Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004547

Physical Location & Seq

Genomic Coordinates Forward (+)

11933950 .. 11939532

Gene Structure 5583 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027469

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGACTACCACTTTGAAAGTCAGTTTCAGAGGCGCTGTTCCTACTTCATCACCTCTGAAGTCTCGACCACACGTTTTAGATTCATTGTATGTAGCCAAGTTTCCAAACACCACCATACTATGTCCTCCTAAGCTTCGACTTCAAGCTAAAGCAACCAGAGCTTCACTCTCTGCAACAATGGCAACTGGTGTGCAAGAGGCTCGTCCACCAGCTCTTACTTCTACCTCAGACCCACCTTCAATCTTCGATGGGAAAACAAGGTTGTATATATCATACACATGTCCATTTGCACAGCGTGCGTGGATTGCCCGGAACTGCAAGGGATTGGAGGAAAAGATAGAATTGGTTCCTATTAATCTGCAAGACAGGCCTTCTTGGTACAAGGAGAAAGTCTACCCTCCTAACAAGGTGCCATCACTGGAACACAATAACGAAGTCAAAGGAGAGAGTCTTGATTTGATTAGATACATCGACAGCAACTTTGAAGGGCCTTCACTGTTCCCTGATGATCCTGCAAAGAGAGAATTTGCAGAAGAGTTGTTTTCCTACACCGACTCCTTCAACACATCTGTGTTTTCGTTTTTCAAAGGAGATGGAACTGAGGCAGATGCCGGTGCTGCATTTGACTATATTGAAACTGCTCTTTTGAAATTTGAGGATGGACCTTTCTTTCTTGGCCAATTCAGTCTGGTGGATATAGCTTATGCTCCATTCATTGAAAGATTTCAACCTTTTGCATTGGATGTGAAGAAGTTTGACATAACTGCAGGCAGACCTAAGCTGGCAGCATGGATTGAGGAGATGGACAAAAACGATGCTTACAATAGAACCCGACGTGATCCTAAAGTGCACGTTGAAATCTACAAGAAACGCTTTCCGCCTCGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

297

Amino Acids

33.5

Weight (kDa)

8.27

Isoelectric Point (pI)

48.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	88 - 164	2.6e-21	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	93 - 159	1.6e-15	Glutathione S-transferase, N-terminal domain
GST_C_2	PF13410	204 - 266	1e-10	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20610 FvH4_7g20620 FvH4_7g20620
malus_domestica	MD01G1115000.v1.1 MD07G1183000.v1.1
prunus_persica	Prupe.2G221700_v2.0.a1 Prupe.2G221700_v2.0.a1
pyrus_communis	pycom01g14390
rosa_chinensis	RchiOBHm_Chr1g0364651 RchiOBHm_Chr1g0364661
rosa_laevigata	RLG00000027469
rosa_multiflora	Rmu_sc0024218.1_g000001 Rmu_ssc0000112.1_g000036 Rmu_ssc0000112.1_g000037 Rmu_ssc0000282.1_g000016
rosa_roxburghii	Rroxscaffold_1G00029240 Rroxscaffold_4G00291770 Rroxscaffold_4G00292190 Rroxscaffold_7G00185900 Rroxscaffold_7G00191070 Rroxscaffold_7G00191090 Rroxscaffold_7G00197330
rosa_rugosa	Rorug01G0317400
rosa_samantha	Rh1AG326400 Rh1AG326500 Rh1BG287600 Rh1BG287700 Rh1CG304400 Rh1CG304500 Rh1DG319300 Rh1DG319400
rosa_wichuraiana	Rw1G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	409
AccI	GTMKAC	1 cut(s)	393
AciI	CCGC	1 cut(s)	878
AclWI	GGATC	2 cut(s)	503, 833
AcoI	YGGCCR	1 cut(s)	676
AcsI	RAATTY	2 cut(s)	524, 650
AcuI	CTGAAG	1 cut(s)	77
AdeI	CACNNNGTG	1 cut(s)	296
AfaI	GTAC	1 cut(s)	380
AflIII	ACRYGT	2 cut(s)	70, 278
AjiI	CACGTC	1 cut(s)	836
AleI	CACNNNNGTG	1 cut(s)	569
AluBI	AGCT	6 cut(s)	133, 146, 161, 212, 701, 781
AluI	AGCT	6 cut(s)	133, 146, 161, 212, 701, 781
Alw21I	GWGCWC	1 cut(s)	852
Alw26I	GTCTC	1 cut(s)	66
Alw44I	GTGCAC	1 cut(s)	848
AlwI	GGATC	2 cut(s)	503, 833
Ama87I	CYCGRG	1 cut(s)	882
AoxI	GGCC	3 cut(s)	368, 488, 676
ApaLI	GTGCAC	1 cut(s)	848
ApeKI	GCWGC	2 cut(s)	617, 785
ApoI	RAATTY	2 cut(s)	524, 650
ArsI	GACNNNNNNTTYG	3 cut(s)	27, 464, 496
AseI	ATTAAT	1 cut(s)	354
Asp700I	GAANNNNTTC	2 cut(s)	345, 723
AspLEI	GCGC	1 cut(s)	35
AspS9I	GGNCC	2 cut(s)	488, 662
AsuC2I	CCSGG	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	42
AvaI	CYCGRG	1 cut(s)	882
AvaII	GGWCC	1 cut(s)	662
BaeGI	GKGCMC	1 cut(s)	852
BalI	TGGCCA	1 cut(s)	678
BanI	GGYRCC	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	852
BbvI	GCAGC	2 cut(s)	604, 797
BccI	CCATC	5 cut(s)	242, 421, 587, 653, 796
BcgI	CGANNNNNNTGC	2 cut(s)	182, 216
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	765
BfoI	RGCGCY	1 cut(s)	36
BisI	GCNGC	2 cut(s)	618, 786
BlsI	GCNGC	2 cut(s)	619, 787
Bme1390I	CCNGG	1 cut(s)	310
Bme18I	GGWCC	1 cut(s)	662
BmeT110I	CYCGRG	1 cut(s)	882
BmgBI	CACGTC	1 cut(s)	836
BmgT120I	GGNCC	2 cut(s)	488, 662
BmiI	GGNNCC	2 cut(s)	348, 411
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	2 cut(s)	598, 805
BplI	GAGNNNNNCTC	2 cut(s)	150, 182
Bpu10I	CCTNAGC	2 cut(s)	129, 777
BpuMI	CCSGG	1 cut(s)	310
BsaJI	CCNNGG	1 cut(s)	881
BsaXI	ACNNNNNCTCC	2 cut(s)	539, 569
Bse118I	RCCGGY	1 cut(s)	611
Bse1I	ACTGG	2 cut(s)	190, 423
BseDI	CCNNGG	1 cut(s)	881
BseGI	GGATG	2 cut(s)	664, 748
BseMII	CTCAG	2 cut(s)	240, 591
BseNI	ACTGG	2 cut(s)	190, 423
BseRI	GAGGAG	1 cut(s)	812
BseSI	GKGCMC	1 cut(s)	852
BseXI	GCAGC	2 cut(s)	604, 797
BshFI	GGCC	3 cut(s)	370, 490, 678
BshNI	GGYRCC	1 cut(s)	409
BsiHKAI	GWGCWC	1 cut(s)	852
BsiHKCI	CYCGRG	1 cut(s)	882
BsiSI	CCGG	2 cut(s)	310, 612
BsmAI	GTCTC	1 cut(s)	66
BsnI	GGCC	3 cut(s)	370, 490, 678
BsoBI	CYCGRG	1 cut(s)	882
Bsp1286I	GDGCHC	1 cut(s)	852
Bsp143I	GATC	2 cut(s)	508, 838
BspACI	CCGC	1 cut(s)	878
BspANI	GGCC	3 cut(s)	370, 490, 678
BspCNI	CTCAG	2 cut(s)	239, 592
BspLI	GGNNCC	2 cut(s)	348, 411
BspMAI	CTGCAG	1 cut(s)	769
BspPI	GGATC	2 cut(s)	503, 833
BspT107I	GGYRCC	1 cut(s)	409
BsrFI	RCCGGY	1 cut(s)	611
BsrI	ACTGG	2 cut(s)	190, 423
BssAI	RCCGGY	1 cut(s)	611
BssECI	CCNNGG	1 cut(s)	881
BssMI	GATC	2 cut(s)	508, 838
Bst4CI	ACNGT	1 cut(s)	498
Bst6I	CTCTTC	1 cut(s)	528
BstAPI	GCANNNNNTGC	1 cut(s)	296
BstC8I	GCNNGC	3 cut(s)	297, 769, 783
BstDEI	CTNAG	4 cut(s)	129, 226, 600, 777
BstF5I	GGATG	2 cut(s)	664, 748
BstH2I	RGCGCY	1 cut(s)	36
BstHHI	GCGC	1 cut(s)	35
BstKTI	GATC	2 cut(s)	511, 841
BstMAI	GTCTC	1 cut(s)	66
BstMBI	GATC	2 cut(s)	508, 838
BstMWI	GCNNNNNNNGC	6 cut(s)	158, 179, 296, 305, 367, 617
BstNSI	RCATGY	1 cut(s)	282
BstSCI	CCNGG	1 cut(s)	308
BstSFI	CTRYAG	1 cut(s)	765
BstSLI	GKGCMC	1 cut(s)	852
BstV1I	GCAGC	2 cut(s)	604, 797
BsuRI	GGCC	3 cut(s)	370, 490, 678
BtrI	CACGTC	1 cut(s)	836
BtsCI	GGATG	2 cut(s)	664, 748
BtsIMutI	CAGTG	2 cut(s)	416, 494
Cac8I	GCNNGC	3 cut(s)	297, 769, 783
CfoI	GCGC	1 cut(s)	35
Cfr10I	RCCGGY	1 cut(s)	611
Cfr13I	GGNCC	2 cut(s)	488, 662
Csp6I	GTAC	1 cut(s)	379
CviAII	CATG	2 cut(s)	279, 789
CviQI	GTAC	1 cut(s)	379
DdeI	CTNAG	4 cut(s)	129, 226, 600, 777
DpnI	GATC	2 cut(s)	510, 840
DpnII	GATC	2 cut(s)	508, 838
DraIII	CACNNNGTG	1 cut(s)	296
EaeI	YGGCCR	1 cut(s)	676
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
EciI	GGCGGA	1 cut(s)	867
Eco147I	AGGCCT	1 cut(s)	370
Eco47I	GGWCC	1 cut(s)	662
Eco57I	CTGAAG	1 cut(s)	77
Eco88I	CYCGRG	1 cut(s)	882
EcoO109I	RGGNCCY	1 cut(s)	488
FaeI	CATG	2 cut(s)	282, 792
FalI	AAGNNNNNCTT	2 cut(s)	857, 889
FatI	CATG	2 cut(s)	278, 788
FblI	GTMKAC	1 cut(s)	393
Fnu4HI	GCNGC	2 cut(s)	618, 786
FokI	GGATG	2 cut(s)	671, 755
Fsp4HI	GCNGC	2 cut(s)	618, 786
GlaI	GCGC	1 cut(s)	34
GluI	GCNGC	2 cut(s)	618, 786
HaeII	RGCGCY	1 cut(s)	36
HaeIII	GGCC	3 cut(s)	370, 490, 678
HapII	CCGG	2 cut(s)	310, 612
HhaI	GCGC	1 cut(s)	35
Hin1II	CATG	2 cut(s)	282, 792
Hin6I	GCGC	1 cut(s)	33
HinP1I	GCGC	1 cut(s)	33
HindIII	AAGCTT	1 cut(s)	131
HinfI	GANTC	3 cut(s)	80, 448, 554
HpaII	CCGG	2 cut(s)	310, 612
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	3 cut(s)	206, 394, 850
Hpy188I	TCNGA	4 cut(s)	29, 57, 229, 890
Hpy188III	TCNNGA	2 cut(s)	63, 452
Hpy8I	GTNNAC	3 cut(s)	206, 394, 850
Hpy99I	CGWCG	1 cut(s)	837
HpyAV	CCTTC	5 cut(s)	246, 381, 479, 501, 568
HpyCH4III	ACNGT	1 cut(s)	498
HpyCH4IV	ACGT	3 cut(s)	72, 835, 852
HpyF10VI	GCNNNNNNNGC	6 cut(s)	158, 179, 296, 305, 367, 617
HpyF3I	CTNAG	4 cut(s)	129, 226, 600, 777
HpySE526I	ACGT	3 cut(s)	72, 835, 852
Hsp92II	CATG	2 cut(s)	282, 792
HspAI	GCGC	1 cut(s)	33
Kzo9I	GATC	2 cut(s)	508, 838
LmnI	GCTCC	1 cut(s)	712
Lsp1109I	GCAGC	2 cut(s)	604, 797
LweI	GCATC	2 cut(s)	598, 805
MaeII	ACGT	3 cut(s)	72, 835, 852
MalI	GATC	2 cut(s)	510, 840
MboI	GATC	2 cut(s)	508, 838
MboII	GAAGA	3 cut(s)	235, 545, 760
MhlI	GDGCHC	1 cut(s)	852
MlsI	TGGCCA	1 cut(s)	678
MluCI	AATT	4 cut(s)	341, 524, 650, 680
MluNI	TGGCCA	1 cut(s)	678
MlyI	GAGTC	2 cut(s)	457, 548
Mox20I	TGGCCA	1 cut(s)	678
MroXI	GAANNNNTTC	2 cut(s)	345, 723
MscI	TGGCCA	1 cut(s)	678
MseI	TTAA	1 cut(s)	354
MslI	CAYNNNNRTG	2 cut(s)	277, 569
Msp20I	TGGCCA	1 cut(s)	678
MspI	CCGG	2 cut(s)	310, 612
MspR9I	CCNGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	6 cut(s)	158, 179, 296, 305, 367, 617
NciI	CCSGG	1 cut(s)	310
NdeII	GATC	2 cut(s)	508, 838
NlaIII	CATG	2 cut(s)	282, 792
NlaIV	GGNNCC	2 cut(s)	348, 411
NspI	RCATGY	1 cut(s)	282
OliI	CACNNNNGTG	1 cut(s)	569
PceI	AGGCCT	1 cut(s)	370
PciI	ACATGT	1 cut(s)	278
PdmI	GAANNNNTTC	2 cut(s)	345, 723
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	619, 787
PleI	GAGTC	2 cut(s)	456, 548
PpsI	GAGTC	2 cut(s)	456, 548
PscI	ACATGT	1 cut(s)	278
PshBI	ATTAAT	1 cut(s)	354
PspN4I	GGNNCC	2 cut(s)	348, 411
PspPI	GGNCC	2 cut(s)	488, 662
PstI	CTGCAG	1 cut(s)	769
RsaI	GTAC	1 cut(s)	380
RsaNI	GTAC	1 cut(s)	379
RseI	CAYNNNNRTG	2 cut(s)	277, 569
SaqAI	TTAA	1 cut(s)	354
SatI	GCNGC	2 cut(s)	618, 786
Sau3AI	GATC	2 cut(s)	508, 838
Sau96I	GGNCC	2 cut(s)	488, 662
SchI	GAGTC	2 cut(s)	457, 548
ScrFI	CCNGG	1 cut(s)	310
SduI	GDGCHC	1 cut(s)	852
SfaNI	GCATC	2 cut(s)	598, 805
SfcI	CTRYAG	1 cut(s)	765
SinI	GGWCC	1 cut(s)	662
SmiMI	CAYNNNNRTG	2 cut(s)	277, 569
Sse9I	AATT	4 cut(s)	341, 524, 650, 680
SseBI	AGGCCT	1 cut(s)	370
SsiI	CCGC	1 cut(s)	878
StuI	AGGCCT	1 cut(s)	370
StyD4I	CCNGG	1 cut(s)	308
TaaI	ACNGT	1 cut(s)	498
TaiI	ACGT	3 cut(s)	75, 838, 855
TaqI	TCGA	4 cut(s)	64, 136, 246, 471
TasI	AATT	4 cut(s)	341, 524, 650, 680
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	354
Tru9I	TTAA	1 cut(s)	354
TscAI	CASTG	2 cut(s)	423, 501
TseI	GCWGC	2 cut(s)	617, 785
TspDTI	ATGAA	3 cut(s)	36, 72, 703
TspRI	CASTG	2 cut(s)	423, 501
VneI	GTGCAC	1 cut(s)	848
VpaK11BI	GGWCC	1 cut(s)	662
VspI	ATTAAT	1 cut(s)	354
XapI	RAATTY	2 cut(s)	524, 650
XceI	RCATGY	1 cut(s)	282
XmiI	GTMKAC	1 cut(s)	393
XmnI	GAANNNNTTC	2 cut(s)	345, 723

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.