Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0004547

Physical Location & Seq

Genomic Coordinates Reverse (-)

26325210 .. 26327032

Gene Structure 1823 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1183000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

ATGGCAACTTTGAAAGTGAGTTTGAGCGGCACTGCTGCTCCTACTTCTTCACCATCACCATCTCTGAAATCTTGGCCACACATCTCAGATTCTCCCCCCAAGATTTCAGTGGTAGCCAGATTTCCAAACGCCACCGTATTAACTCCTCCCAAGCTCCGTCTTCAGGCTTCTCTGGGGAAGAAAACCAGAGCTTCAGTCTCTGCAGCTATGGAAACCGGTGGGCAAGAAGTTCTTCCACCAGCTCTTACTTCTACGTCGGACCCACCTCCAATCTTCAATGGAAATACAAGAGGGTTGGAGGAAAAGATACAATTGGTTTCTATTGATCTGCAAGACAGGCCTGCTTGGTACAAGGAGAAAGTCTACCTTGCTAACAAGGATCCCGCGAAGAAAGAGTTTGGGGAAGAGTTGCTGTCCTACACAGACTCCTTCAATAGATCTGTGTTTTCGTCAGTAAAACAAGATGAAATCGAGTCAGCTGGTGAAACGATCACTTGCTCCTTTCAATGTTACTATTTAAGTTGCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

177

Amino Acids

19.08

Weight (kDa)

7.65

Isoelectric Point (pI)

55.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20610 FvH4_7g20620 FvH4_7g20620
malus_domestica	MD01G1115000.v1.1 MD07G1183000.v1.1
prunus_persica	Prupe.2G221700_v2.0.a1 Prupe.2G221700_v2.0.a1
pyrus_communis	pycom01g14390
rosa_chinensis	RchiOBHm_Chr1g0364651 RchiOBHm_Chr1g0364661
rosa_laevigata	RLG00000027469
rosa_multiflora	Rmu_sc0024218.1_g000001 Rmu_ssc0000112.1_g000036 Rmu_ssc0000112.1_g000037 Rmu_ssc0000282.1_g000016
rosa_roxburghii	Rroxscaffold_1G00029240 Rroxscaffold_4G00291770 Rroxscaffold_4G00292190 Rroxscaffold_7G00185900 Rroxscaffold_7G00191070 Rroxscaffold_7G00191090 Rroxscaffold_7G00197330
rosa_rugosa	Rorug01G0317400
rosa_samantha	Rh1AG326400 Rh1AG326500 Rh1BG287600 Rh1BG287700 Rh1CG304400 Rh1CG304500 Rh1DG319300 Rh1DG319400
rosa_wichuraiana	Rw1G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	27
AccI	GTMKAC	1 cut(s)	363
AccII	CGCG	1 cut(s)	386
AciI	CCGC	2 cut(s)	27, 384
AclWI	GGATC	2 cut(s)	374, 387
AcoI	YGGCCR	1 cut(s)	74
AcuI	CTGAAG	2 cut(s)	146, 177
AfaI	GTAC	1 cut(s)	350
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgeI	ACCGGT	1 cut(s)	215
AgsI	TTSAA	4 cut(s)	13, 277, 433, 506
AluBI	AGCT	5 cut(s)	154, 191, 206, 242, 479
AluI	AGCT	5 cut(s)	154, 191, 206, 242, 479
Alw26I	GTCTC	1 cut(s)	202
AlwI	GGATC	2 cut(s)	374, 387
AlwNI	CAGNNNCTG	1 cut(s)	200
AoxI	GGCC	2 cut(s)	74, 338
ApeKI	GCWGC	2 cut(s)	35, 203
AsiGI	ACCGGT	1 cut(s)	215
Asp700I	GAANNNNTTC	1 cut(s)	231
AspS9I	GGNCC	1 cut(s)	259
AsuHPI	GGTGA	3 cut(s)	42, 48, 494
AvaII	GGWCC	1 cut(s)	259
BalI	TGGCCA	1 cut(s)	76
BamHI	GGATCC	1 cut(s)	379
BbsI	GAAGAC	1 cut(s)	152
BbvI	GCAGC	2 cut(s)	22, 215
BccI	CCATC	2 cut(s)	61, 67
BcoDI	GTCTC	1 cut(s)	202
BfmI	CTRYAG	1 cut(s)	201
BglII	AGATCT	1 cut(s)	437
BisI	GCNGC	3 cut(s)	28, 36, 204
BlsI	GCNGC	3 cut(s)	29, 37, 205
Bme18I	GGWCC	1 cut(s)	259
BmgT120I	GGNCC	1 cut(s)	259
BmiI	GGNNCC	2 cut(s)	261, 381
BpiI	GAAGAC	1 cut(s)	152
BsaWI	WCCGGW	1 cut(s)	215
BsaXI	ACNNNNNCTCC	4 cut(s)	22, 52, 410, 440
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse118I	RCCGGY	1 cut(s)	215
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	1 cut(s)	99
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	22, 215
Bsh1236I	CGCG	1 cut(s)	386
BshFI	GGCC	2 cut(s)	76, 340
BshTI	ACCGGT	1 cut(s)	215
BsiSI	CCGG	1 cut(s)	216
BslI	CCNNNNNNNGG	1 cut(s)	163
BsmAI	GTCTC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	76, 340
Bsp143I	GATC	4 cut(s)	325, 379, 437, 489
BspACI	CCGC	2 cut(s)	27, 384
BspANI	GGCC	2 cut(s)	76, 340
BspCNI	CTCAG	1 cut(s)	98
BspFNI	CGCG	1 cut(s)	386
BspLI	GGNNCC	2 cut(s)	261, 381
BspMAI	CTGCAG	1 cut(s)	205
BspPI	GGATC	2 cut(s)	374, 387
BsrBI	CCGCTC	1 cut(s)	27
BsrFI	RCCGGY	1 cut(s)	215
BssAI	RCCGGY	1 cut(s)	215
BssMI	GATC	4 cut(s)	325, 379, 437, 489
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	1 cut(s)	399
BstC8I	GCNNGC	1 cut(s)	342
BstDEI	CTNAG	1 cut(s)	85
BstFNI	CGCG	1 cut(s)	386
BstKTI	GATC	4 cut(s)	328, 382, 440, 492
BstMAI	GTCTC	1 cut(s)	202
BstMBI	GATC	4 cut(s)	325, 379, 437, 489
BstMWI	GCNNNNNNNGC	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	201
BstUI	CGCG	1 cut(s)	386
BstV1I	GCAGC	2 cut(s)	22, 215
BstV2I	GAAGAC	1 cut(s)	152
BstX2I	RGATCY	2 cut(s)	379, 437
BstYI	RGATCY	2 cut(s)	379, 437
BsuRI	GGCC	2 cut(s)	76, 340
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	30, 114
Cac8I	GCNNGC	1 cut(s)	342
CaiI	CAGNNNCTG	1 cut(s)	200
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	259
Csp6I	GTAC	1 cut(s)	349
CspAI	ACCGGT	1 cut(s)	215
CviJI	RGCY	9 cut(s)	76, 116, 154, 167, 191, 206, 242, 340, 479
CviKI_1	RGCY	9 cut(s)	76, 116, 154, 167, 191, 206, 242, 340, 479
CviQI	GTAC	1 cut(s)	349
DdeI	CTNAG	1 cut(s)	85
DpnI	GATC	4 cut(s)	327, 381, 439, 491
DpnII	GATC	4 cut(s)	325, 379, 437, 489
EaeI	YGGCCR	1 cut(s)	74
Eam1104I	CTCTTC	1 cut(s)	399
EarI	CTCTTC	1 cut(s)	399
Eco147I	AGGCCT	1 cut(s)	340
Eco47I	GGWCC	1 cut(s)	259
Eco57I	CTGAAG	2 cut(s)	146, 177
FaiI	YATR	1 cut(s)	209
FalI	AAGNNNNNCTT	4 cut(s)	216, 248, 351, 383
FauI	CCCGC	1 cut(s)	391
FblI	GTMKAC	1 cut(s)	363
Fnu4HI	GCNGC	3 cut(s)	28, 36, 204
Fsp4HI	GCNGC	3 cut(s)	28, 36, 204
GluI	GCNGC	3 cut(s)	28, 36, 204
HaeIII	GGCC	2 cut(s)	76, 340
HapII	CCGG	1 cut(s)	216
HinfI	GANTC	3 cut(s)	89, 425, 473
HpaII	CCGG	1 cut(s)	216
HphI	GGTGA	3 cut(s)	42, 48, 494
Hpy166II	GTNNAC	1 cut(s)	364
Hpy188I	TCNGA	3 cut(s)	66, 88, 259
Hpy8I	GTNNAC	1 cut(s)	364
Hpy99I	CGWCG	1 cut(s)	259
HpyAV	CCTTC	1 cut(s)	439
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	254
HpyCH4V	TGCA	3 cut(s)	203, 331, 525
HpyF10VI	GCNNNNNNNGC	1 cut(s)	337
HpyF3I	CTNAG	1 cut(s)	85
HpySE526I	ACGT	1 cut(s)	254
Kzo9I	GATC	4 cut(s)	325, 379, 437, 489
LmnI	GCTCC	3 cut(s)	43, 159, 503
LpnPI	CCDG	9 cut(s)	130, 149, 158, 199, 229, 252, 322, 354, 465
Lsp1109I	GCAGC	2 cut(s)	22, 215
MaeII	ACGT	1 cut(s)	254
MaeIII	GTNAC	1 cut(s)	509
MalI	GATC	4 cut(s)	327, 381, 439, 491
MbiI	CCGCTC	1 cut(s)	27
MboI	GATC	4 cut(s)	325, 379, 437, 489
MboII	GAAGA	7 cut(s)	39, 152, 190, 224, 265, 400, 416
MfeI	CAATTG	1 cut(s)	311
MflI	RGATCY	2 cut(s)	379, 437
MlsI	TGGCCA	1 cut(s)	76
MluCI	AATT	2 cut(s)	311, 526
MluNI	TGGCCA	1 cut(s)	76
MlyI	GAGTC	2 cut(s)	419, 482
MmeI	TCCRAC	2 cut(s)	237, 276
MnlI	CCTC	4 cut(s)	156, 276, 284, 292
Mox20I	TGGCCA	1 cut(s)	76
MroXI	GAANNNNTTC	1 cut(s)	231
MscI	TGGCCA	1 cut(s)	76
MseI	TTAA	3 cut(s)	140, 518, 529
Msp20I	TGGCCA	1 cut(s)	76
MspA1I	CMGCKG	1 cut(s)	479
MspI	CCGG	1 cut(s)	216
MunI	CAATTG	1 cut(s)	311
MvnI	CGCG	1 cut(s)	386
MwoI	GCNNNNNNNGC	1 cut(s)	337
NdeII	GATC	4 cut(s)	325, 379, 437, 489
NlaIV	GGNNCC	2 cut(s)	261, 381
PceI	AGGCCT	1 cut(s)	340
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	1 cut(s)	89
PinAI	ACCGGT	1 cut(s)	215
PkrI	GCNGC	3 cut(s)	29, 37, 205
PleI	GAGTC	2 cut(s)	419, 481
PpsI	GAGTC	2 cut(s)	419, 481
PspN4I	GGNNCC	2 cut(s)	261, 381
PspPI	GGNCC	1 cut(s)	259
PstI	CTGCAG	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	200
PsuI	RGATCY	2 cut(s)	379, 437
PvuII	CAGCTG	1 cut(s)	479
RsaI	GTAC	1 cut(s)	350
RsaNI	GTAC	1 cut(s)	349
SaqAI	TTAA	3 cut(s)	140, 518, 529
SatI	GCNGC	3 cut(s)	28, 36, 204
Sau3AI	GATC	4 cut(s)	325, 379, 437, 489
Sau96I	GGNCC	1 cut(s)	259
SchI	GAGTC	2 cut(s)	419, 482
SetI	ASST	8 cut(s)	156, 193, 208, 244, 257, 268, 369, 481
SfcI	CTRYAG	1 cut(s)	201
SinI	GGWCC	1 cut(s)	259
Sse9I	AATT	2 cut(s)	311, 526
SseBI	AGGCCT	1 cut(s)	340
SsiI	CCGC	2 cut(s)	27, 384
StuI	AGGCCT	1 cut(s)	340
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	257
TaqI	TCGA	1 cut(s)	471
TasI	AATT	2 cut(s)	311, 526
TauI	GCSGC	1 cut(s)	30
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	3 cut(s)	140, 518, 529
Tru9I	TTAA	3 cut(s)	140, 518, 529
TscAI	CASTG	2 cut(s)	37, 114
TseI	GCWGC	2 cut(s)	35, 203
TspDTI	ATGAA	1 cut(s)	480
TspGWI	ACGGA	1 cut(s)	146
TspRI	CASTG	2 cut(s)	37, 114
VpaK11BI	GGWCC	1 cut(s)	259
XcmI	CCANNNNNNNNNTGG	1 cut(s)	106
XmiI	GTMKAC	1 cut(s)	363
XmnI	GAANNNNTTC	1 cut(s)	231

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.