Rroxscaffold_1G00029240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0004547
Physical Location & Seq
Reverse (-)
37800789 .. 37802810
2022 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00029240.1

Sequence Viewer

Length: 468 bp
ATGGCAAATAGTTTAAGCCATTCTCAATTTGCGAGAAAATCACCGTCTTCGGCCACCGACAAGGATTTCCTTTTCTCAAGGAAGGTATTCGATCCCCGCTCTCTATCTCTCTCTCTTTTCTCTCGTTTCGTCCTCTTCCTCTCCCCGTCACCGACCTTGGAGCCGAAGAAGGGAGAAAGAGGCCTGCACGTTGATGGATCTGCAGCAGCTGCCGGAGGGTTGCATAGCCAACATCATATCGTTGACGACTCCCGAAAGAGGTCCCGCCCGCCGCAAATGCACTGTCCTCCTAAGCTTCGACTTCAAGCTAAAGCAACCGAGCTTCACTCTCGCAACAATGGCAACTGGTGTGCAAGAGGCTCTCCCACTAGCTCTTACTTCTACCTCGACCCTCCTTCAATCTTTGATGGGAGAAACACAGGATGTGCCATCGTTGTGCTAAAGTCGTTGGTGAGACTTCTTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

155

Amino Acids

17.16

Weight (kDa)

10.38

Isoelectric Point (pI)

61.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 99
AciI CCGC 4 cut(s) 97, 265, 269, 272
AclWI GGATC 2 cut(s) 86, 205
AcoI YGGCCR 1 cut(s) 51
AfiI CCNNNNNNNGG 2 cut(s) 170, 258
AgsI TTSAA 2 cut(s) 305, 399
AluBI AGCT 5 cut(s) 209, 295, 308, 322, 372
AluI AGCT 5 cut(s) 209, 295, 308, 322, 372
Alw26I GTCTC 1 cut(s) 448
AlwI GGATC 2 cut(s) 86, 205
AlwNI CAGNNNCTG 1 cut(s) 209
AoxI GGCC 2 cut(s) 51, 181
ApeKI GCWGC 3 cut(s) 203, 206, 209
ArsI GACNNNNNNTTYG 2 cut(s) 268, 300
Asp700I GAANNNNTTC 1 cut(s) 86
AspS9I GGNCC 1 cut(s) 261
AsuHPI GGTGA 3 cut(s) 33, 141, 463
AvaII GGWCC 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 39
BbvI GCAGC 3 cut(s) 196, 215, 218
BccI CCATC 3 cut(s) 188, 401, 437
BcoDI GTCTC 1 cut(s) 448
BfaI CTAG 1 cut(s) 369
BfmI CTRYAG 1 cut(s) 201
BisI GCNGC 4 cut(s) 204, 207, 210, 272
BlsI GCNGC 4 cut(s) 205, 208, 211, 273
Bme18I GGWCC 1 cut(s) 261
BmgT120I GGNCC 1 cut(s) 261
BmiI GGNNCC 2 cut(s) 162, 263
BpiI GAAGAC 1 cut(s) 39
BplI GAGNNNNNCTC 2 cut(s) 311, 343
Bpu10I CCTNAGC 1 cut(s) 291
BpuEI CTTGAG 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 156
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 258
Bse1I ACTGG 1 cut(s) 350
BseDI CCNNGG 1 cut(s) 156
BseGI GGATG 1 cut(s) 428
BseLI CCNNNNNNNGG 2 cut(s) 170, 258
BseNI ACTGG 1 cut(s) 350
BseXI GCAGC 3 cut(s) 196, 215, 218
BsgI GTGCAG 1 cut(s) 170
BshFI GGCC 2 cut(s) 53, 183
BsiSI CCGG 1 cut(s) 213
BslFI GGGAC 1 cut(s) 247
BslI CCNNNNNNNGG 2 cut(s) 170, 258
BsmAI GTCTC 1 cut(s) 448
BsmFI GGGAC 1 cut(s) 247
BsnI GGCC 2 cut(s) 53, 183
Bsp143I GATC 2 cut(s) 91, 197
BspACI CCGC 4 cut(s) 97, 265, 269, 272
BspANI GGCC 2 cut(s) 53, 183
BspLI GGNNCC 2 cut(s) 162, 263
BspMAI CTGCAG 1 cut(s) 205
BspPI GGATC 2 cut(s) 86, 205
BsrBI CCGCTC 1 cut(s) 99
BsrI ACTGG 1 cut(s) 350
BssECI CCNNGG 1 cut(s) 156
BssMI GATC 2 cut(s) 91, 197
BssT1I CCWWGG 1 cut(s) 156
Bst4CI ACNGT 2 cut(s) 45, 284
Bst6I CTCTTC 1 cut(s) 140
BstAPI GCANNNNNTGC 1 cut(s) 209
BstC8I GCNNGC 2 cut(s) 185, 269
BstDEI CTNAG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 428
BstKTI GATC 2 cut(s) 94, 200
BstMAI GTCTC 1 cut(s) 448
BstMBI GATC 2 cut(s) 91, 197
BstMWI GCNNNNNNNGC 3 cut(s) 209, 277, 339
BstSFI CTRYAG 1 cut(s) 201
BstV1I GCAGC 3 cut(s) 196, 215, 218
BstV2I GAAGAC 1 cut(s) 39
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 2 cut(s) 53, 183
BtsCI GGATG 1 cut(s) 428
BtsIMutI CAGTG 1 cut(s) 280
Cac8I GCNNGC 2 cut(s) 185, 269
CaiI CAGNNNCTG 1 cut(s) 209
Cfr13I GGNCC 1 cut(s) 261
DdeI CTNAG 1 cut(s) 291
DpnI GATC 2 cut(s) 93, 199
DpnII GATC 2 cut(s) 91, 197
EaeI YGGCCR 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 140
EarI CTCTTC 1 cut(s) 140
Eco130I CCWWGG 1 cut(s) 156
Eco147I AGGCCT 1 cut(s) 183
Eco47I GGWCC 1 cut(s) 261
EcoO109I RGGNCCY 1 cut(s) 261
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaiI YATR 2 cut(s) 225, 237
FaqI GGGAC 1 cut(s) 247
FauI CCCGC 3 cut(s) 104, 272, 276
Fnu4HI GCNGC 4 cut(s) 204, 207, 210, 272
FokI GGATG 1 cut(s) 435
Fsp4HI GCNGC 4 cut(s) 204, 207, 210, 272
FspBI CTAG 1 cut(s) 369
GluI GCNGC 4 cut(s) 204, 207, 210, 272
HaeIII GGCC 2 cut(s) 53, 183
HapII CCGG 1 cut(s) 213
HincII GTYRAC 1 cut(s) 244
HindII GTYRAC 1 cut(s) 244
HindIII AAGCTT 1 cut(s) 293
HinfI GANTC 1 cut(s) 248
HpaII CCGG 1 cut(s) 213
HphI GGTGA 3 cut(s) 33, 141, 463
Hpy166II GTNNAC 1 cut(s) 244
Hpy188III TCNNGA 1 cut(s) 252
Hpy8I GTNNAC 1 cut(s) 244
HpyAV CCTTC 3 cut(s) 76, 163, 405
HpyCH4III ACNGT 2 cut(s) 45, 284
HpyCH4IV ACGT 1 cut(s) 189
HpyCH4V TGCA 5 cut(s) 187, 203, 223, 280, 353
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 277, 339
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 1 cut(s) 189
Kzo9I GATC 2 cut(s) 91, 197
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 4 cut(s) 197, 226, 331, 405
Lsp1109I GCAGC 3 cut(s) 196, 215, 218
MaeI CTAG 1 cut(s) 369
MaeII ACGT 1 cut(s) 189
MaeIII GTNAC 1 cut(s) 147
MalI GATC 2 cut(s) 93, 199
MbiI CCGCTC 1 cut(s) 99
MboI GATC 2 cut(s) 91, 197
MboII GAAGA 4 cut(s) 39, 127, 178, 452
MflI RGATCY 1 cut(s) 197
MluCI AATT 1 cut(s) 26
MlyI GAGTC 1 cut(s) 242
MnlI CCTC 9 cut(s) 143, 149, 173, 209, 252, 297, 350, 395, 402
MroXI GAANNNNTTC 1 cut(s) 86
MseI TTAA 1 cut(s) 14
MslI CAYNNNNRTG 2 cut(s) 192, 434
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 1 cut(s) 213
MwoI GCNNNNNNNGC 3 cut(s) 209, 277, 339
NdeII GATC 2 cut(s) 91, 197
NlaIV GGNNCC 2 cut(s) 162, 263
NmuCI GTSAC 1 cut(s) 147
PceI AGGCCT 1 cut(s) 183
PdmI GAANNNNTTC 1 cut(s) 86
PkrI GCNGC 4 cut(s) 205, 208, 211, 273
PleI GAGTC 1 cut(s) 242
PpsI GAGTC 1 cut(s) 242
PpuMI RGGWCCY 1 cut(s) 261
Psp5II RGGWCCY 1 cut(s) 261
PspN4I GGNNCC 2 cut(s) 162, 263
PspPI GGNCC 1 cut(s) 261
PspPPI RGGWCCY 1 cut(s) 261
PstI CTGCAG 1 cut(s) 205
PstNI CAGNNNCTG 1 cut(s) 209
PsuI RGATCY 1 cut(s) 197
PvuII CAGCTG 1 cut(s) 209
RseI CAYNNNNRTG 2 cut(s) 192, 434
SaqAI TTAA 1 cut(s) 14
SatI GCNGC 4 cut(s) 204, 207, 210, 272
Sau3AI GATC 2 cut(s) 91, 197
Sau96I GGNCC 1 cut(s) 261
SchI GAGTC 1 cut(s) 242
SfcI CTRYAG 1 cut(s) 201
SinI GGWCC 1 cut(s) 261
SmiMI CAYNNNNRTG 2 cut(s) 192, 434
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
Sse9I AATT 1 cut(s) 26
SseBI AGGCCT 1 cut(s) 183
SsiI CCGC 4 cut(s) 97, 265, 269, 272
SspMI CTAG 1 cut(s) 369
StuI AGGCCT 1 cut(s) 183
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 2 cut(s) 45, 284
TaiI ACGT 1 cut(s) 192
TaqI TCGA 4 cut(s) 90, 298, 387, 463
TasI AATT 1 cut(s) 26
TauI GCSGC 1 cut(s) 274
Tru1I TTAA 1 cut(s) 14
Tru9I TTAA 1 cut(s) 14
TscAI CASTG 1 cut(s) 287
TseFI GTSAC 1 cut(s) 147
TseI GCWGC 3 cut(s) 203, 206, 209
Tsp45I GTSAC 1 cut(s) 147
TspRI CASTG 1 cut(s) 287
VpaK11BI GGWCC 1 cut(s) 261
XmnI GAANNNNTTC 1 cut(s) 86
XspI CTAG 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.