Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003832

Physical Location & Seq

Genomic Coordinates Reverse (-)

20462858 .. 20464215

Gene Structure 1358 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27331.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 486 bp

ATGGTGATTGAAGAGCTGGATGAGAAAAAGAAGGAAACATTGAATGTTACTTGGGTCAAAGTTAACAAAGACTTACGGTCTATCTTTTCTACCCTTTTACCCGGCACAATGGGAAAGCTTGAACCTCCTGAAGGGTGTAGTTTCCTAGATGGCCTTGAGGTGTGTGTTGCATTTGGGGGTGATTGGAAACAGTCTTTGTCAGAACTGAGTGGAGGTCAGCGATCCCTGCTGGCACTTTCTCTGATCTTGGCATTGCTTCTCTTCAAACCAGCTCCTCTGTATATACTGGATGAGGTTGATGCAGCTCTTGATCTAAGTCACACCCAGAATATTGGAAGAATGATCAAAAGTCATTTCCCACACTCCCAGTTCATTGTGGTTTCACTGAAAGAAGGCATGTTCAATAATGCTAATGTCCTTTTCCGGACAAAGTTTGTGGATGGAGTTTCAACTGTTCAAAGGACCGTTGCTAAACAAAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0000796 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

162

Amino Acids

17.86

Weight (kDa)

6.83

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_21	PF13304	60 - 128	4.1e-06	AAA domain, putative AbiEii toxin, Type IV TA system
SMC_N	PF02463	68 - 147	2.6e-27	RecF/RecN/SMC N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47460 AT3G47460 AT5G62410
fragaria_vesca	FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g27331 FvH4_7g27350 FvH4_7g27351 FvH4_7g27370 FvH4_7g27601 FvH4_7g27643 FvH4_7g27644 FvH4_7g27690 FvH4_7g28371 FvH4_7g28372 FvH4_7g28800
malus_domestica	MD01G1182300.v1.1 MD07G1252800.v1.1
prunus_persica	Prupe.2G276400_v2.0.a1
pyrus_communis	pycom01g19230 pycom07g22540
rosa_chinensis	RchiOBHm_Chr1g0374201
rosa_laevigata	RLG00000026756
rosa_multiflora	Rmu_co8310535.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283650
rosa_rugosa	Rorug01G0381300
rosa_samantha	Rh1AG392300 Rh1BG356300 Rh1CG369300 Rh1DG386800
rosa_wichuraiana	Rw1G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	423
AclWI	GGATC	1 cut(s)	216
AcuI	CTGAAG	1 cut(s)	150
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	7 cut(s)	11, 43, 122, 265, 403, 450, 458
AhdI	GACNNNNNGTC	1 cut(s)	76
AluBI	AGCT	4 cut(s)	16, 118, 272, 305
AluI	AGCT	4 cut(s)	16, 118, 272, 305
AlwI	GGATC	1 cut(s)	216
Aor13HI	TCCGGA	1 cut(s)	423
AoxI	GGCC	1 cut(s)	151
ApeKI	GCWGC	1 cut(s)	302
AspS9I	GGNCC	1 cut(s)	462
AsuC2I	CCSGG	1 cut(s)	102
AsuHPI	GGTGA	2 cut(s)	16, 191
AvaII	GGWCC	1 cut(s)	462
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	2 cut(s)	143, 434
BclI	TGATCA	1 cut(s)	342
BcnI	CCSGG	1 cut(s)	102
BfaI	CTAG	1 cut(s)	146
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	1 cut(s)	102
Bme18I	GGWCC	1 cut(s)	462
BmeRI	GACNNNNNGTC	1 cut(s)	76
BmgT120I	GGNCC	1 cut(s)	462
BmrFI	CCNGG	1 cut(s)	102
BmrI	ACTGGG	1 cut(s)	361
BmsI	GCATC	1 cut(s)	289
BmuI	ACTGGG	1 cut(s)	361
BpuEI	CTTGAG	1 cut(s)	176
BpuMI	CCSGG	1 cut(s)	102
BsaWI	WCCGGW	1 cut(s)	423
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse1I	ACTGG	2 cut(s)	291, 367
Bse3DI	GCAATG	1 cut(s)	251
BseAI	TCCGGA	1 cut(s)	423
BseGI	GGATG	3 cut(s)	25, 295, 445
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMI	GCAATG	1 cut(s)	251
BseMII	CTCAG	1 cut(s)	197
BseNI	ACTGG	2 cut(s)	291, 367
BseRI	GAGGAG	1 cut(s)	264
BseXI	GCAGC	1 cut(s)	314
BshFI	GGCC	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	102, 424
BslI	CCNNNNNNNGG	1 cut(s)	131
BsnI	GGCC	1 cut(s)	153
Bsp13I	TCCGGA	1 cut(s)	423
Bsp143I	GATC	4 cut(s)	221, 243, 310, 342
BspANI	GGCC	1 cut(s)	153
BspCNI	CTCAG	1 cut(s)	198
BspEI	TCCGGA	1 cut(s)	423
BspPI	GGATC	1 cut(s)	216
BspQI	GCTCTTC	1 cut(s)	6
BsrDI	GCAATG	1 cut(s)	251
BsrI	ACTGG	2 cut(s)	291, 367
BssMI	GATC	4 cut(s)	221, 243, 310, 342
Bst4CI	ACNGT	4 cut(s)	78, 192, 454, 466
Bst6I	CTCTTC	2 cut(s)	6, 266
BstC8I	GCNNGC	1 cut(s)	231
BstDEI	CTNAG	2 cut(s)	206, 314
BstENI	CCTNNNNNAGG	1 cut(s)	129
BstF5I	GGATG	3 cut(s)	25, 295, 445
BstKTI	GATC	4 cut(s)	224, 246, 313, 345
BstMBI	GATC	4 cut(s)	221, 243, 310, 342
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstNSI	RCATGY	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	314
BstXI	CCANNNNNNTGG	1 cut(s)	332
BsuRI	GGCC	1 cut(s)	153
BtsCI	GGATG	3 cut(s)	25, 295, 445
BtsIMutI	CAGTG	1 cut(s)	383
Cac8I	GCNNGC	1 cut(s)	231
Cfr13I	GGNCC	1 cut(s)	462
CspCI	CAANNNNNGTGG	2 cut(s)	417, 452
CviAII	CATG	1 cut(s)	397
CviJI	RGCY	5 cut(s)	16, 118, 153, 272, 305
CviKI_1	RGCY	5 cut(s)	16, 118, 153, 272, 305
DdeI	CTNAG	2 cut(s)	206, 314
DpnI	GATC	4 cut(s)	223, 245, 312, 344
DpnII	GATC	4 cut(s)	221, 243, 310, 342
DriI	GACNNNNNGTC	1 cut(s)	76
Eam1104I	CTCTTC	2 cut(s)	6, 266
Eam1105I	GACNNNNNGTC	1 cut(s)	76
EarI	CTCTTC	2 cut(s)	6, 266
Eco47I	GGWCC	1 cut(s)	462
Eco57I	CTGAAG	1 cut(s)	150
EcoNI	CCTNNNNNAGG	1 cut(s)	129
FaeI	CATG	1 cut(s)	400
FaiI	YATR	3 cut(s)	282, 284, 398
FatI	CATG	1 cut(s)	396
FbaI	TGATCA	1 cut(s)	342
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	3 cut(s)	32, 302, 452
Fsp4HI	GCNGC	1 cut(s)	303
FspBI	CTAG	1 cut(s)	146
GluI	GCNGC	1 cut(s)	303
HaeIII	GGCC	1 cut(s)	153
HapII	CCGG	2 cut(s)	102, 424
Hin1II	CATG	1 cut(s)	400
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HindIII	AAGCTT	1 cut(s)	116
HpaI	GTTAAC	1 cut(s)	64
HpaII	CCGG	2 cut(s)	102, 424
HphI	GGTGA	2 cut(s)	16, 191
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188I	TCNGA	2 cut(s)	202, 243
Hpy188III	TCNNGA	3 cut(s)	128, 308, 424
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	3 cut(s)	25, 125, 386
HpyCH4III	ACNGT	4 cut(s)	78, 192, 454, 466
HpyCH4V	TGCA	2 cut(s)	170, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HpyF3I	CTNAG	2 cut(s)	206, 314
Hsp92II	CATG	1 cut(s)	400
Kpn2I	TCCGGA	1 cut(s)	423
Ksp22I	TGATCA	1 cut(s)	342
KspAI	GTTAAC	1 cut(s)	64
Kzo9I	GATC	4 cut(s)	221, 243, 310, 342
LguI	GCTCTTC	1 cut(s)	6
LmnI	GCTCC	1 cut(s)	277
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	1 cut(s)	289
MaeI	CTAG	1 cut(s)	146
MaeIII	GTNAC	2 cut(s)	46, 317
MalI	GATC	4 cut(s)	223, 245, 312, 344
MboI	GATC	4 cut(s)	221, 243, 310, 342
MboII	GAAGA	3 cut(s)	23, 253, 348
MnlI	CCTC	5 cut(s)	135, 151, 206, 285, 286
MroI	TCCGGA	1 cut(s)	423
MseI	TTAA	1 cut(s)	63
MspI	CCGG	2 cut(s)	102, 424
MspR9I	CCNGG	1 cut(s)	102
MwoI	GCNNNNNNNGC	1 cut(s)	226
NciI	CCSGG	1 cut(s)	102
NdeII	GATC	4 cut(s)	221, 243, 310, 342
NlaIII	CATG	1 cut(s)	400
NmuCI	GTSAC	1 cut(s)	317
NspI	RCATGY	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	6
PkrI	GCNGC	1 cut(s)	304
PspPI	GGNCC	1 cut(s)	462
SapI	GCTCTTC	1 cut(s)	6
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	4 cut(s)	221, 243, 310, 342
Sau96I	GGNCC	1 cut(s)	462
ScrFI	CCNGG	1 cut(s)	102
SetI	ASST	8 cut(s)	18, 120, 127, 162, 217, 274, 297, 307
SfaNI	GCATC	1 cut(s)	289
SinI	GGWCC	1 cut(s)	462
SmlI	CTYRAG	1 cut(s)	155
SmoI	CTYRAG	1 cut(s)	155
SspI	AATATT	1 cut(s)	331
SspMI	CTAG	1 cut(s)	146
StyD4I	CCNGG	1 cut(s)	100
TaaI	ACNGT	4 cut(s)	78, 192, 454, 466
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	390
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	361
TspRI	CASTG	1 cut(s)	390
VpaK11BI	GGWCC	1 cut(s)	462
XagI	CCTNNNNNAGG	1 cut(s)	129
XceI	RCATGY	1 cut(s)	400
XspI	CTAG	1 cut(s)	146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.