Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004547

Physical Location & Seq

Genomic Coordinates Reverse (-)

31587745 .. 31588290

Gene Structure 546 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00191090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGATCTGCAGCAGTTGCCGGAGGGTTGCATAGCCAACATCATATCGTTGACGACTCCGAAGAGGTCGCCGCCGCAACGGACCTGTCCTCCTAAGCTTCGACTTCAAGCTAAAGCAACCGAGCTTCACTCTCGCAACAATGGCAACGGTGTGCATGAGGCTTTTCCTCCGGCTCTTACTTCTACCTCGGACCCTCCTTCAATCTTCGATGGGAAAACAAGGTTGTATATATCTTACACATGTCCATTTGCGGAGCGTGCGTGGATTGCCCGGAACTGCAAGGGATTGGAGGAAAAGATAGAATTGGTTCCTATTAATCTGCAAGACAGGCCTTCTTGGTACAAAGAGAAAGTCTACCCTCCTAACAAGGTGCCATCACCGGAACACAATAACGAAGTCAAAGGAGAGAGTCTTGATTTGATTAGATACATCGACGGTAACTTTGAAGAGCCTTCAACGTTCCACGATGATCCCGCAAAGAGAGAGTTTGCAGAAGAGAAGGACAAAGCAGAAAAAAAGGCAAGTTTATTTGGGTGGTTACGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

181

Amino Acids

20.6

Weight (kDa)

6.91

Isoelectric Point (pI)

65.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	75 - 151	1.8e-18	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	80 - 145	8.6e-13	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20610 FvH4_7g20620 FvH4_7g20620
malus_domestica	MD01G1115000.v1.1 MD07G1183000.v1.1
prunus_persica	Prupe.2G221700_v2.0.a1 Prupe.2G221700_v2.0.a1
pyrus_communis	pycom01g14390
rosa_chinensis	RchiOBHm_Chr1g0364651 RchiOBHm_Chr1g0364661
rosa_laevigata	RLG00000027469
rosa_multiflora	Rmu_sc0024218.1_g000001 Rmu_ssc0000112.1_g000036 Rmu_ssc0000112.1_g000037 Rmu_ssc0000282.1_g000016
rosa_roxburghii	Rroxscaffold_1G00029240 Rroxscaffold_4G00291770 Rroxscaffold_4G00292190 Rroxscaffold_7G00185900 Rroxscaffold_7G00191070 Rroxscaffold_7G00191090 Rroxscaffold_7G00197330
rosa_rugosa	Rorug01G0317400
rosa_samantha	Rh1AG326400 Rh1AG326500 Rh1BG287600 Rh1BG287700 Rh1CG304400 Rh1CG304500 Rh1DG319300 Rh1DG319400
rosa_wichuraiana	Rw1G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	370
AccI	GTMKAC	1 cut(s)	354
AciI	CCGC	4 cut(s)	71, 74, 251, 474
AclI	AACGTT	1 cut(s)	458
AclWI	GGATC	2 cut(s)	12, 464
AfaI	GTAC	1 cut(s)	341
AflIII	ACRYGT	1 cut(s)	239
AgsI	TTSAA	4 cut(s)	107, 201, 446, 456
AluBI	AGCT	3 cut(s)	97, 110, 124
AluI	AGCT	3 cut(s)	97, 110, 124
AlwI	GGATC	2 cut(s)	12, 464
AoxI	GGCC	1 cut(s)	329
ApeKI	GCWGC	1 cut(s)	10
ArsI	GACNNNNNNTTYG	4 cut(s)	336, 368, 425, 457
AseI	ATTAAT	1 cut(s)	315
Asp700I	GAANNNNTTC	1 cut(s)	306
AspS9I	GGNCC	2 cut(s)	81, 190
AsuC2I	CCSGG	1 cut(s)	271
AsuHPI	GGTGA	1 cut(s)	369
AvaII	GGWCC	2 cut(s)	81, 190
BanI	GGYRCC	1 cut(s)	370
BbvI	GCAGC	1 cut(s)	22
BccI	CCATC	2 cut(s)	203, 382
BcnI	CCSGG	1 cut(s)	271
BfmI	CTRYAG	1 cut(s)	8
BisI	GCNGC	3 cut(s)	11, 71, 74
BlsI	GCNGC	3 cut(s)	12, 72, 75
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	2 cut(s)	81, 190
BmgT120I	GGNCC	2 cut(s)	81, 190
BmiI	GGNNCC	3 cut(s)	192, 309, 372
BmrFI	CCNGG	1 cut(s)	271
BplI	GAGNNNNNCTC	2 cut(s)	113, 145
Bpu10I	CCTNAGC	1 cut(s)	93
BpuMI	CCSGG	1 cut(s)	271
BsaJI	CCNNGG	1 cut(s)	186
BsaWI	WCCGGW	1 cut(s)	379
BsaXI	ACNNNNNCTCC	4 cut(s)	73, 103, 245, 275
BseDI	CCNNGG	1 cut(s)	186
BseXI	GCAGC	1 cut(s)	22
BshFI	GGCC	1 cut(s)	331
BshNI	GGYRCC	1 cut(s)	370
BsiSI	CCGG	4 cut(s)	20, 170, 271, 380
BsnI	GGCC	1 cut(s)	331
Bsp143I	GATC	2 cut(s)	4, 469
BspACI	CCGC	4 cut(s)	71, 74, 251, 474
BspANI	GGCC	1 cut(s)	331
BspLI	GGNNCC	3 cut(s)	192, 309, 372
BspMAI	CTGCAG	1 cut(s)	12
BspPI	GGATC	2 cut(s)	12, 464
BspQI	GCTCTTC	1 cut(s)	441
BspT107I	GGYRCC	1 cut(s)	370
BssECI	CCNNGG	1 cut(s)	186
BssMI	GATC	2 cut(s)	4, 469
Bst4CI	ACNGT	2 cut(s)	149, 437
Bst6I	CTCTTC	3 cut(s)	56, 441, 489
BstAPI	GCANNNNNTGC	1 cut(s)	16
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	93
BstKTI	GATC	2 cut(s)	7, 472
BstMBI	GATC	2 cut(s)	4, 469
BstMWI	GCNNNNNNNGC	5 cut(s)	16, 141, 257, 266, 328
BstNSI	RCATGY	1 cut(s)	243
BstSCI	CCNGG	1 cut(s)	269
BstSFI	CTRYAG	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	22
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	331
Cac8I	GCNNGC	1 cut(s)	258
Cfr13I	GGNCC	2 cut(s)	81, 190
Csp6I	GTAC	1 cut(s)	340
CviAII	CATG	2 cut(s)	155, 240
CviJI	RGCY	8 cut(s)	35, 97, 110, 124, 161, 173, 331, 451
CviKI_1	RGCY	8 cut(s)	35, 97, 110, 124, 161, 173, 331, 451
CviQI	GTAC	1 cut(s)	340
DdeI	CTNAG	1 cut(s)	93
DpnI	GATC	2 cut(s)	6, 471
DpnII	GATC	2 cut(s)	4, 469
Eam1104I	CTCTTC	3 cut(s)	56, 441, 489
EarI	CTCTTC	3 cut(s)	56, 441, 489
Eco147I	AGGCCT	1 cut(s)	331
Eco47I	GGWCC	2 cut(s)	81, 190
FaeI	CATG	2 cut(s)	158, 243
FaiI	YATR	6 cut(s)	32, 44, 156, 228, 230, 241
FatI	CATG	2 cut(s)	154, 239
FauI	CCCGC	1 cut(s)	481
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	3 cut(s)	11, 71, 74
Fsp4HI	GCNGC	3 cut(s)	11, 71, 74
GluI	GCNGC	3 cut(s)	11, 71, 74
HaeIII	GGCC	1 cut(s)	331
HapII	CCGG	4 cut(s)	20, 170, 271, 380
Hin1II	CATG	2 cut(s)	158, 243
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HindIII	AAGCTT	1 cut(s)	95
HinfI	GANTC	2 cut(s)	55, 409
HpaII	CCGG	4 cut(s)	20, 170, 271, 380
HphI	GGTGA	1 cut(s)	369
Hpy166II	GTNNAC	2 cut(s)	51, 355
Hpy188I	TCNGA	2 cut(s)	60, 190
Hpy188III	TCNNGA	1 cut(s)	413
Hpy8I	GTNNAC	2 cut(s)	51, 355
Hpy99I	CGWCG	1 cut(s)	437
HpyAV	CCTTC	4 cut(s)	207, 342, 462, 493
HpyCH4III	ACNGT	2 cut(s)	149, 437
HpyCH4IV	ACGT	1 cut(s)	458
HpyCH4V	TGCA	6 cut(s)	10, 30, 154, 279, 322, 491
HpyF10VI	GCNNNNNNNGC	5 cut(s)	16, 141, 257, 266, 328
HpyF3I	CTNAG	1 cut(s)	93
HpySE526I	ACGT	1 cut(s)	458
Hsp92II	CATG	2 cut(s)	158, 243
Kzo9I	GATC	2 cut(s)	4, 469
LguI	GCTCTTC	1 cut(s)	441
LmnI	GCTCC	1 cut(s)	253
LpnPI	CCDG	6 cut(s)	33, 97, 183, 284, 313, 393
Lsp1109I	GCAGC	1 cut(s)	22
MaeII	ACGT	1 cut(s)	458
MaeIII	GTNAC	2 cut(s)	437, 537
MalI	GATC	2 cut(s)	6, 471
MboI	GATC	2 cut(s)	4, 469
MboII	GAAGA	4 cut(s)	73, 196, 458, 506
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	1 cut(s)	302
MlyI	GAGTC	2 cut(s)	49, 418
MnlI	CCTC	9 cut(s)	16, 57, 99, 151, 177, 196, 204, 283, 369
MroXI	GAANNNNTTC	1 cut(s)	306
MseI	TTAA	1 cut(s)	315
MspI	CCGG	4 cut(s)	20, 170, 271, 380
MspR9I	CCNGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	5 cut(s)	16, 141, 257, 266, 328
NciI	CCSGG	1 cut(s)	271
NdeII	GATC	2 cut(s)	4, 469
NlaIII	CATG	2 cut(s)	158, 243
NlaIV	GGNNCC	3 cut(s)	192, 309, 372
NspI	RCATGY	1 cut(s)	243
PceI	AGGCCT	1 cut(s)	331
PciI	ACATGT	1 cut(s)	239
PciSI	GCTCTTC	1 cut(s)	441
PdmI	GAANNNNTTC	1 cut(s)	306
PkrI	GCNGC	3 cut(s)	12, 72, 75
PleI	GAGTC	2 cut(s)	49, 417
PpsI	GAGTC	2 cut(s)	49, 417
PscI	ACATGT	1 cut(s)	239
PshBI	ATTAAT	1 cut(s)	315
Psp1406I	AACGTT	1 cut(s)	458
PspN4I	GGNNCC	3 cut(s)	192, 309, 372
PspPI	GGNCC	2 cut(s)	81, 190
PstI	CTGCAG	1 cut(s)	12
PsuI	RGATCY	1 cut(s)	4
RsaI	GTAC	1 cut(s)	341
RsaNI	GTAC	1 cut(s)	340
SapI	GCTCTTC	1 cut(s)	441
SaqAI	TTAA	1 cut(s)	315
SatI	GCNGC	3 cut(s)	11, 71, 74
Sau3AI	GATC	2 cut(s)	4, 469
Sau96I	GGNCC	2 cut(s)	81, 190
SchI	GAGTC	2 cut(s)	49, 418
ScrFI	CCNGG	1 cut(s)	271
SetI	ASST	9 cut(s)	68, 86, 99, 112, 126, 188, 224, 372, 461
SfcI	CTRYAG	1 cut(s)	8
SinI	GGWCC	2 cut(s)	81, 190
Sse9I	AATT	1 cut(s)	302
SseBI	AGGCCT	1 cut(s)	331
SsiI	CCGC	4 cut(s)	71, 74, 251, 474
StuI	AGGCCT	1 cut(s)	331
StyD4I	CCNGG	1 cut(s)	269
TaaI	ACNGT	2 cut(s)	149, 437
TaiI	ACGT	1 cut(s)	461
TaqI	TCGA	3 cut(s)	100, 207, 432
TasI	AATT	1 cut(s)	302
TauI	GCSGC	2 cut(s)	73, 76
Tru1I	TTAA	1 cut(s)	315
Tru9I	TTAA	1 cut(s)	315
TseI	GCWGC	1 cut(s)	10
TspGWI	ACGGA	1 cut(s)	94
VpaK11BI	GGWCC	2 cut(s)	81, 190
VspI	ATTAAT	1 cut(s)	315
XceI	RCATGY	1 cut(s)	243
XmiI	GTMKAC	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.