Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003832

Physical Location & Seq

Genomic Coordinates Forward (+)

21031923 .. 21033743

Gene Structure 1821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g28372.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGCTGCTGCTAAATTGGTTGGCAAAGGAAAACGCTGAACTTGCCCTTTCTTTGGTTGGCTATGATGAGCAACTGAGGAGTGCTATGGAATATGTCTTCGGTTCAACCTTTGTGTGCAAGACTACTGATGCTGCAAAGGAGGTTGCTTTCAACACGGAAGTTCGTACCCCTAGTGTCACTCTTGAAGGTGATATCTTTCAGCCCAGTGGTCTTTTGACTGGTGGAAGCCGCAAGGGTGGGGGTGATCTGTTAAGGCAGCTTCATGAGCTGGCTGAAGCTGAGCTAAAACTCTCTGAGCATCAGGCTGAACAAAATGAGCATCATAAGCTTGGTGAATTAGTAAAGAGGATTGAGCTAGAGCTACAAGAAGCTCATACTGCAGCCAAAGAAAAGAAACTTTTGCATGAAGATTGTGTGAATAAAGTGTCATTTCTTGAGAAATCAATCAAAGAGCTGGCTGAAAGATTTGGAAAAGAAGATCAAAGTGACAAAGCTCTACTCCAGTCAGCTTCAAAGGATCTCAAGTTCATTGTGGTTTCACTGAAAGAAGGCATGTTCAATAATGCTAATGTCCTTTTCCGGACAAAGTTTGTGGATGGAGTTTCAACTGTTCAAAGGACCGTTGCTAAACAAAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0000796 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

214

Amino Acids

23.79

Weight (kDa)

5.93

Isoelectric Point (pI)

33.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_hinge	PF06470	11 - 49	9.4e-07	SMC proteins Flexible Hinge Domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0003832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47460 AT3G47460 AT5G62410
fragaria_vesca	FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g27331 FvH4_7g27350 FvH4_7g27351 FvH4_7g27370 FvH4_7g27601 FvH4_7g27643 FvH4_7g27644 FvH4_7g27690 FvH4_7g28371 FvH4_7g28372 FvH4_7g28800
malus_domestica	MD01G1182300.v1.1 MD07G1252800.v1.1
prunus_persica	Prupe.2G276400_v2.0.a1
pyrus_communis	pycom01g19230 pycom07g22540
rosa_chinensis	RchiOBHm_Chr1g0374201
rosa_laevigata	RLG00000026756
rosa_multiflora	Rmu_co8310535.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283650
rosa_rugosa	Rorug01G0381300
rosa_samantha	Rh1AG392300 Rh1BG356300 Rh1CG369300 Rh1DG386800
rosa_wichuraiana	Rw1G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	579
AciI	CCGC	1 cut(s)	229
AclWI	GGATC	1 cut(s)	525
AcuI	CTGAAG	1 cut(s)	294
AfaI	GTAC	1 cut(s)	166
AfiI	CCNNNNNNNGG	1 cut(s)	52
AgsI	TTSAA	7 cut(s)	105, 151, 185, 513, 559, 606, 614
AloI	GAACNNNNNNTCC	2 cut(s)	509, 541
AlwI	GGATC	1 cut(s)	525
Aor13HI	TCCGGA	1 cut(s)	579
ApeKI	GCWGC	5 cut(s)	4, 7, 131, 256, 380
AspS9I	GGNCC	1 cut(s)	618
AsuHPI	GGTGA	3 cut(s)	200, 254, 344
AvaII	GGWCC	1 cut(s)	618
BbsI	GAAGAC	1 cut(s)	88
BbvI	GCAGC	3 cut(s)	118, 268, 392
BccI	CCATC	1 cut(s)	590
BfaI	CTAG	2 cut(s)	171, 356
BfmI	CTRYAG	1 cut(s)	378
BisI	GCNGC	6 cut(s)	5, 8, 132, 229, 257, 381
BlpI	GCTNAGC	1 cut(s)	279
BlsI	GCNGC	6 cut(s)	6, 9, 133, 230, 258, 382
Bme18I	GGWCC	1 cut(s)	618
BmgT120I	GGNCC	1 cut(s)	618
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	3 cut(s)	118, 307, 328
BmuI	ACTGGG	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	88
BpmI	CTGGAG	1 cut(s)	485
Bpu1102I	GCTNAGC	1 cut(s)	279
BpuEI	CTTGAG	2 cut(s)	455, 506
BsaWI	WCCGGW	1 cut(s)	579
Bsc4I	CCNNNNNNNGG	1 cut(s)	52
Bse1I	ACTGG	3 cut(s)	204, 223, 502
BseAI	TCCGGA	1 cut(s)	579
BseGI	GGATG	1 cut(s)	601
BseLI	CCNNNNNNNGG	1 cut(s)	52
BseMII	CTCAG	3 cut(s)	65, 270, 285
BseNI	ACTGG	3 cut(s)	204, 223, 502
BseRI	GAGGAG	1 cut(s)	91
BseXI	GCAGC	3 cut(s)	118, 268, 392
BsiSI	CCGG	1 cut(s)	580
BslI	CCNNNNNNNGG	1 cut(s)	52
Bsp13I	TCCGGA	1 cut(s)	579
Bsp143I	GATC	3 cut(s)	244, 478, 517
Bsp1720I	GCTNAGC	1 cut(s)	279
BspACI	CCGC	1 cut(s)	229
BspCNI	CTCAG	3 cut(s)	66, 271, 286
BspEI	TCCGGA	1 cut(s)	579
BspHI	TCATGA	1 cut(s)	262
BspMAI	CTGCAG	1 cut(s)	382
BspPI	GGATC	1 cut(s)	525
BsrI	ACTGG	3 cut(s)	204, 223, 502
BssMI	GATC	3 cut(s)	244, 478, 517
Bst4CI	ACNGT	2 cut(s)	610, 622
BstC8I	GCNNGC	2 cut(s)	270, 456
BstDEI	CTNAG	3 cut(s)	74, 279, 294
BstF5I	GGATG	1 cut(s)	601
BstKTI	GATC	3 cut(s)	247, 481, 520
BstMBI	GATC	3 cut(s)	244, 478, 517
BstMWI	GCNNNNNNNGC	4 cut(s)	41, 265, 325, 377
BstNSI	RCATGY	1 cut(s)	556
BstSFI	CTRYAG	1 cut(s)	378
BstV1I	GCAGC	3 cut(s)	118, 268, 392
BstV2I	GAAGAC	1 cut(s)	88
BstX2I	RGATCY	1 cut(s)	517
BstYI	RGATCY	1 cut(s)	517
BtsCI	GGATG	1 cut(s)	601
BtsIMutI	CAGTG	2 cut(s)	211, 539
Cac8I	GCNNGC	2 cut(s)	270, 456
CciI	TCATGA	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	618
Csp6I	GTAC	1 cut(s)	165
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviAII	CATG	3 cut(s)	263, 404, 553
CviQI	GTAC	1 cut(s)	165
DdeI	CTNAG	3 cut(s)	74, 279, 294
DpnI	GATC	3 cut(s)	246, 480, 519
DpnII	GATC	3 cut(s)	244, 478, 517
Eco32I	GATATC	1 cut(s)	193
Eco47I	GGWCC	1 cut(s)	618
Eco57I	CTGAAG	1 cut(s)	294
EcoRV	GATATC	1 cut(s)	193
FaeI	CATG	3 cut(s)	266, 407, 556
FaiI	YATR	8 cut(s)	63, 86, 93, 264, 324, 375, 405, 554
FatI	CATG	3 cut(s)	262, 403, 552
Fnu4HI	GCNGC	6 cut(s)	5, 8, 132, 229, 257, 381
FokI	GGATG	1 cut(s)	608
Fsp4HI	GCNGC	6 cut(s)	5, 8, 132, 229, 257, 381
FspBI	CTAG	2 cut(s)	171, 356
GluI	GCNGC	6 cut(s)	5, 8, 132, 229, 257, 381
GsuI	CTGGAG	1 cut(s)	485
HapII	CCGG	1 cut(s)	580
Hin1II	CATG	3 cut(s)	266, 407, 556
HindIII	AAGCTT	1 cut(s)	326
HpaII	CCGG	1 cut(s)	580
HphI	GGTGA	3 cut(s)	200, 254, 344
Hpy188I	TCNGA	1 cut(s)	295
Hpy188III	TCNNGA	4 cut(s)	182, 263, 434, 580
HpyAV	CCTTC	2 cut(s)	179, 542
HpyCH4III	ACNGT	2 cut(s)	610, 622
HpyCH4V	TGCA	4 cut(s)	117, 134, 380, 403
HpyF10VI	GCNNNNNNNGC	4 cut(s)	41, 265, 325, 377
HpyF3I	CTNAG	3 cut(s)	74, 279, 294
Hsp92II	CATG	3 cut(s)	266, 407, 556
Kpn2I	TCCGGA	1 cut(s)	579
Kzo9I	GATC	3 cut(s)	244, 478, 517
LpnPI	CCDG	7 cut(s)	204, 217, 254, 287, 440, 515, 593
Lsp1109I	GCAGC	3 cut(s)	118, 268, 392
LweI	GCATC	3 cut(s)	118, 307, 328
MaeI	CTAG	2 cut(s)	171, 356
MaeIII	GTNAC	2 cut(s)	175, 485
MalI	GATC	3 cut(s)	246, 480, 519
MboI	GATC	3 cut(s)	244, 478, 517
MboII	GAAGA	3 cut(s)	88, 419, 488
MflI	RGATCY	1 cut(s)	517
MluCI	AATT	2 cut(s)	13, 335
MnlI	CCTC	3 cut(s)	69, 133, 339
MroI	TCCGGA	1 cut(s)	579
MseI	TTAA	1 cut(s)	251
MspI	CCGG	1 cut(s)	580
MwoI	GCNNNNNNNGC	4 cut(s)	41, 265, 325, 377
NdeII	GATC	3 cut(s)	244, 478, 517
NlaIII	CATG	3 cut(s)	266, 407, 556
NmuCI	GTSAC	2 cut(s)	175, 485
NspI	RCATGY	1 cut(s)	556
PagI	TCATGA	1 cut(s)	262
PkrI	GCNGC	6 cut(s)	6, 9, 133, 230, 258, 382
PspPI	GGNCC	1 cut(s)	618
PstI	CTGCAG	1 cut(s)	382
PsuI	RGATCY	1 cut(s)	517
RsaI	GTAC	1 cut(s)	166
RsaNI	GTAC	1 cut(s)	165
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	6 cut(s)	5, 8, 132, 229, 257, 381
Sau3AI	GATC	3 cut(s)	244, 478, 517
Sau96I	GGNCC	1 cut(s)	618
SfaNI	GCATC	3 cut(s)	118, 307, 328
SfcI	CTRYAG	1 cut(s)	378
SinI	GGWCC	1 cut(s)	618
SmlI	CTYRAG	2 cut(s)	434, 521
SmoI	CTYRAG	2 cut(s)	434, 521
Sse9I	AATT	2 cut(s)	13, 335
SsiI	CCGC	1 cut(s)	229
SspMI	CTAG	2 cut(s)	171, 356
TaaI	ACNGT	2 cut(s)	610, 622
TasI	AATT	2 cut(s)	13, 335
TauI	GCSGC	1 cut(s)	231
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	2 cut(s)	211, 546
TseFI	GTSAC	2 cut(s)	175, 485
TseI	GCWGC	5 cut(s)	4, 7, 131, 256, 380
Tsp45I	GTSAC	2 cut(s)	175, 485
TspDTI	ATGAA	3 cut(s)	251, 420, 517
TspGWI	ACGGA	1 cut(s)	170
TspRI	CASTG	2 cut(s)	211, 546
VpaK11BI	GGWCC	1 cut(s)	618
XceI	RCATGY	1 cut(s)	556
XspI	CTAG	2 cut(s)	171, 356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.