Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004547

Physical Location & Seq

Genomic Coordinates Forward (+)

41505169 .. 41511575

Gene Structure 6407 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00197330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCAACTGGTGTGCAAGAGGCTCTTCCACCAGCTCTTACTTCTACCTCAGACCCTCCTTCAATCTTCGATGGGAAAACAACGTTGTATATATCTTACACATGTCCATTTGCACAGCGTGCGTGGATTGCCCAGAACTGCAAGGGATTGGAGGAAAAGATAGAATTGGTTCCTATTAATCTACAAGATAGGCCTTCTTGGTACAAAGAGAAAGTCTACCCTCCTAACAAGGTGCCATCGCTGGAACACAATAACGAAGTCAAAGGAGAGAGTCTTGATTTGATTAGATACATCGACAGTAACTTTGAAGGGCCTTCACTGTTCCCTGATGATCCTGCAAAGAGAGAGTTTGCAGAAGAGTTGTTTACCTACACCGACTCCTTCAGCAAACCAGTGATTTCCTTTTTTAAAGGAGAAGGAACTGAGGCAGCTGCTGGTGCTGCATTTGACTATATTGAAACTGCTCTTTCCAAATTTGAAGATGGACCTTTCCTTCTTGGTCAATTCAGTCTGGTGGATATCGCTTATGCACCATTCATTGATAGATTTCAGCATTTTGCATTGGATGTGAAGAAATATGACATCACTGCAGGGAGACCTAAACTAGCAGCGTGGATTGAGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

208

Amino Acids

23.35

Weight (kDa)

4.67

Isoelectric Point (pI)

44.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	29 - 105	8e-21	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	34 - 100	1.2e-14	Glutathione S-transferase, N-terminal domain
GST_C_2	PF13410	143 - 207	5.1e-11	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20610 FvH4_7g20620 FvH4_7g20620
malus_domestica	MD01G1115000.v1.1 MD07G1183000.v1.1
prunus_persica	Prupe.2G221700_v2.0.a1 Prupe.2G221700_v2.0.a1
pyrus_communis	pycom01g14390
rosa_chinensis	RchiOBHm_Chr1g0364651 RchiOBHm_Chr1g0364661
rosa_laevigata	RLG00000027469
rosa_multiflora	Rmu_sc0024218.1_g000001 Rmu_ssc0000112.1_g000036 Rmu_ssc0000112.1_g000037 Rmu_ssc0000282.1_g000016
rosa_roxburghii	Rroxscaffold_1G00029240 Rroxscaffold_4G00291770 Rroxscaffold_4G00292190 Rroxscaffold_7G00185900 Rroxscaffold_7G00191070 Rroxscaffold_7G00191090 Rroxscaffold_7G00197330
rosa_rugosa	Rorug01G0317400
rosa_samantha	Rh1AG326400 Rh1AG326500 Rh1BG287600 Rh1BG287700 Rh1CG304400 Rh1CG304500 Rh1DG319300 Rh1DG319400
rosa_wichuraiana	Rw1G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	232
AccI	GTMKAC	1 cut(s)	216
AclI	AACGTT	1 cut(s)	83
AclWI	GGATC	1 cut(s)	326
AcsI	RAATTY	1 cut(s)	473
AcuI	CTGAAG	1 cut(s)	367
AdeI	CACNNNGTG	1 cut(s)	119
AfaI	GTAC	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	101
AgsI	TTSAA	4 cut(s)	63, 308, 458, 479
AluBI	AGCT	2 cut(s)	35, 431
AluI	AGCT	2 cut(s)	35, 431
Alw26I	GTCTC	1 cut(s)	589
AlwI	GGATC	1 cut(s)	326
AlwNI	CAGNNNCTG	1 cut(s)	434
AoxI	GGCC	2 cut(s)	191, 311
ApeKI	GCWGC	4 cut(s)	428, 431, 440, 608
ApoI	RAATTY	1 cut(s)	473
ArsI	GACNNNNNNTTYG	4 cut(s)	198, 230, 287, 319
AseI	ATTAAT	1 cut(s)	177
Asp700I	GAANNNNTTC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	311, 485
AvaII	GGWCC	1 cut(s)	485
BanI	GGYRCC	1 cut(s)	232
BbvI	GCAGC	4 cut(s)	418, 427, 440, 620
BccI	CCATC	3 cut(s)	65, 244, 476
BcoDI	GTCTC	1 cut(s)	589
BfaI	CTAG	1 cut(s)	605
BfmI	CTRYAG	1 cut(s)	588
BisI	GCNGC	4 cut(s)	429, 432, 441, 609
BlsI	GCNGC	4 cut(s)	430, 433, 442, 610
Bme18I	GGWCC	1 cut(s)	485
BmgT120I	GGNCC	2 cut(s)	311, 485
BmiI	GGNNCC	2 cut(s)	171, 234
BsaI	GGTCTC	1 cut(s)	589
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bse1I	ACTGG	2 cut(s)	13, 392
BseGI	GGATG	1 cut(s)	571
BseMII	CTCAG	2 cut(s)	63, 414
BseNI	ACTGG	2 cut(s)	13, 392
BseXI	GCAGC	4 cut(s)	418, 427, 440, 620
BshFI	GGCC	2 cut(s)	193, 313
BshNI	GGYRCC	1 cut(s)	232
BsmAI	GTCTC	1 cut(s)	589
BsnI	GGCC	2 cut(s)	193, 313
Bso31I	GGTCTC	1 cut(s)	589
Bsp143I	GATC	1 cut(s)	331
BspANI	GGCC	2 cut(s)	193, 313
BspCNI	CTCAG	2 cut(s)	62, 415
BspLI	GGNNCC	2 cut(s)	171, 234
BspMAI	CTGCAG	1 cut(s)	592
BspPI	GGATC	1 cut(s)	326
BspQI	GCTCTTC	1 cut(s)	30
BspT107I	GGYRCC	1 cut(s)	232
BspTNI	GGTCTC	1 cut(s)	589
BsrI	ACTGG	2 cut(s)	13, 392
BssMI	GATC	1 cut(s)	331
Bst4CI	ACNGT	2 cut(s)	299, 321
Bst6I	CTCTTC	2 cut(s)	30, 351
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	2 cut(s)	49, 423
BstF5I	GGATG	1 cut(s)	571
BstKTI	GATC	1 cut(s)	334
BstMAI	GTCTC	1 cut(s)	589
BstMBI	GATC	1 cut(s)	331
BstMWI	GCNNNNNNNGC	4 cut(s)	119, 128, 437, 440
BstNSI	RCATGY	1 cut(s)	105
BstSFI	CTRYAG	1 cut(s)	588
BstV1I	GCAGC	4 cut(s)	418, 427, 440, 620
BsuRI	GGCC	2 cut(s)	193, 313
BtgZI	GCGATG	1 cut(s)	222
BtsCI	GGATG	1 cut(s)	571
BtsI	GCAGTG	1 cut(s)	585
BtsIMutI	CAGTG	3 cut(s)	317, 399, 585
Cac8I	GCNNGC	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	434
Cfr13I	GGNCC	2 cut(s)	311, 485
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	1 cut(s)	102
CviJI	RGCY	5 cut(s)	23, 35, 193, 313, 431
CviKI_1	RGCY	5 cut(s)	23, 35, 193, 313, 431
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	49, 423
DpnI	GATC	1 cut(s)	333
DpnII	GATC	1 cut(s)	331
DraI	TTTAAA	1 cut(s)	409
DraIII	CACNNNGTG	1 cut(s)	119
Eam1104I	CTCTTC	2 cut(s)	30, 351
EarI	CTCTTC	2 cut(s)	30, 351
Eco147I	AGGCCT	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	589
Eco32I	GATATC	1 cut(s)	520
Eco47I	GGWCC	1 cut(s)	485
Eco57I	CTGAAG	1 cut(s)	367
EcoO109I	RGGNCCY	1 cut(s)	311
EcoRV	GATATC	1 cut(s)	520
FaeI	CATG	1 cut(s)	105
FaiI	YATR	6 cut(s)	90, 92, 103, 453, 528, 579
FalI	AAGNNNNNCTT	2 cut(s)	9, 41
FatI	CATG	1 cut(s)	101
FblI	GTMKAC	1 cut(s)	216
Fnu4HI	GCNGC	4 cut(s)	429, 432, 441, 609
FokI	GGATG	1 cut(s)	578
Fsp4HI	GCNGC	4 cut(s)	429, 432, 441, 609
FspBI	CTAG	1 cut(s)	605
GluI	GCNGC	4 cut(s)	429, 432, 441, 609
HaeIII	GGCC	2 cut(s)	193, 313
Hin1II	CATG	1 cut(s)	105
HinfI	GANTC	2 cut(s)	271, 377
Hpy166II	GTNNAC	2 cut(s)	217, 366
Hpy188I	TCNGA	1 cut(s)	52
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	2 cut(s)	217, 366
HpyAV	CCTTC	7 cut(s)	69, 204, 302, 324, 391, 410, 503
HpyCH4III	ACNGT	2 cut(s)	299, 321
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	9 cut(s)	16, 113, 141, 338, 353, 443, 530, 560, 590
HpyF10VI	GCNNNNNNNGC	4 cut(s)	119, 128, 437, 440
HpyF3I	CTNAG	2 cut(s)	49, 423
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	331
LguI	GCTCTTC	1 cut(s)	30
LpnPI	CCDG	9 cut(s)	45, 146, 227, 339, 348, 405, 420, 497, 576
Lsp1109I	GCAGC	4 cut(s)	418, 427, 440, 620
MaeI	CTAG	1 cut(s)	605
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	1 cut(s)	333
MboI	GATC	1 cut(s)	331
MboII	GAAGA	5 cut(s)	17, 58, 368, 491, 583
MluCI	AATT	3 cut(s)	164, 473, 503
MlyI	GAGTC	2 cut(s)	280, 371
MnlI	CCTC	7 cut(s)	13, 58, 66, 145, 231, 418, 613
MroXI	GAANNNNTTC	1 cut(s)	168
MseI	TTAA	2 cut(s)	177, 408
MspA1I	CMGCKG	1 cut(s)	431
MwoI	GCNNNNNNNGC	4 cut(s)	119, 128, 437, 440
NdeII	GATC	1 cut(s)	331
NlaIII	CATG	1 cut(s)	105
NlaIV	GGNNCC	2 cut(s)	171, 234
NspI	RCATGY	1 cut(s)	105
PceI	AGGCCT	1 cut(s)	193
PciI	ACATGT	1 cut(s)	101
PciSI	GCTCTTC	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	168
PkrI	GCNGC	4 cut(s)	430, 433, 442, 610
PleI	GAGTC	2 cut(s)	279, 371
PpsI	GAGTC	2 cut(s)	279, 371
PscI	ACATGT	1 cut(s)	101
PshBI	ATTAAT	1 cut(s)	177
Psp1406I	AACGTT	1 cut(s)	83
PspN4I	GGNNCC	2 cut(s)	171, 234
PspPI	GGNCC	2 cut(s)	311, 485
PstI	CTGCAG	1 cut(s)	592
PstNI	CAGNNNCTG	1 cut(s)	434
PvuII	CAGCTG	1 cut(s)	431
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SapI	GCTCTTC	1 cut(s)	30
SaqAI	TTAA	2 cut(s)	177, 408
SatI	GCNGC	4 cut(s)	429, 432, 441, 609
Sau3AI	GATC	1 cut(s)	331
Sau96I	GGNCC	2 cut(s)	311, 485
SchI	GAGTC	2 cut(s)	280, 371
SetI	ASST	8 cut(s)	37, 50, 86, 234, 371, 433, 490, 601
SfcI	CTRYAG	1 cut(s)	588
SinI	GGWCC	1 cut(s)	485
Sse9I	AATT	3 cut(s)	164, 473, 503
SseBI	AGGCCT	1 cut(s)	193
SspMI	CTAG	1 cut(s)	605
StuI	AGGCCT	1 cut(s)	193
TaaI	ACNGT	2 cut(s)	299, 321
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	2 cut(s)	69, 294
TasI	AATT	3 cut(s)	164, 473, 503
Tru1I	TTAA	2 cut(s)	177, 408
Tru9I	TTAA	2 cut(s)	177, 408
TscAI	CASTG	3 cut(s)	324, 399, 592
TseI	GCWGC	4 cut(s)	428, 431, 440, 608
TspDTI	ATGAA	1 cut(s)	526
TspRI	CASTG	3 cut(s)	324, 399, 592
VpaK11BI	GGWCC	1 cut(s)	485
VspI	ATTAAT	1 cut(s)	177
XapI	RAATTY	1 cut(s)	473
XceI	RCATGY	1 cut(s)	105
XmiI	GTMKAC	1 cut(s)	216
XmnI	GAANNNNTTC	1 cut(s)	168
XspI	CTAG	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.