Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8310535.1

Orthogroup ID

OG0003832

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 329

Gene Structure 329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8310535.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

atgtacatcaaggaggtgaccttagaagggttcaagtcgtacgcgacgcggacggtggtgccgggattcgacccgtttttcaacgccataaccgggctaaacgggtcgggtaagtccaacattctcgattcgatttgcttcgttctcggcatcaccaacttacagcaagtccgggcggccaatctgcaagagctagtgtacaagcaaggccaggccggaattactaaggccaccgtctccatcgtcttcgacaattcggaccgggctcgcagtcctctcgggtacgaggcccattccgaactcaccgtcacccggcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0000796 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

106

Amino Acids

11.59

Weight (kDa)

7.87

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47460 AT3G47460 AT5G62410
fragaria_vesca	FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g27331 FvH4_7g27350 FvH4_7g27351 FvH4_7g27370 FvH4_7g27601 FvH4_7g27643 FvH4_7g27644 FvH4_7g27690 FvH4_7g28371 FvH4_7g28372 FvH4_7g28800
malus_domestica	MD01G1182300.v1.1 MD07G1252800.v1.1
prunus_persica	Prupe.2G276400_v2.0.a1
pyrus_communis	pycom01g19230 pycom07g22540
rosa_chinensis	RchiOBHm_Chr1g0374201
rosa_laevigata	RLG00000026756
rosa_multiflora	Rmu_co8310535.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283650
rosa_rugosa	Rorug01G0381300
rosa_samantha	Rh1AG392300 Rh1BG356300 Rh1CG369300 Rh1DG386800
rosa_wichuraiana	Rw1G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	58
AccII	CGCG	2 cut(s)	44, 49
AciI	CCGC	2 cut(s)	49, 176
AcoI	YGGCCR	1 cut(s)	177
AfaI	GTAC	4 cut(s)	5, 41, 200, 284
AfiI	CCNNNNNNNGG	3 cut(s)	27, 93, 312
AgsI	TTSAA	2 cut(s)	34, 82
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	241
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	5 cut(s)	177, 208, 213, 228, 288
ArsI	GACNNNNNNTTYG	1 cut(s)	291
AspS9I	GGNCC	2 cut(s)	259, 289
AsuC2I	CCSGG	5 cut(s)	63, 94, 173, 263, 313
AsuHPI	GGTGA	4 cut(s)	28, 145, 295, 301
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	1 cut(s)	259
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	268
BbsI	GAAGAC	1 cut(s)	238
BccI	CCATC	1 cut(s)	248
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciT130I	CCWGG	1 cut(s)	212
BcnI	CCSGG	5 cut(s)	63, 94, 173, 263, 313
BcoDI	GTCTC	1 cut(s)	241
BfaI	CTAG	1 cut(s)	194
BisI	GCNGC	1 cut(s)	177
BlsI	GCNGC	1 cut(s)	178
Bme1390I	CCNGG	6 cut(s)	63, 94, 173, 212, 263, 313
Bme18I	GGWCC	1 cut(s)	259
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	259, 289
BmiI	GGNNCC	1 cut(s)	60
BmrFI	CCNGG	6 cut(s)	63, 94, 173, 212, 263, 313
BmsI	GCATC	1 cut(s)	159
BpiI	GAAGAC	1 cut(s)	238
BpuMI	CCSGG	5 cut(s)	63, 94, 173, 263, 313
Bsc4I	CCNNNNNNNGG	3 cut(s)	27, 93, 312
BseBI	CCWGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	3 cut(s)	27, 93, 312
Bsh1236I	CGCG	2 cut(s)	44, 49
BshFI	GGCC	5 cut(s)	179, 210, 215, 230, 290
BshNI	GGYRCC	1 cut(s)	58
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	6 cut(s)	62, 93, 172, 216, 262, 313
BsiWI	CGTACG	1 cut(s)	39
BslI	CCNNNNNNNGG	3 cut(s)	27, 93, 312
BsmAI	GTCTC	1 cut(s)	241
BsmBI	CGTCTC	1 cut(s)	241
BsnI	GGCC	5 cut(s)	179, 210, 215, 230, 290
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	268
Bsp1407I	TGTACA	2 cut(s)	3, 198
BspACI	CCGC	2 cut(s)	49, 176
BspANI	GGCC	5 cut(s)	179, 210, 215, 230, 290
BspFNI	CGCG	2 cut(s)	44, 49
BspLI	GGNNCC	1 cut(s)	60
BspT107I	GGYRCC	1 cut(s)	58
BsrGI	TGTACA	2 cut(s)	3, 198
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	3 cut(s)	55, 235, 307
BstAUI	TGTACA	2 cut(s)	3, 198
BstC8I	GCNNGC	1 cut(s)	268
BstDEI	CTNAG	2 cut(s)	22, 225
BstEII	GGTNACC	1 cut(s)	16
BstFNI	CGCG	2 cut(s)	44, 49
BstMAI	GTCTC	1 cut(s)	241
BstNI	CCWGG	1 cut(s)	212
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	6 cut(s)	61, 92, 171, 210, 261, 311
BstUI	CGCG	2 cut(s)	44, 49
BstV2I	GAAGAC	1 cut(s)	238
BsuRI	GGCC	5 cut(s)	179, 210, 215, 230, 290
Cac8I	GCNNGC	1 cut(s)	268
Cfr13I	GGNCC	2 cut(s)	259, 289
CpoI	CGGWCCG	1 cut(s)	259
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	4 cut(s)	4, 40, 199, 283
CspI	CGGWCCG	1 cut(s)	259
CviJI	RGCY	8 cut(s)	97, 179, 193, 210, 215, 230, 266, 290
CviKI_1	RGCY	8 cut(s)	97, 179, 193, 210, 215, 230, 266, 290
CviQI	GTAC	4 cut(s)	4, 40, 199, 283
DdeI	CTNAG	2 cut(s)	22, 225
EaeI	YGGCCR	1 cut(s)	177
Eco24I	GRGCYC	1 cut(s)	268
Eco47I	GGWCC	1 cut(s)	259
Eco88I	CYCGRG	1 cut(s)	278
Eco91I	GGTNACC	1 cut(s)	16
EcoO65I	GGTNACC	1 cut(s)	16
EcoRII	CCWGG	1 cut(s)	210
EcoT38I	GRGCYC	1 cut(s)	268
Esp3I	CGTCTC	1 cut(s)	241
FaiI	YATR	1 cut(s)	89
Fnu4HI	GCNGC	1 cut(s)	177
FriOI	GRGCYC	1 cut(s)	268
Fsp4HI	GCNGC	1 cut(s)	177
FspBI	CTAG	1 cut(s)	194
GluI	GCNGC	1 cut(s)	177
HaeIII	GGCC	5 cut(s)	179, 210, 215, 230, 290
HapII	CCGG	6 cut(s)	62, 93, 172, 216, 262, 313
HgaI	GACGC	1 cut(s)	55
HinfI	GANTC	2 cut(s)	66, 128
HpaII	CCGG	6 cut(s)	62, 93, 172, 216, 262, 313
HphI	GGTGA	4 cut(s)	28, 145, 295, 301
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	2 cut(s)	259, 298
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	1 cut(s)	20
HpyCH4III	ACNGT	3 cut(s)	55, 235, 307
HpyCH4V	TGCA	1 cut(s)	187
HpyF3I	CTNAG	2 cut(s)	22, 225
LpnPI	CCDG	7 cut(s)	75, 106, 185, 197, 224, 229, 275
LweI	GCATC	1 cut(s)	159
MaeI	CTAG	1 cut(s)	194
MaeIII	GTNAC	2 cut(s)	16, 307
MboII	GAAGA	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	268
MluCI	AATT	2 cut(s)	219, 253
MmeI	TCCRAC	1 cut(s)	141
MnlI	CCTC	3 cut(s)	7, 280, 285
MspI	CCGG	6 cut(s)	62, 93, 172, 216, 262, 313
MspR9I	CCNGG	6 cut(s)	63, 94, 173, 212, 263, 313
MvaI	CCWGG	1 cut(s)	212
MvnI	CGCG	2 cut(s)	44, 49
NciI	CCSGG	5 cut(s)	63, 94, 173, 263, 313
NlaIV	GGNNCC	1 cut(s)	60
NmeAIII	GCCGAG	1 cut(s)	126
NmuCI	GTSAC	2 cut(s)	16, 307
PfeI	GAWTC	2 cut(s)	66, 128
Pfl23II	CGTACG	1 cut(s)	39
PkrI	GCNGC	1 cut(s)	178
Psp6I	CCWGG	1 cut(s)	210
PspEI	GGTNACC	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	210
PspLI	CGTACG	1 cut(s)	39
PspN4I	GGNNCC	1 cut(s)	60
PspPI	GGNCC	2 cut(s)	259, 289
RsaI	GTAC	4 cut(s)	5, 41, 200, 284
RsaNI	GTAC	4 cut(s)	4, 40, 199, 283
Rsr2I	CGGWCCG	1 cut(s)	259
RsrII	CGGWCCG	1 cut(s)	259
SatI	GCNGC	1 cut(s)	177
Sau96I	GGNCC	2 cut(s)	259, 289
ScrFI	CCNGG	6 cut(s)	63, 94, 173, 212, 263, 313
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	3 cut(s)	18, 23, 195
SfaNI	GCATC	1 cut(s)	159
SinI	GGWCC	1 cut(s)	259
Sse9I	AATT	2 cut(s)	219, 253
SsiI	CCGC	2 cut(s)	49, 176
SspMI	CTAG	1 cut(s)	194
StyD4I	CCNGG	6 cut(s)	61, 92, 171, 210, 261, 311
TaaI	ACNGT	3 cut(s)	55, 235, 307
TaqI	TCGA	4 cut(s)	69, 126, 131, 249
TasI	AATT	2 cut(s)	219, 253
TatI	WGTACW	2 cut(s)	3, 198
TauI	GCSGC	1 cut(s)	179
TfiI	GAWTC	2 cut(s)	66, 128
TseFI	GTSAC	2 cut(s)	16, 307
Tsp45I	GTSAC	2 cut(s)	16, 307
VpaK11BI	GGWCC	1 cut(s)	259
XspI	CTAG	1 cut(s)	194

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.