Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000112.1

Orthogroup ID

OG0004547

Physical Location & Seq

Genomic Coordinates Forward (+)

181104 .. 183431

Gene Structure 2328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000112.1_g000037.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

atgactagtttgaaagtgagtttcagaggcactgctcttccttcttcatcacctcaaacttcccggcatcacttttcagattcagtcactttttctctccccaagaaatcagtgatagccaagtttccaaactccactatactatgtcatcctaagcttcgtcttcaagcttcttttgggaagaagaccagagcttcagtctctgcaatagtggcaactggtgtgcaagaggttcttcaaccagctcttactaacagctcagtcccacctacactctttgatgggaatacaagctttgcaagtattagaattcttaatgcttgcttgaatgtggaaaaatcttacaatgttgactataatgttacttttgttattctggttttcgctgtgaggtcaaaccttttaatacttgttgattactgggaacagggattggaggagaagatagaattggttcctcttgatctgctagacaggccttcttggtacaaagaaaaagtgaactctactaacaaggtgccatcactggaacacaataacgaaatcaaagtagagagtcttgatttgattaggtatatcgacagtaactttgaagggccttcactgttccctggtgatcctgcaaggagagaatttgcagaagagttgttttcctacaccgactccttcaacacatctgtgttttcgtttttcaaaggagatggaactgaggcagctgccggtgctgcatttgactacattgaaactgctctctcgaaatttgaagatggacctttctttcttggccaattcagtctggtggatatagcttatgctccattcattgaaagatttcaaccttttgcattggatgtgaagaagcttgacataactgcaggcagacctagactggcagcatggattgaggagatggacaaaaacgatgcttacaatagaacccgacgtgatcctaaagtgcacgttgaaatctacaagaaacgctttccggtaatttgttcttctgcaagttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

336

Amino Acids

37.68

Weight (kDa)

6.26

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20610 FvH4_7g20620 FvH4_7g20620
malus_domestica	MD01G1115000.v1.1 MD07G1183000.v1.1
prunus_persica	Prupe.2G221700_v2.0.a1 Prupe.2G221700_v2.0.a1
pyrus_communis	pycom01g14390
rosa_chinensis	RchiOBHm_Chr1g0364651 RchiOBHm_Chr1g0364661
rosa_laevigata	RLG00000027469
rosa_multiflora	Rmu_sc0024218.1_g000001 Rmu_ssc0000112.1_g000036 Rmu_ssc0000112.1_g000037 Rmu_ssc0000282.1_g000016
rosa_roxburghii	Rroxscaffold_1G00029240 Rroxscaffold_4G00291770 Rroxscaffold_4G00292190 Rroxscaffold_7G00185900 Rroxscaffold_7G00191070 Rroxscaffold_7G00191090 Rroxscaffold_7G00197330
rosa_rugosa	Rorug01G0317400
rosa_samantha	Rh1AG326400 Rh1AG326500 Rh1BG287600 Rh1BG287700 Rh1CG304400 Rh1CG304500 Rh1DG319300 Rh1DG319400
rosa_wichuraiana	Rw1G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	517
AclWI	GGATC	2 cut(s)	611, 941
AcoI	YGGCCR	1 cut(s)	784
AcsI	RAATTY	3 cut(s)	309, 632, 758
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	1 cut(s)	488
AhlI	ACTAGT	1 cut(s)	5
AjiI	CACGTC	1 cut(s)	944
AjnI	CCWGG	1 cut(s)	610
AjuI	GAANNNNNNNTTGG	2 cut(s)	434, 466
AleI	CACNNNNGTG	1 cut(s)	677
AluBI	AGCT	9 cut(s)	157, 170, 194, 245, 258, 294, 716, 809, 862
AluI	AGCT	9 cut(s)	157, 170, 194, 245, 258, 294, 716, 809, 862
Alw21I	GWGCWC	1 cut(s)	960
Alw26I	GTCTC	1 cut(s)	205
Alw44I	GTGCAC	1 cut(s)	956
AlwI	GGATC	2 cut(s)	611, 941
AlwNI	CAGNNNCTG	1 cut(s)	203
AoxI	GGCC	3 cut(s)	476, 596, 784
ApaLI	GTGCAC	1 cut(s)	956
ApeKI	GCWGC	4 cut(s)	713, 716, 725, 893
ApoI	RAATTY	3 cut(s)	309, 632, 758
ArsI	GACNNNNNNTTYG	2 cut(s)	572, 604
Asp700I	GAANNNNTTC	2 cut(s)	453, 831
AspS9I	GGNCC	2 cut(s)	596, 770
AsuC2I	CCSGG	1 cut(s)	64
AsuHPI	GGTGA	2 cut(s)	42, 626
AvaII	GGWCC	1 cut(s)	770
BaeGI	GKGCMC	1 cut(s)	960
BalI	TGGCCA	1 cut(s)	786
BanI	GGYRCC	1 cut(s)	517
BbsI	GAAGAC	2 cut(s)	155, 191
Bbv12I	GWGCWC	1 cut(s)	960
BbvI	GCAGC	4 cut(s)	703, 712, 725, 905
BccI	CCATC	5 cut(s)	275, 529, 695, 761, 904
BciT130I	CCWGG	1 cut(s)	612
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	1 cut(s)	205
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	3 cut(s)	6, 470, 885
BfmI	CTRYAG	1 cut(s)	873
BisI	GCNGC	4 cut(s)	714, 717, 726, 894
BlsI	GCNGC	4 cut(s)	715, 718, 727, 895
Bme1390I	CCNGG	2 cut(s)	64, 612
Bme18I	GGWCC	1 cut(s)	770
BmgBI	CACGTC	1 cut(s)	944
BmgT120I	GGNCC	2 cut(s)	596, 770
BmiI	GGNNCC	2 cut(s)	456, 519
BmrFI	CCNGG	2 cut(s)	64, 612
BmrI	ACTGGG	1 cut(s)	430
BmsI	GCATC	2 cut(s)	76, 913
BmuI	ACTGGG	1 cut(s)	430
BpiI	GAAGAC	2 cut(s)	155, 191
Bpu10I	CCTNAGC	1 cut(s)	153
BpuMI	CCSGG	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	610
BsaWI	WCCGGW	1 cut(s)	985
BsaXI	ACNNNNNCTCC	2 cut(s)	647, 677
Bse118I	RCCGGY	1 cut(s)	719
Bse1I	ACTGG	4 cut(s)	223, 425, 531, 894
BseBI	CCWGG	1 cut(s)	612
BseDI	CCNNGG	1 cut(s)	610
BseGI	GGATG	2 cut(s)	148, 856
BseMII	CTCAG	2 cut(s)	273, 699
BseNI	ACTGG	4 cut(s)	223, 425, 531, 894
BseRI	GAGGAG	2 cut(s)	452, 920
BseSI	GKGCMC	1 cut(s)	960
BseXI	GCAGC	4 cut(s)	703, 712, 725, 905
BshFI	GGCC	3 cut(s)	478, 598, 786
BshNI	GGYRCC	1 cut(s)	517
BsiHKAI	GWGCWC	1 cut(s)	960
BsiSI	CCGG	3 cut(s)	64, 720, 986
BslFI	GGGAC	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	3 cut(s)	478, 598, 786
Bsp1286I	GDGCHC	1 cut(s)	960
Bsp143I	GATC	3 cut(s)	463, 616, 946
BspANI	GGCC	3 cut(s)	478, 598, 786
BspCNI	CTCAG	2 cut(s)	272, 700
BspLI	GGNNCC	2 cut(s)	456, 519
BspMAI	CTGCAG	1 cut(s)	877
BspPI	GGATC	2 cut(s)	611, 941
BspQI	GCTCTTC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	517
BsrFI	RCCGGY	1 cut(s)	719
BsrI	ACTGG	4 cut(s)	223, 425, 531, 894
BssAI	RCCGGY	1 cut(s)	719
BssECI	CCNNGG	1 cut(s)	610
BssMI	GATC	3 cut(s)	463, 616, 946
Bst2UI	CCWGG	1 cut(s)	612
Bst4CI	ACNGT	2 cut(s)	584, 606
Bst6I	CTCTTC	2 cut(s)	42, 636
BstC8I	GCNNGC	2 cut(s)	322, 877
BstDEI	CTNAG	3 cut(s)	153, 259, 708
BstF5I	GGATG	2 cut(s)	148, 856
BstKTI	GATC	3 cut(s)	466, 619, 949
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	3 cut(s)	463, 616, 946
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 475, 722, 725
BstNI	CCWGG	1 cut(s)	612
BstSCI	CCNGG	2 cut(s)	62, 610
BstSFI	CTRYAG	1 cut(s)	873
BstSLI	GKGCMC	1 cut(s)	960
BstV1I	GCAGC	4 cut(s)	703, 712, 725, 905
BstV2I	GAAGAC	2 cut(s)	155, 191
BsuRI	GGCC	3 cut(s)	478, 598, 786
BtrI	CACGTC	1 cut(s)	944
BtsCI	GGATG	2 cut(s)	148, 856
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	4 cut(s)	30, 117, 524, 602
Cac8I	GCNNGC	2 cut(s)	322, 877
CaiI	CAGNNNCTG	1 cut(s)	203
Cfr10I	RCCGGY	1 cut(s)	719
Cfr13I	GGNCC	2 cut(s)	596, 770
Csp6I	GTAC	1 cut(s)	487
CviAII	CATG	1 cut(s)	897
CviQI	GTAC	1 cut(s)	487
DdeI	CTNAG	3 cut(s)	153, 259, 708
DpnI	GATC	3 cut(s)	465, 618, 948
DpnII	GATC	3 cut(s)	463, 616, 946
EaeI	YGGCCR	1 cut(s)	784
Eam1104I	CTCTTC	2 cut(s)	42, 636
EarI	CTCTTC	2 cut(s)	42, 636
Eco147I	AGGCCT	1 cut(s)	478
Eco47I	GGWCC	1 cut(s)	770
Eco57I	CTGAAG	1 cut(s)	180
EcoO109I	RGGNCCY	1 cut(s)	596
EcoRI	GAATTC	1 cut(s)	309
EcoRII	CCWGG	1 cut(s)	610
FaeI	CATG	1 cut(s)	900
FaiI	YATR	8 cut(s)	140, 145, 357, 576, 806, 813, 869, 898
FalI	AAGNNNNNCTT	4 cut(s)	219, 251, 965, 997
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	1 cut(s)	896
Fnu4HI	GCNGC	4 cut(s)	714, 717, 726, 894
FokI	GGATG	2 cut(s)	135, 863
Fsp4HI	GCNGC	4 cut(s)	714, 717, 726, 894
FspBI	CTAG	3 cut(s)	6, 470, 885
GluI	GCNGC	4 cut(s)	714, 717, 726, 894
HaeIII	GGCC	3 cut(s)	478, 598, 786
HapII	CCGG	3 cut(s)	64, 720, 986
Hin1II	CATG	1 cut(s)	900
HincII	GTYRAC	1 cut(s)	352
HindII	GTYRAC	1 cut(s)	352
HindIII	AAGCTT	4 cut(s)	155, 168, 292, 860
HinfI	GANTC	3 cut(s)	80, 556, 662
HpaII	CCGG	3 cut(s)	64, 720, 986
HphI	GGTGA	2 cut(s)	42, 626
Hpy166II	GTNNAC	3 cut(s)	352, 502, 958
Hpy188I	TCNGA	2 cut(s)	26, 79
Hpy188III	TCNNGA	3 cut(s)	461, 560, 754
Hpy8I	GTNNAC	3 cut(s)	352, 502, 958
Hpy99I	CGWCG	1 cut(s)	945
HpyAV	CCTTC	5 cut(s)	51, 489, 587, 609, 676
HpyCH4III	ACNGT	2 cut(s)	584, 606
HpyCH4IV	ACGT	2 cut(s)	943, 960
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 475, 722, 725
HpyF3I	CTNAG	3 cut(s)	153, 259, 708
HpySE526I	ACGT	2 cut(s)	943, 960
Hsp92II	CATG	1 cut(s)	900
Kzo9I	GATC	3 cut(s)	463, 616, 946
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	820
Lsp1109I	GCAGC	4 cut(s)	703, 712, 725, 905
LweI	GCATC	2 cut(s)	76, 913
MaeI	CTAG	3 cut(s)	6, 470, 885
MaeII	ACGT	2 cut(s)	943, 960
MaeIII	GTNAC	3 cut(s)	85, 361, 584
MalI	GATC	3 cut(s)	465, 618, 948
MboI	GATC	3 cut(s)	463, 616, 946
MhlI	GDGCHC	1 cut(s)	960
MlsI	TGGCCA	1 cut(s)	786
MluCI	AATT	6 cut(s)	309, 449, 632, 758, 788, 990
MluNI	TGGCCA	1 cut(s)	786
MlyI	GAGTC	2 cut(s)	565, 656
MnlI	CCTC	8 cut(s)	20, 63, 223, 384, 430, 468, 703, 898
Mox20I	TGGCCA	1 cut(s)	786
MroXI	GAANNNNTTC	2 cut(s)	453, 831
MscI	TGGCCA	1 cut(s)	786
MseI	TTAA	2 cut(s)	315, 404
MslI	CAYNNNNRTG	1 cut(s)	677
Msp20I	TGGCCA	1 cut(s)	786
MspA1I	CMGCKG	1 cut(s)	716
MspI	CCGG	3 cut(s)	64, 720, 986
MspR9I	CCNGG	2 cut(s)	64, 612
MvaI	CCWGG	1 cut(s)	612
MwoI	GCNNNNNNNGC	4 cut(s)	212, 475, 722, 725
NciI	CCSGG	1 cut(s)	64
NdeII	GATC	3 cut(s)	463, 616, 946
NlaIII	CATG	1 cut(s)	900
NlaIV	GGNNCC	2 cut(s)	456, 519
NmuCI	GTSAC	1 cut(s)	85
OliI	CACNNNNGTG	1 cut(s)	677
PceI	AGGCCT	1 cut(s)	478
PciSI	GCTCTTC	1 cut(s)	42
PdmI	GAANNNNTTC	2 cut(s)	453, 831
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	4 cut(s)	715, 718, 727, 895
PleI	GAGTC	2 cut(s)	564, 656
PpsI	GAGTC	2 cut(s)	564, 656
Psp6I	CCWGG	1 cut(s)	610
PspGI	CCWGG	1 cut(s)	610
PspN4I	GGNNCC	2 cut(s)	456, 519
PspPI	GGNCC	2 cut(s)	596, 770
PstI	CTGCAG	1 cut(s)	877
PstNI	CAGNNNCTG	1 cut(s)	203
PvuII	CAGCTG	1 cut(s)	716
RsaI	GTAC	1 cut(s)	488
RsaNI	GTAC	1 cut(s)	487
RseI	CAYNNNNRTG	1 cut(s)	677
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	315, 404
SatI	GCNGC	4 cut(s)	714, 717, 726, 894
Sau3AI	GATC	3 cut(s)	463, 616, 946
Sau96I	GGNCC	2 cut(s)	596, 770
SchI	GAGTC	2 cut(s)	565, 656
ScrFI	CCNGG	2 cut(s)	64, 612
SduI	GDGCHC	1 cut(s)	960
SfaNI	GCATC	2 cut(s)	76, 913
SfcI	CTRYAG	1 cut(s)	873
SinI	GGWCC	1 cut(s)	770
SmiMI	CAYNNNNRTG	1 cut(s)	677
SpeI	ACTAGT	1 cut(s)	5
Sse9I	AATT	6 cut(s)	309, 449, 632, 758, 788, 990
SseBI	AGGCCT	1 cut(s)	478
SspMI	CTAG	3 cut(s)	6, 470, 885
StuI	AGGCCT	1 cut(s)	478
StyD4I	CCNGG	2 cut(s)	62, 610
TaaI	ACNGT	2 cut(s)	584, 606
TaiI	ACGT	2 cut(s)	946, 963
TaqI	TCGA	2 cut(s)	579, 755
TasI	AATT	6 cut(s)	309, 449, 632, 758, 788, 990
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	2 cut(s)	315, 404
Tru9I	TTAA	2 cut(s)	315, 404
TscAI	CASTG	4 cut(s)	37, 117, 531, 609
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	4 cut(s)	713, 716, 725, 893
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	2 cut(s)	36, 811
TspRI	CASTG	4 cut(s)	37, 117, 531, 609
VneI	GTGCAC	1 cut(s)	956
VpaK11BI	GGWCC	1 cut(s)	770
XapI	RAATTY	3 cut(s)	309, 632, 758
XmnI	GAANNNNTTC	2 cut(s)	453, 831
XspI	CTAG	3 cut(s)	6, 470, 885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.