATT	5 cut(s)	98, 350, 360, 659, 689
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	363
Tru9I	TTAA	1 cut(s)	363
TscAI	CASTG	2 cut(s)	432, 778
TseFI	GTSAC	1 cut(s)	190
TseI	GCWGC	4 cut(s)	614, 617, 626, 794
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	7 cut(s)	29, 36, 72, 456, 712, 827, 837
TspRI	CASTG	2 cut(s)	432, 778
VpaK11BI	GGWCC	1 cut(s)	671
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	2 cut(s)	98, 659
XceI	RCATGY	1 cut(s)	291
XmiI	GTMKAC	1 cut(s)	402
XmnI	GAANNNNTTC	1 cut(s)	354
XspI	CTAG	1 cut(s)	791

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.