Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003832

Physical Location & Seq

Genomic Coordinates Forward (+)

5531927 .. 5539619

Gene Structure 7693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00283650.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3558 bp

ATGTACATCAAGGAGGTGACCTTGGAAGGGTTCAAGTCGTACGCGACGCGGACGGTGGTTCCTGGATTCGACCCGTTTTTCAACGCCATAACCGGGCTAAACGGGTCGGGTAAGTCCAACATTCTCGATTCGATTTGCTTCGTTCTGGGCATCACCAATTTACAGCAAGTCCGGGCGGCCAATCTGCAAGAGCTAGTGTACAAGCAAGGCCAGGCCGGAATTACTAAGGCCACCGTCTCCATCGTCTTCGACAATTCGGACCGGGCTCGCAGTCCTCTCGGGTACGAGGCCCATTCCGAACTCACCGTCACCCGGCAGATTGTGGTTGGTGGAAGGAACAAGTACTTGATTAATGGGAAACTTGCGCAGCCAAGTCAGGTCCAGAATCTTTTTCATTCGGTGCAGCTCAATGTGAATAATCCGCATTTTCTCATTATGCAAGGCCGGATTACCAAGGTTTTGAATATGAAACCTCCCGAGATTTTGTCTATGCTTGAAGAGGCTGCTGGGACGAGAATGTATGAAACCAAAAAGGAAGCCGCTCTAAAAACACTTGAGAAGAAGCAGAGTAAAGTTGATGAGATAAATAAGCTTCTTGACCACGAGATACTGCCTGCTTTGGACAAGTTGAGGAGAGAAAGGACACAATATATGCAATGGGCTAATGGCAATGCTGACTTGGATCGGCTTAAAAGGTTCTGCATTGCTTATGAATATGTCCAAGCAGAGAGGATTAGAGACACTGCAGTTTGTGAGGTGGAACAAGTGAAGGCCAAAATTTCTGAGGTTGACGATGATACAAGAAAGATGCAGGCAGCAATACAGGAAATGGAGACACAAGTGTCAAAGTTGACTGCTGAAAAGGAAGCTAGTATGGGTGGAGAAGTAAAAGTTTTGTCCACCCAAGTAGATAAGCTTTCTCAAGATGTAGTAAGGGAAGTGTCTATACTGGATAATATGAAGGACAATCTTGATACTGAAAATGAAAATGCTAAAAAGAATTTGTGTATTGCCTCTCTATGTTGTAAGATTGCTTGCAACATTGAAGACATGAAACAGTCTCTAAAAGATAGGGACTGTGCTATCAGAAATGCTGAAGAAGGAGCTGCTGATTTGAAAAGGAGAGCGGAGGAACTTTCTCATAGTCTGAATGAGTATGAGATGCAGTACCAGGGTGTAATCGCTGGCAAGAGTAGCGGAAATCAGGAGAAATGTCTTGAAGATCAATTGGGTGATGCCAAAAGAGCTGTAGGGAGTGCTGAAACAGAATTGGAACAGTTGAAAACAAAAATTCGTCACTGTGAAAAGGAGTTGAAAGAGAAAAATTCTCAACTAATGTCAAAGCGTGAAGAAGCTGTTGCTGTAGAGAGTGAGCTGAAAGCTAGGAAAACAGATGTGGAAAATGTTAAAGTGGCACTGGAGTCTCTTCCATATAAGGAGGGCCAGATAGAAGCATTGCAAAAGGACCGGTCATCTGAGTTGGAGTGTGTGCAGAAGTTGAAGGATGAAATGCGTAATCTTTCAGGACACTTGGGAAATGTTGACTTTTCTTATAGAGATCCTGTGAATAATTTTGCTAGGTCTAAGGTCAAGGGTGTAGTTGCAAAACTTATCAAAGTGAAGGATAGCTCCACAATGACTGCCTTAGAGGTCACTGCTGGTGGAAAGTTGTTTAACGTTGTTGTAGACACAGAAAGTACCGGAAAACAACTTCTTCAGAATGGTAATCTTCGAAGGAGAGTAACAATCATACCCTTGAACAAAATTCAAGCTCACACAGTTCCTCCTAGGGTTCAACATGCTGTTGCTAAATTGGTTGGCAAGGGAAATGCAGAACTGGCACTTTCTTTGGTTGGCTATGATGAGCAACTGAGGAGTGCTATGGAATATGTCTTCGGTTCAACCTTTGTGTGCAAAACTATTGATGCTGCAAAGGAGGTTGCGTTTAACAGGGACGTTCGCACCCCAAGTGTCACTCTTGAAGGTGATATCTTTCAGCCCAGTGGTCTTTTGACTGGTGGAAGCCGCAAGGGTGGGGGTGATCTGTTAAGGCAGCTTCATGAGCTGGCTGAAGCTGAGCTAAAACTGTCCGAGCACCAGAAAAAGTTGACTGAAATTGAAGCTAAGATTGGAGAGATTCAGCCTCTTCACAAGAAGTTCATGGAGCTTAAAGCACAGTTAGAACTCAAATCATATGACCTTAAATTATTTCAGGGCAGGGCTGAACAAAATGAGCATCATAAGCTTGGTGAATTAGTAAAGAGGATTGAGCAAGAGCTACAAGAAGCAAATTCTGCAGCCAAAGAAAAGAAACTTCTGCATGAAGATTGTGTGAATAAAGTGTTGTTTCTTGAGAAATCAATCAAAGAGCATGACAACAGTCGGGAGGGAAGGCTGAAAGATTTGGAAAAGAAGATCAAAGAGACAAAAGCTCAACTCCAGTCAGCTTCAAAGGATCTCAAGGGACATGAAAATGAAAAGGAGAAGCTTATTATGGAAAAGGATGTTGTTTTAAAAGAGCTTGCATCTTTGGAGACTCAGTTGTCTTCGTTGAGAGCACAAATTGATGGTCTCACTTCAGAAGTAGAAGAACAGAAAGAAAAGGTAAATTCTACAAGAAATAAGCATGATGATGCAAAATCCCAGCTTGATTCAATTCGTATGAAGATGAAGGAGTGTGATTCCCAAATTAATGGCATTGAATCTGATCAGCAAAGACTTCAAGACAAACTTCGTGAGACAAATCTTGAACGGAAAAGGATGGAACATGAGGTTAAAAGAATGGAAATGGAACAGAAAGACTGCTCTACGAAAGTAGACAAGTTGATAGAGAGGCATGCCTGGATAACATCTGAGAAACAGCTATTTGGAAAAACTGGGACTGATTATGATTTTGCCATGCGGGATCCTTGCAATGCAAGGGAAGAACTAGAGAAACTGCAGGCTCAACAATCTGGCCTTGAGAAAAGGGTGAATAAGAAAGTTATGGCAATGTTTGAGAAAGCAGAAGACGAGTACAATGACCTAATGTCTAAGAAGAACATCATTGAGAATGACAAGTCTAAGATCAAGATGGTGATTGAAGAGCTGGATGAGAAAAAGAAGGAAACATTGAACGTTACTTGGGTCAAAGTTAACAAAGATTTTGGGTCTATCTTTTCTACCCTTTTACCCGGCACGATGGGAAAGCTTGAACCTCCTGAAGGGTGCAGCTTCCTAGATGGCCTTGAGGTGCGTGTTGCATTTGGGGGTGTTTGGAAACAGTCCTTGTCAGAACTGAGTGGAGGTCAGCGATCCCTGCTAGCACTTTCTCTGATCTTGGCATTGCTTCTCTTCAAGCCAGCTCCTCTGTATATACTGGATGAGGTTGATGCAGCTCTTGATCTAAGTCACACCCAGAATATTGGAAGAATGATCAAAAGTCATTTCCCACACTCCCAGTTCATAGTGGTTTCACTGAAAGAAGGCATGTTCAATAATGCTAATGTCCTTTTCCGGACAAAATTTGTGGATGGAGTTTCTACTGTTCACAGGACCGTTGCTAAGCAAAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0000796 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1185

Amino Acids

133.72

Weight (kDa)

7.52

Isoelectric Point (pI)

37.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_N	PF02463	2 - 670	3.7e-36	RecF/RecN/SMC N terminal domain
AAA_23	PF13476	6 - 213	2.7e-13	AAA domain
SMC_hinge	PF06470	528 - 648	1.2e-23	SMC proteins Flexible Hinge Domain
SMC_N	PF02463	868 - 1171	4.5e-29	RecF/RecN/SMC N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47460 AT3G47460 AT5G62410
fragaria_vesca	FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g27331 FvH4_7g27350 FvH4_7g27351 FvH4_7g27370 FvH4_7g27601 FvH4_7g27643 FvH4_7g27644 FvH4_7g27690 FvH4_7g28371 FvH4_7g28372 FvH4_7g28800
malus_domestica	MD01G1182300.v1.1 MD07G1252800.v1.1
prunus_persica	Prupe.2G276400_v2.0.a1
pyrus_communis	pycom01g19230 pycom07g22540
rosa_chinensis	RchiOBHm_Chr1g0374201
rosa_laevigata	RLG00000026756
rosa_multiflora	Rmu_co8310535.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283650
rosa_rugosa	Rorug01G0381300
rosa_samantha	Rh1AG392300 Rh1BG356300 Rh1CG369300 Rh1DG386800
rosa_wichuraiana	Rw1G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	841, 2542
Acc16I	TGCGCA	1 cut(s)	366
AccBSI	CCGCTC	2 cut(s)	542, 1127
AccI	GTMKAC	2 cut(s)	1686, 2817
AccII	CGCG	2 cut(s)	44, 49
AccIII	TCCGGA	1 cut(s)	3495
AciI	CCGC	8 cut(s)	49, 176, 422, 540, 1127, 1197, 2026, 2902
AclI	AACGTT	2 cut(s)	1677, 3117
AclWI	GGATC	6 cut(s)	690, 1553, 2463, 2900, 2913, 3288
AcoI	YGGCCR	1 cut(s)	177
AcsI	RAATTY	8 cut(s)	777, 1000, 1290, 1324, 1764, 2290, 2608, 3503
AcuI	CTGAAG	5 cut(s)	1116, 1700, 2091, 2562, 3222
AfaI	GTAC	8 cut(s)	5, 41, 200, 284, 344, 1169, 1699, 3017
AfiI	CCNNNNNNNGG	4 cut(s)	27, 93, 312, 3203
AgeI	ACCGGT	1 cut(s)	1467
AhdI	GACNNNNNGTC	1 cut(s)	3028
AjnI	CCWGG	4 cut(s)	61, 210, 1170, 2840
AjuI	GAANNNNNNNTTGG	2 cut(s)	2112, 2144
Alw21I	GWGCWC	2 cut(s)	2097, 2560
Alw26I	GTCTC	9 cut(s)	241, 732, 827, 1065, 1428, 2417, 2528, 2576, 2732
AlwI	GGATC	6 cut(s)	690, 1553, 2463, 2900, 2913, 3288
Ama87I	CYCGRG	2 cut(s)	278, 476
Aor13HI	TCCGGA	1 cut(s)	3495
ApoI	RAATTY	8 cut(s)	777, 1000, 1290, 1324, 1764, 2290, 2608, 3503
ArsI	GACNNNNNNTTYG	4 cut(s)	291, 323, 2554, 2586
AseI	ATTAAT	2 cut(s)	351, 2691
AsiGI	ACCGGT	1 cut(s)	1467
AspA2I	CCTAGG	1 cut(s)	1787
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	6 cut(s)	259, 289, 379, 1441, 1465, 3534
AsuC2I	CCSGG	5 cut(s)	94, 173, 263, 313, 3174
AsuII	TTCGAA	1 cut(s)	1732
AsuNHI	GCTAGC	1 cut(s)	3301
AvaI	CYCGRG	2 cut(s)	278, 476
AvaII	GGWCC	4 cut(s)	259, 379, 1465, 3534
AvrII	CCTAGG	1 cut(s)	1787
BamHI	GGATCC	1 cut(s)	2905
BanII	GRGCYC	1 cut(s)	268
BarI	GAAGNNNNNNTAC	2 cut(s)	930, 962
BauI	CACGAG	1 cut(s)	602
BbsI	GAAGAC	5 cut(s)	238, 1053, 1885, 2538, 3015
Bbv12I	GWGCWC	2 cut(s)	2097, 2560
BccI	CCATC	7 cut(s)	248, 2561, 2755, 3067, 3175, 3215, 3506
BcgI	CGANNNNNNTGC	2 cut(s)	259, 293
BciT130I	CCWGG	4 cut(s)	63, 212, 1172, 2842
BclI	TGATCA	2 cut(s)	2707, 3414
BcnI	CCSGG	5 cut(s)	94, 173, 263, 313, 3174
BcoDI	GTCTC	9 cut(s)	241, 732, 827, 1065, 1428, 2417, 2528, 2576, 2732
BfaI	CTAG	8 cut(s)	194, 870, 1383, 1578, 1788, 2930, 3218, 3302
BfmI	CTRYAG	5 cut(s)	744, 1248, 1362, 2295, 2939
BlnI	CCTAGG	1 cut(s)	1787
BlpI	GCTNAGC	2 cut(s)	2076, 3543
BmcAI	AGTACT	1 cut(s)	344
Bme1390I	CCNGG	9 cut(s)	63, 94, 173, 212, 263, 313, 1172, 2842, 3174
Bme18I	GGWCC	4 cut(s)	259, 379, 1465, 3534
BmeRI	GACNNNNNGTC	1 cut(s)	3028
BmeT110I	CYCGRG	2 cut(s)	278, 476
BmgT120I	GGNCC	6 cut(s)	259, 289, 379, 1441, 1465, 3534
BmiI	GGNNCC	2 cut(s)	60, 2907
BmrFI	CCNGG	9 cut(s)	63, 94, 173, 212, 263, 313, 1172, 2842, 3174
BmrI	ACTGGG	3 cut(s)	1995, 2886, 3433
BmsI	GCATC	9 cut(s)	159, 798, 1152, 1225, 1915, 2245, 2534, 2623, 3361
BmtI	GCTAGC	1 cut(s)	3305
BmuI	ACTGGG	3 cut(s)	1995, 2886, 3433
BoxI	GACNNNNGTC	1 cut(s)	2379
BpiI	GAAGAC	5 cut(s)	238, 1053, 1885, 2538, 3015
BpmI	CTGGAG	2 cut(s)	1439, 2423
Bpu1102I	GCTNAGC	2 cut(s)	2076, 3543
Bpu14I	TTCGAA	1 cut(s)	1732
BpuEI	CTTGAG	6 cut(s)	575, 906, 2372, 2444, 2981, 3248
BpuMI	CCSGG	5 cut(s)	94, 173, 263, 313, 3174
BsaI	GGTCTC	1 cut(s)	2576
BsaJI	CCNNGG	4 cut(s)	21, 453, 1171, 1787
BsaWI	WCCGGW	3 cut(s)	1467, 1700, 3495
BsaXI	ACNNNNNCTCC	6 cut(s)	1768, 1798, 1928, 1958, 2525, 2555
Bsc4I	CCNNNNNNNGG	4 cut(s)	27, 93, 312, 3203
Bse118I	RCCGGY	1 cut(s)	1467
Bse1I	ACTGG	9 cut(s)	954, 1422, 1842, 2001, 2020, 2440, 2881, 3363, 3439
Bse3DI	GCAATG	7 cut(s)	662, 676, 702, 1454, 2920, 2997, 3323
BseAI	TCCGGA	1 cut(s)	3495
BseBI	CCWGG	4 cut(s)	63, 212, 1172, 2842
BseDI	CCNNGG	4 cut(s)	21, 453, 1171, 1787
BseGI	GGATG	6 cut(s)	1510, 2509, 2766, 3097, 3367, 3517
BseLI	CCNNNNNNNGG	4 cut(s)	27, 93, 312, 3203
BseMI	GCAATG	7 cut(s)	662, 676, 702, 1454, 2920, 2997, 3323
BseMII	CTCAG	7 cut(s)	774, 1467, 1862, 2067, 2552, 2844, 3269
BseNI	ACTGG	9 cut(s)	954, 1422, 1842, 2001, 2020, 2440, 2881, 3363, 3439
BseRI	GAGGAG	3 cut(s)	646, 1888, 3336
BseYI	CCCAGC	2 cut(s)	506, 2643
BsgI	GTGCAG	3 cut(s)	422, 1511, 3229
Bsh1236I	CGCG	2 cut(s)	44, 49
BshTI	ACCGGT	1 cut(s)	1467
BsiHKAI	GWGCWC	2 cut(s)	2097, 2560
BsiHKCI	CYCGRG	2 cut(s)	278, 476
BsiWI	CGTACG	1 cut(s)	39
BslFI	GGGAC	5 cut(s)	523, 1088, 1967, 2478, 2893
BslI	CCNNNNNNNGG	4 cut(s)	27, 93, 312, 3203
BsmAI	GTCTC	9 cut(s)	241, 732, 827, 1065, 1428, 2417, 2528, 2576, 2732
BsmBI	CGTCTC	1 cut(s)	241
BsmFI	GGGAC	5 cut(s)	523, 1088, 1967, 2478, 2893
Bso31I	GGTCTC	1 cut(s)	2576
BsoBI	CYCGRG	2 cut(s)	278, 476
Bsp119I	TTCGAA	1 cut(s)	1732
Bsp1286I	GDGCHC	3 cut(s)	268, 2097, 2560
Bsp13I	TCCGGA	1 cut(s)	3495
Bsp1407I	TGTACA	2 cut(s)	3, 198
Bsp1720I	GCTNAGC	2 cut(s)	2076, 3543
BspACI	CCGC	8 cut(s)	49, 176, 422, 540, 1127, 1197, 2026, 2902
BspCNI	CTCAG	7 cut(s)	775, 1468, 1863, 2068, 2551, 2845, 3270
BspEI	TCCGGA	1 cut(s)	3495
BspFNI	CGCG	2 cut(s)	44, 49
BspHI	TCATGA	1 cut(s)	2059
BspLI	GGNNCC	2 cut(s)	60, 2907
BspMAI	CTGCAG	3 cut(s)	748, 2299, 2943
BspOI	GCTAGC	1 cut(s)	3305
BspPI	GGATC	6 cut(s)	690, 1553, 2463, 2900, 2913, 3288
BspQI	GCTCTTC	1 cut(s)	3078
BspT104I	TTCGAA	1 cut(s)	1732
BspTNI	GGTCTC	1 cut(s)	2576
BsrBI	CCGCTC	2 cut(s)	542, 1127
BsrDI	GCAATG	7 cut(s)	662, 676, 702, 1454, 2920, 2997, 3323
BsrFI	RCCGGY	1 cut(s)	1467
BsrGI	TGTACA	2 cut(s)	3, 198
BsrI	ACTGG	9 cut(s)	954, 1422, 1842, 2001, 2020, 2440, 2881, 3363, 3439
BssAI	RCCGGY	1 cut(s)	1467
BssECI	CCNNGG	4 cut(s)	21, 453, 1171, 1787
BssSI	CACGAG	1 cut(s)	602
BssT1I	CCWWGG	3 cut(s)	21, 453, 1787
Bst2BI	CACGAG	1 cut(s)	602
Bst2UI	CCWGG	4 cut(s)	63, 212, 1172, 2842
Bst6I	CTCTTC	5 cut(s)	492, 1431, 2151, 3078, 3338
BstAPI	GCANNNNNTGC	1 cut(s)	2294
BstAUI	TGTACA	2 cut(s)	3, 198
BstBI	TTCGAA	1 cut(s)	1732
BstEII	GGTNACC	1 cut(s)	16
BstENI	CCTNNNNNAGG	1 cut(s)	3201
BstF5I	GGATG	6 cut(s)	1510, 2509, 2766, 3097, 3367, 3517
BstFNI	CGCG	2 cut(s)	44, 49
BstHHI	GCGC	1 cut(s)	367
BstMAI	GTCTC	9 cut(s)	241, 732, 827, 1065, 1428, 2417, 2528, 2576, 2732
BstMWI	GCNNNNNNNGC	7 cut(s)	1194, 1244, 1838, 2062, 2242, 2294, 3298
BstNI	CCWGG	4 cut(s)	63, 212, 1172, 2842
BstNSI	RCATGY	3 cut(s)	1802, 2840, 3472
BstPAI	GACNNNNGTC	1 cut(s)	2379
BstPI	GGTNACC	1 cut(s)	16
BstSCI	CCNGG	9 cut(s)	61, 92, 171, 210, 261, 311, 1170, 2840, 3172
BstSFI	CTRYAG	5 cut(s)	744, 1248, 1362, 2295, 2939
BstUI	CGCG	2 cut(s)	44, 49
BstV2I	GAAGAC	5 cut(s)	238, 1053, 1885, 2538, 3015
BstX2I	RGATCY	3 cut(s)	1558, 2455, 2905
BstXI	CCANNNNNNTGG	2 cut(s)	2693, 3404
BstYI	RGATCY	3 cut(s)	1558, 2455, 2905
BtsCI	GGATG	6 cut(s)	1510, 2509, 2766, 3097, 3367, 3517
BtsI	GCAGTG	2 cut(s)	741, 1653
BtsIMutI	CAGTG	6 cut(s)	741, 1297, 1415, 1653, 2008, 3455
CciI	TCATGA	1 cut(s)	2059
CfoI	GCGC	1 cut(s)	367
Cfr10I	RCCGGY	1 cut(s)	1467
Cfr13I	GGNCC	6 cut(s)	259, 289, 379, 1441, 1465, 3534
CpoI	CGGWCCG	1 cut(s)	259
CseI	GACGC	1 cut(s)	55
Csp6I	GTAC	8 cut(s)	4, 40, 199, 283, 343, 1168, 1698, 3016
CspAI	ACCGGT	1 cut(s)	1467
CspCI	CAANNNNNGTGG	2 cut(s)	3489, 3524
CspI	CGGWCCG	1 cut(s)	259
CviQI	GTAC	8 cut(s)	4, 40, 199, 283, 343, 1168, 1698, 3016
DraI	TTTAAA	1 cut(s)	2514
DrdI	GACNNNNNNGTC	2 cut(s)	841, 2542
DriI	GACNNNNNGTC	1 cut(s)	3028
DseDI	GACNNNNNNGTC	2 cut(s)	841, 2542
EaeI	YGGCCR	1 cut(s)	177
Eam1104I	CTCTTC	5 cut(s)	492, 1431, 2151, 3078, 3338
Eam1105I	GACNNNNNGTC	1 cut(s)	3028
EarI	CTCTTC	5 cut(s)	492, 1431, 2151, 3078, 3338
Eco130I	CCWWGG	3 cut(s)	21, 453, 1787
Eco24I	GRGCYC	1 cut(s)	268
Eco31I	GGTCTC	1 cut(s)	2576
Eco32I	GATATC	1 cut(s)	1990
Eco47I	GGWCC	4 cut(s)	259, 379, 1465, 3534
Eco57I	CTGAAG	5 cut(s)	1116, 1700, 2091, 2562, 3222
Eco88I	CYCGRG	2 cut(s)	278, 476
Eco91I	GGTNACC	1 cut(s)	16
EcoNI	CCTNNNNNAGG	1 cut(s)	3201
EcoO65I	GGTNACC	1 cut(s)	16
EcoRII	CCWGG	4 cut(s)	61, 210, 1170, 2840
EcoRV	GATATC	1 cut(s)	1990
EcoT14I	CCWWGG	3 cut(s)	21, 453, 1787
EcoT38I	GRGCYC	1 cut(s)	268
ErhI	CCWWGG	3 cut(s)	21, 453, 1787
Esp3I	CGTCTC	1 cut(s)	241
FalI	AAGNNNNNCTT	2 cut(s)	2715, 2747
FaqI	GGGAC	5 cut(s)	523, 1088, 1967, 2478, 2893
FauI	CCCGC	1 cut(s)	2895
FauNDI	CATATG	1 cut(s)	2194
FbaI	TGATCA	2 cut(s)	2707, 3414
FblI	GTMKAC	2 cut(s)	1686, 2817
FokI	GGATG	6 cut(s)	1517, 2516, 2773, 3104, 3374, 3524
FriOI	GRGCYC	1 cut(s)	268
FspBI	CTAG	8 cut(s)	194, 870, 1383, 1578, 1788, 2930, 3218, 3302
FspI	TGCGCA	1 cut(s)	366
GlaI	GCGC	1 cut(s)	366
GsaI	CCCAGC	2 cut(s)	510, 2647
GsuI	CTGGAG	2 cut(s)	1439, 2423
HgaI	GACGC	1 cut(s)	55
HhaI	GCGC	1 cut(s)	367
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HincII	GTYRAC	5 cut(s)	790, 852, 1543, 2109, 3136
HindII	GTYRAC	5 cut(s)	790, 852, 1543, 2109, 3136
HindIII	AAGCTT	5 cut(s)	590, 914, 2243, 2486, 3188
HinfI	GANTC	9 cut(s)	66, 128, 385, 1421, 2137, 2536, 2651, 2681, 2702
HpaI	GTTAAC	1 cut(s)	3136
Hpy99I	CGWCG	1 cut(s)	49
HpyCH4IV	ACGT	3 cut(s)	1677, 1956, 3117
HpyF10VI	GCNNNNNNNGC	7 cut(s)	1194, 1244, 1838, 2062, 2242, 2294, 3298
HpySE526I	ACGT	3 cut(s)	1677, 1956, 3117
HspAI	GCGC	1 cut(s)	365
Kpn2I	TCCGGA	1 cut(s)	3495
Ksp22I	TGATCA	2 cut(s)	2707, 3414
KspAI	GTTAAC	1 cut(s)	3136
LguI	GCTCTTC	1 cut(s)	3078
LmnI	GCTCC	4 cut(s)	1103, 1634, 2164, 3349
LweI	GCATC	9 cut(s)	159, 798, 1152, 1225, 1915, 2245, 2534, 2623, 3361
MaeI	CTAG	8 cut(s)	194, 870, 1383, 1578, 1788, 2930, 3218, 3302
MaeII	ACGT	3 cut(s)	1677, 1956, 3117
MaeIII	GTNAC	8 cut(s)	16, 307, 1295, 1651, 1741, 1972, 3118, 3389
MbiI	CCGCTC	2 cut(s)	542, 1127
MfeI	CAATTG	1 cut(s)	1226
MflI	RGATCY	3 cut(s)	1558, 2455, 2905
MhlI	GDGCHC	3 cut(s)	268, 2097, 2560
MlyI	GAGTC	2 cut(s)	1430, 2530
MmeI	TCCRAC	2 cut(s)	141, 1461
MroI	TCCGGA	1 cut(s)	3495
MslI	CAYNNNNRTG	2 cut(s)	2472, 2631
MspR9I	CCNGG	9 cut(s)	63, 94, 173, 212, 263, 313, 1172, 2842, 3174
MunI	CAATTG	1 cut(s)	1226
MvaI	CCWGG	4 cut(s)	63, 212, 1172, 2842
MvnI	CGCG	2 cut(s)	44, 49
MwoI	GCNNNNNNNGC	7 cut(s)	1194, 1244, 1838, 2062, 2242, 2294, 3298
NciI	CCSGG	5 cut(s)	94, 173, 263, 313, 3174
NdeI	CATATG	1 cut(s)	2194
NheI	GCTAGC	1 cut(s)	3301
NlaIV	GGNNCC	2 cut(s)	60, 2907
NmuCI	GTSAC	6 cut(s)	16, 307, 1295, 1651, 1972, 3389
NsbI	TGCGCA	1 cut(s)	366
NspI	RCATGY	3 cut(s)	1802, 2840, 3472
NspV	TTCGAA	1 cut(s)	1732
PaeI	GCATGC	1 cut(s)	2840
PagI	TCATGA	1 cut(s)	2059
PciSI	GCTCTTC	1 cut(s)	3078
PfeI	GAWTC	7 cut(s)	66, 128, 385, 2137, 2651, 2681, 2702
Pfl23II	CGTACG	1 cut(s)	39
PfoI	TCCNGGA	1 cut(s)	61
PinAI	ACCGGT	1 cut(s)	1467
PleI	GAGTC	2 cut(s)	1429, 2530
PpsI	GAGTC	2 cut(s)	1429, 2530
PshAI	GACNNNNGTC	1 cut(s)	2379
PshBI	ATTAAT	2 cut(s)	351, 2691
Psp1406I	AACGTT	2 cut(s)	1677, 3117
Psp6I	CCWGG	4 cut(s)	61, 210, 1170, 2840
PspEI	GGTNACC	1 cut(s)	16
PspFI	CCCAGC	2 cut(s)	506, 2643
PspGI	CCWGG	4 cut(s)	61, 210, 1170, 2840
PspLI	CGTACG	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	60, 2907
PspPI	GGNCC	6 cut(s)	259, 289, 379, 1441, 1465, 3534
PstI	CTGCAG	3 cut(s)	748, 2299, 2943
PsuI	RGATCY	3 cut(s)	1558, 2455, 2905
RsaI	GTAC	8 cut(s)	5, 41, 200, 284, 344, 1169, 1699, 3017
RsaNI	GTAC	8 cut(s)	4, 40, 199, 283, 343, 1168, 1698, 3016
RseI	CAYNNNNRTG	2 cut(s)	2472, 2631
Rsr2I	CGGWCCG	1 cut(s)	259
RsrII	CGGWCCG	1 cut(s)	259
SapI	GCTCTTC	1 cut(s)	3078
Sau96I	GGNCC	6 cut(s)	259, 289, 379, 1441, 1465, 3534
ScaI	AGTACT	1 cut(s)	344
SchI	GAGTC	2 cut(s)	1430, 2530
ScrFI	CCNGG	9 cut(s)	63, 94, 173, 212, 263, 313, 1172, 2842, 3174
SduI	GDGCHC	3 cut(s)	268, 2097, 2560
SfaNI	GCATC	9 cut(s)	159, 798, 1152, 1225, 1915, 2245, 2534, 2623, 3361
SfcI	CTRYAG	5 cut(s)	744, 1248, 1362, 2295, 2939
SfuI	TTCGAA	1 cut(s)	1732
SinI	GGWCC	4 cut(s)	259, 379, 1465, 3534
SmiMI	CAYNNNNRTG	2 cut(s)	2472, 2631
SmlI	CTYRAG	6 cut(s)	554, 921, 2351, 2459, 2960, 3227
SmoI	CTYRAG	6 cut(s)	554, 921, 2351, 2459, 2960, 3227
SphI	GCATGC	1 cut(s)	2840
SsiI	CCGC	8 cut(s)	49, 176, 422, 540, 1127, 1197, 2026, 2902
SspI	AATATT	1 cut(s)	3403
SspMI	CTAG	8 cut(s)	194, 870, 1383, 1578, 1788, 2930, 3218, 3302
StyD4I	CCNGG	9 cut(s)	61, 92, 171, 210, 261, 311, 1170, 2840, 3172
StyI	CCWWGG	3 cut(s)	21, 453, 1787
TaiI	ACGT	3 cut(s)	1680, 1959, 3120
TaqI	TCGA	5 cut(s)	69, 126, 131, 249, 1732
TatI	WGTACW	4 cut(s)	3, 198, 342, 3015
TauI	GCSGC	3 cut(s)	179, 542, 2028
TfiI	GAWTC	7 cut(s)	66, 128, 385, 2137, 2651, 2681, 2702
TscAI	CASTG	6 cut(s)	748, 1304, 1422, 1660, 2008, 3462
TseFI	GTSAC	6 cut(s)	16, 307, 1295, 1651, 1972, 3389
Tsp45I	GTSAC	6 cut(s)	16, 307, 1295, 1651, 1972, 3389
TspGWI	ACGGA	1 cut(s)	2767
TspRI	CASTG	6 cut(s)	748, 1304, 1422, 1660, 2008, 3462
VpaK11BI	GGWCC	4 cut(s)	259, 379, 1465, 3534
VspI	ATTAAT	2 cut(s)	351, 2691
XagI	CCTNNNNNAGG	1 cut(s)	3201
XapI	RAATTY	8 cut(s)	777, 1000, 1290, 1324, 1764, 2290, 2608, 3503
XceI	RCATGY	3 cut(s)	1802, 2840, 3472
XmaJI	CCTAGG	1 cut(s)	1787
XmiI	GTMKAC	2 cut(s)	1686, 2817
XspI	CTAG	8 cut(s)	194, 870, 1383, 1578, 1788, 2930, 3218, 3302
ZrmI	AGTACT	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.