Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004547

Physical Location & Seq

Genomic Coordinates Reverse (-)

54520472 .. 54522876

Gene Structure 2405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG319300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGACTAGTTTGAAAGTGAGTTTCAGAGGCACTGCTCTTCCTTCTTCATCACCTCAAACTTCCCGGCATCACTTTTCAGATTCAGTCACTTTTTCTCTCCCCAAGAAATCAGTGATAGCCAAGTTTCCAAACACCACTATACCATGTCATCCTAAGCTTCGTCTTCAAGCTTCTTTTGGGAAGAAGACCAGAGCTTCAGTCTCTGCAATAGTGGCAACTGGTGTGCAAGAGGTTCTTCCACCAGCTCTTACTAACAGCTCGGTCCCACCTACACTCTTTGATGGGAAAACAAGGTTGTATGTGTCTTACACATGCCCATTTGCTCAGCGCGCATGGATTGTCCGGAATTGTAAGGGATTGGAGGAGAAGATAGAATTGGTTCCTCTTGATCTGCTAGACAGGCCTTCTTGGTACAAAGAAAAAATTAACTCTACTAACAAGGTGCCATCACTGGAACACAATAACGAAATCAAAGTAGAGAGTCTTGATTTGATTAGGTATATCGACAGTAACTTTGAAGGGCCTTCACTGTTCCCTGATGAACCTGCAAAGAGAGAATTTGCAGAAGAGTTGTTTTCCTACACCGACTCCTTCAACACATCTGTGTTTTCGTTTTTCAAAGGAGATGGAACTGAGGCAGATGCTGGTGCTGCATTTGACTATATTGAAACTGCTCTCTCGAAATTTGAAGATGGACCTTTCTTTCTTGGCCAATTCAGTCTGGTGGATATAGCTTATGCTCCATTCATTGAAAGATTTCAGCCTTTTGCATTGGATGTGAAGAAGTTTGACATAACTGCAGGCAGACCTAGACTGGCAGCATGGATTGAGGAGACGGACAAAAACGATGCTTACAATAGAACCCGACGTGATCCTAAAGTGCACGTTGAAATCTACAAGAAACGCTTTCCGCCTCGGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010731 GO:0016740 GO:0016765 GO:0019538 GO:0034641 GO:0036211 GO:0043170 GO:0043412 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0051186 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C_2 GST_N_3

Protein Analysis

307

Amino Acids

34.69

Weight (kDa)

8.59

Isoelectric Point (pI)

45.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	99 - 175	1e-18	Glutathione S-transferase, N-terminal domain
GST_N_2	PF13409	104 - 170	1e-14	Glutathione S-transferase, N-terminal domain
GST_C_2	PF13410	216 - 277	2e-11	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004547)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g20610 FvH4_7g20620 FvH4_7g20620
malus_domestica	MD01G1115000.v1.1 MD07G1183000.v1.1
prunus_persica	Prupe.2G221700_v2.0.a1 Prupe.2G221700_v2.0.a1
pyrus_communis	pycom01g14390
rosa_chinensis	RchiOBHm_Chr1g0364651 RchiOBHm_Chr1g0364661
rosa_laevigata	RLG00000027469
rosa_multiflora	Rmu_sc0024218.1_g000001 Rmu_ssc0000112.1_g000036 Rmu_ssc0000112.1_g000037 Rmu_ssc0000282.1_g000016
rosa_roxburghii	Rroxscaffold_1G00029240 Rroxscaffold_4G00291770 Rroxscaffold_4G00292190 Rroxscaffold_7G00185900 Rroxscaffold_7G00191070 Rroxscaffold_7G00191090 Rroxscaffold_7G00197330
rosa_rugosa	Rorug01G0317400
rosa_samantha	Rh1AG326400 Rh1AG326500 Rh1BG287600 Rh1BG287700 Rh1CG304400 Rh1CG304500 Rh1DG319300 Rh1DG319400
rosa_wichuraiana	Rw1G028920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	553
AccB1I	GGYRCC	1 cut(s)	442
AccII	CGCG	1 cut(s)	330
AccIII	TCCGGA	1 cut(s)	342
AciI	CCGC	1 cut(s)	911
AclWI	GGATC	1 cut(s)	866
AcoI	YGGCCR	1 cut(s)	709
AcsI	RAATTY	2 cut(s)	557, 683
AcuI	CTGAAG	1 cut(s)	180
AfaI	GTAC	1 cut(s)	413
AgsI	TTSAA	9 cut(s)	13, 167, 518, 595, 619, 668, 689, 752, 890
AhlI	ACTAGT	1 cut(s)	5
AjiI	CACGTC	1 cut(s)	869
AjuI	GAANNNNNNNTTGG	2 cut(s)	359, 391
AleI	CACNNNNGTG	1 cut(s)	602
AluBI	AGCT	6 cut(s)	157, 170, 194, 245, 258, 734
AluI	AGCT	6 cut(s)	157, 170, 194, 245, 258, 734
Alw21I	GWGCWC	1 cut(s)	885
Alw26I	GTCTC	2 cut(s)	205, 827
Alw44I	GTGCAC	1 cut(s)	881
AlwI	GGATC	1 cut(s)	866
AlwNI	CAGNNNCTG	2 cut(s)	203, 644
Ama87I	CYCGRG	1 cut(s)	915
Aor13HI	TCCGGA	1 cut(s)	342
AoxI	GGCC	3 cut(s)	401, 521, 709
ApaLI	GTGCAC	1 cut(s)	881
ApeKI	GCWGC	2 cut(s)	650, 818
ApoI	RAATTY	2 cut(s)	557, 683
ArsI	GACNNNNNNTTYG	2 cut(s)	497, 529
Asp700I	GAANNNNTTC	2 cut(s)	378, 756
AspLEI	GCGC	2 cut(s)	330, 332
AspS9I	GGNCC	3 cut(s)	262, 521, 695
AsuC2I	CCSGG	1 cut(s)	64
AsuHPI	GGTGA	1 cut(s)	42
AvaI	CYCGRG	1 cut(s)	915
AvaII	GGWCC	2 cut(s)	262, 695
BaeGI	GKGCMC	1 cut(s)	885
BalI	TGGCCA	1 cut(s)	711
BanI	GGYRCC	1 cut(s)	442
BbsI	GAAGAC	2 cut(s)	155, 191
Bbv12I	GWGCWC	1 cut(s)	885
BbvI	GCAGC	2 cut(s)	637, 830
BccI	CCATC	4 cut(s)	275, 454, 620, 686
BcnI	CCSGG	1 cut(s)	64
BcoDI	GTCTC	2 cut(s)	205, 827
BcuI	ACTAGT	1 cut(s)	5
BfaI	CTAG	3 cut(s)	6, 395, 810
BfmI	CTRYAG	1 cut(s)	798
BfuAI	ACCTGC	1 cut(s)	553
BisI	GCNGC	2 cut(s)	651, 819
BlpI	GCTNAGC	1 cut(s)	324
BlsI	GCNGC	2 cut(s)	652, 820
Bme1390I	CCNGG	1 cut(s)	64
Bme18I	GGWCC	2 cut(s)	262, 695
BmeT110I	CYCGRG	1 cut(s)	915
BmgBI	CACGTC	1 cut(s)	869
BmgT120I	GGNCC	3 cut(s)	262, 521, 695
BmiI	GGNNCC	3 cut(s)	264, 381, 444
BmrFI	CCNGG	1 cut(s)	64
BmsI	GCATC	3 cut(s)	76, 631, 838
BpiI	GAAGAC	2 cut(s)	155, 191
Bpu10I	CCTNAGC	1 cut(s)	153
Bpu1102I	GCTNAGC	1 cut(s)	324
BpuMI	CCSGG	1 cut(s)	64
BsaJI	CCNNGG	1 cut(s)	914
BsaWI	WCCGGW	1 cut(s)	342
BsaXI	ACNNNNNCTCC	2 cut(s)	572, 602
Bse1I	ACTGG	3 cut(s)	223, 456, 819
BseAI	TCCGGA	1 cut(s)	342
BseDI	CCNNGG	1 cut(s)	914
BseGI	GGATG	2 cut(s)	148, 781
BseMII	CTCAG	2 cut(s)	338, 624
BseNI	ACTGG	3 cut(s)	223, 456, 819
BsePI	GCGCGC	1 cut(s)	328
BseRI	GAGGAG	2 cut(s)	377, 845
BseSI	GKGCMC	1 cut(s)	885
BseXI	GCAGC	2 cut(s)	637, 830
Bsh1236I	CGCG	1 cut(s)	330
BshFI	GGCC	3 cut(s)	403, 523, 711
BshNI	GGYRCC	1 cut(s)	442
BsiHKAI	GWGCWC	1 cut(s)	885
BsiHKCI	CYCGRG	1 cut(s)	915
BsiSI	CCGG	2 cut(s)	64, 343
BslFI	GGGAC	1 cut(s)	248
BsmAI	GTCTC	2 cut(s)	205, 827
BsmBI	CGTCTC	1 cut(s)	827
BsmFI	GGGAC	1 cut(s)	248
BsnI	GGCC	3 cut(s)	403, 523, 711
BsoBI	CYCGRG	1 cut(s)	915
Bsp1286I	GDGCHC	1 cut(s)	885
Bsp13I	TCCGGA	1 cut(s)	342
Bsp143I	GATC	2 cut(s)	388, 871
Bsp1720I	GCTNAGC	1 cut(s)	324
BspACI	CCGC	1 cut(s)	911
BspANI	GGCC	3 cut(s)	403, 523, 711
BspCNI	CTCAG	2 cut(s)	337, 625
BspEI	TCCGGA	1 cut(s)	342
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	3 cut(s)	264, 381, 444
BspMAI	CTGCAG	1 cut(s)	802
BspMI	ACCTGC	1 cut(s)	553
BspPI	GGATC	1 cut(s)	866
BspQI	GCTCTTC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	442
BsrI	ACTGG	3 cut(s)	223, 456, 819
BssECI	CCNNGG	1 cut(s)	914
BssHII	GCGCGC	1 cut(s)	328
BssMI	GATC	2 cut(s)	388, 871
Bst4CI	ACNGT	2 cut(s)	509, 531
Bst6I	CTCTTC	2 cut(s)	42, 561
BstC8I	GCNNGC	2 cut(s)	330, 802
BstDEI	CTNAG	3 cut(s)	153, 324, 633
BstF5I	GGATG	2 cut(s)	148, 781
BstFNI	CGCG	1 cut(s)	330
BstHHI	GCGC	2 cut(s)	330, 332
BstKTI	GATC	2 cut(s)	391, 874
BstMAI	GTCTC	2 cut(s)	205, 827
BstMBI	GATC	2 cut(s)	388, 871
BstMWI	GCNNNNNNNGC	4 cut(s)	212, 329, 400, 650
BstNSI	RCATGY	1 cut(s)	315
BstSCI	CCNGG	1 cut(s)	62
BstSFI	CTRYAG	1 cut(s)	798
BstSLI	GKGCMC	1 cut(s)	885
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	2 cut(s)	637, 830
BstV2I	GAAGAC	2 cut(s)	155, 191
BsuRI	GGCC	3 cut(s)	403, 523, 711
BtrI	CACGTC	1 cut(s)	869
BtsCI	GGATG	2 cut(s)	148, 781
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	4 cut(s)	30, 117, 449, 527
BveI	ACCTGC	1 cut(s)	553
Cac8I	GCNNGC	2 cut(s)	330, 802
CaiI	CAGNNNCTG	2 cut(s)	203, 644
CfoI	GCGC	2 cut(s)	330, 332
Cfr13I	GGNCC	3 cut(s)	262, 521, 695
Csp6I	GTAC	1 cut(s)	412
CviAII	CATG	4 cut(s)	144, 312, 333, 822
CviQI	GTAC	1 cut(s)	412
DdeI	CTNAG	3 cut(s)	153, 324, 633
DpnI	GATC	2 cut(s)	390, 873
DpnII	GATC	2 cut(s)	388, 871
EaeI	YGGCCR	1 cut(s)	709
Eam1104I	CTCTTC	2 cut(s)	42, 561
EarI	CTCTTC	2 cut(s)	42, 561
EciI	GGCGGA	1 cut(s)	900
Eco147I	AGGCCT	1 cut(s)	403
Eco47I	GGWCC	2 cut(s)	262, 695
Eco57I	CTGAAG	1 cut(s)	180
Eco88I	CYCGRG	1 cut(s)	915
EcoO109I	RGGNCCY	1 cut(s)	521
Esp3I	CGTCTC	1 cut(s)	827
FaeI	CATG	4 cut(s)	147, 315, 336, 825
FalI	AAGNNNNNCTT	4 cut(s)	219, 251, 890, 922
FaqI	GGGAC	1 cut(s)	248
FatI	CATG	4 cut(s)	143, 311, 332, 821
Fnu4HI	GCNGC	2 cut(s)	651, 819
FokI	GGATG	2 cut(s)	135, 788
Fsp4HI	GCNGC	2 cut(s)	651, 819
FspBI	CTAG	3 cut(s)	6, 395, 810
GlaI	GCGC	2 cut(s)	329, 331
GluI	GCNGC	2 cut(s)	651, 819
HaeIII	GGCC	3 cut(s)	403, 523, 711
HapII	CCGG	2 cut(s)	64, 343
HhaI	GCGC	2 cut(s)	330, 332
Hin1II	CATG	4 cut(s)	147, 315, 336, 825
Hin6I	GCGC	2 cut(s)	328, 330
HinP1I	GCGC	2 cut(s)	328, 330
HindIII	AAGCTT	2 cut(s)	155, 168
HinfI	GANTC	3 cut(s)	80, 481, 587
HpaII	CCGG	2 cut(s)	64, 343
HphI	GGTGA	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	883
Hpy188I	TCNGA	3 cut(s)	26, 79, 923
Hpy188III	TCNNGA	4 cut(s)	343, 386, 485, 679
Hpy8I	GTNNAC	1 cut(s)	883
Hpy99I	CGWCG	1 cut(s)	870
HpyAV	CCTTC	5 cut(s)	51, 414, 512, 534, 601
HpyCH4III	ACNGT	2 cut(s)	509, 531
HpyCH4IV	ACGT	2 cut(s)	868, 885
HpyCH4V	TGCA	8 cut(s)	206, 226, 548, 563, 653, 770, 800, 883
HpyF10VI	GCNNNNNNNGC	4 cut(s)	212, 329, 400, 650
HpyF3I	CTNAG	3 cut(s)	153, 324, 633
HpySE526I	ACGT	2 cut(s)	868, 885
Hsp92II	CATG	4 cut(s)	147, 315, 336, 825
HspAI	GCGC	2 cut(s)	328, 330
Kpn2I	TCCGGA	1 cut(s)	342
Kzo9I	GATC	2 cut(s)	388, 871
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	1 cut(s)	745
Lsp1109I	GCAGC	2 cut(s)	637, 830
LweI	GCATC	3 cut(s)	76, 631, 838
MaeI	CTAG	3 cut(s)	6, 395, 810
MaeII	ACGT	2 cut(s)	868, 885
MaeIII	GTNAC	2 cut(s)	85, 509
MalI	GATC	2 cut(s)	390, 873
MboI	GATC	2 cut(s)	388, 871
MhlI	GDGCHC	1 cut(s)	885
MlsI	TGGCCA	1 cut(s)	711
MluCI	AATT	6 cut(s)	346, 374, 423, 557, 683, 713
MluNI	TGGCCA	1 cut(s)	711
MlyI	GAGTC	2 cut(s)	490, 581
MnlI	CCTC	8 cut(s)	20, 63, 223, 355, 393, 628, 823, 924
Mox20I	TGGCCA	1 cut(s)	711
MroI	TCCGGA	1 cut(s)	342
MroXI	GAANNNNTTC	2 cut(s)	378, 756
MscI	TGGCCA	1 cut(s)	711
MseI	TTAA	1 cut(s)	426
MslI	CAYNNNNRTG	1 cut(s)	602
Msp20I	TGGCCA	1 cut(s)	711
MspI	CCGG	2 cut(s)	64, 343
MspR9I	CCNGG	1 cut(s)	64
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	4 cut(s)	212, 329, 400, 650
NciI	CCSGG	1 cut(s)	64
NdeII	GATC	2 cut(s)	388, 871
NlaIII	CATG	4 cut(s)	147, 315, 336, 825
NlaIV	GGNNCC	3 cut(s)	264, 381, 444
NmuCI	GTSAC	1 cut(s)	85
NspI	RCATGY	1 cut(s)	315
OliI	CACNNNNGTG	1 cut(s)	602
PauI	GCGCGC	1 cut(s)	328
PceI	AGGCCT	1 cut(s)	403
PciSI	GCTCTTC	1 cut(s)	42
PdmI	GAANNNNTTC	2 cut(s)	378, 756
PfeI	GAWTC	1 cut(s)	80
PkrI	GCNGC	2 cut(s)	652, 820
PleI	GAGTC	2 cut(s)	489, 581
PpsI	GAGTC	2 cut(s)	489, 581
PspN4I	GGNNCC	3 cut(s)	264, 381, 444
PspPI	GGNCC	3 cut(s)	262, 521, 695
PstI	CTGCAG	1 cut(s)	802
PstNI	CAGNNNCTG	2 cut(s)	203, 644
PteI	GCGCGC	1 cut(s)	328
RsaI	GTAC	1 cut(s)	413
RsaNI	GTAC	1 cut(s)	412
RseI	CAYNNNNRTG	1 cut(s)	602
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	1 cut(s)	426
SatI	GCNGC	2 cut(s)	651, 819
Sau3AI	GATC	2 cut(s)	388, 871
Sau96I	GGNCC	3 cut(s)	262, 521, 695
SchI	GAGTC	2 cut(s)	490, 581
ScrFI	CCNGG	1 cut(s)	64
SduI	GDGCHC	1 cut(s)	885
SfaNI	GCATC	3 cut(s)	76, 631, 838
SfcI	CTRYAG	1 cut(s)	798
SinI	GGWCC	2 cut(s)	262, 695
SmiMI	CAYNNNNRTG	1 cut(s)	602
SpeI	ACTAGT	1 cut(s)	5
Sse9I	AATT	6 cut(s)	346, 374, 423, 557, 683, 713
SseBI	AGGCCT	1 cut(s)	403
SsiI	CCGC	1 cut(s)	911
SspMI	CTAG	3 cut(s)	6, 395, 810
StuI	AGGCCT	1 cut(s)	403
StyD4I	CCNGG	1 cut(s)	62
TaaI	ACNGT	2 cut(s)	509, 531
TaiI	ACGT	2 cut(s)	871, 888
TaqI	TCGA	2 cut(s)	504, 680
TaqII	GACCGA	1 cut(s)	250
TasI	AATT	6 cut(s)	346, 374, 423, 557, 683, 713
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
TscAI	CASTG	4 cut(s)	37, 117, 456, 534
TseFI	GTSAC	1 cut(s)	85
TseI	GCWGC	2 cut(s)	650, 818
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	3 cut(s)	36, 555, 736
TspGWI	ACGGA	1 cut(s)	851
TspRI	CASTG	4 cut(s)	37, 117, 456, 534
VneI	GTGCAC	1 cut(s)	881
VpaK11BI	GGWCC	2 cut(s)	262, 695
XapI	RAATTY	2 cut(s)	557, 683
XceI	RCATGY	1 cut(s)	315
XmnI	GAANNNNTTC	2 cut(s)	378, 756
XspI	CTAG	3 cut(s)	6, 395, 810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.