Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003832

Physical Location & Seq

Genomic Coordinates Reverse (-)

28104180 .. 28111060

Gene Structure 6881 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1182300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3528 bp

ATGTACATCAAGGAGGTATGCCTGGAGGGCTTCAAGTCCTACGCGACGAGGACGGTGGTGCCCGGCTTCGACCCCTTTTTCAACGCCATAACGGGTTTGAACGGGTCGGGCAAGTCCAACATCCTCGACTCCATCTGCTTTGTCTTGGGCATAACCAATTTGCAGCAGGTCCGCGCCGCCAACCTCCAGGAACTCGTCTACAAGCAGGGCCAGGCGGGAATCACCAAGGCCACGGTCTCCATCGTCTTCGACAATTCAGACCGTGCCCGTAGTCCCCTCGGATACGAGGCACAATCCGAAATCACCGTCACCCGTCAGATTGTGGTTGGTGGAAGGAACAAGTATTTGATCAATGGGAAACTTGCACAGCCTAGTCAGGTCCAGAACCTTTTTCATTCAGTGCAGCTCAATGTTAACAACCCGCATTTTCTGATAATGCAAGGGCGCATTACCAAGGTTTTGAATATGAAACCACCCGAGATTCTCTCTATGCTTGAGGAGGCTGCTGGGACGAGAATGTATGAGACCAAGAAAGAGGCCGCTTTGAAGACACTTGAGAAGAAGCAGAGTAAAGTTGATGAGATCAATACGCTTCTTGACCAGGAGATACTGCCTGCCTTGGACAAGTTGAGGAGAGAAAGGGCCCAATATATGCAATGGGCTAATGGAAACGCTGACTTGGATCGCCTGAAAAGGTTTTGCATTGCGCATGAATATATTCAAGCACAGAGAATTAGAGACAGTGCAGCGTCTGAGCTGGAACAAGTGAAGGCCAGGATTTCCGAGGTTGATGATGATATGAGAAAGATGAAGGGAGAAATACAGGAAATGGAGACACAAGTGTCGAAGTTGACTGCTGAAAAGGAGGCTAGAATGGGTGGAGAAGTAAAATCTTTGTCTGACAAGTTAGATGCGCTTTCTCAAGATCTTGTGAAGGAAGTGTCCGTGTTGAGTAATAAAGAGGACACTCTTGGTATTGAAAATAAAAATGCTGAAAAGATTGTTAACAATATTGAAGACATGAAGCAGTCTGTAAAAGAGACGGACTTTGCTATAAGAAAGGCTGAAGAAGGAGCAGCTGATTTGAAAAAGAGAGCAGAGGAACTTTCTCAGACACTGAATGAGTATGAAAAGGATTATCAGGGTGTACTAGCGGGCAAGAGCAGTGGAAATGAGGAGAAATGCCTCGAAGATCAATTGGGTGATGCCAAAGTAGCTGTTGGGAATGCTGAAACAGAACTAAAACAGCTGAACACAAAAATAAGTCATTGTCAAAGGGAGTTAAAAGAGAAAAATAAACAACTAATGTCAAAACGTGAAGAAGCTGATGCGGTTAAGAGTGAACTTACCGCTAGAAAAAGAGATCTGGAAAATCTTGAAAATGCACTGAAGTCTGTTCCATATAAAGAGGGCCAGATGGAAGCATTACAAAAGGATCGTGCGTCTGAGTTGGGGGAGGTGCAGAAGTTGAGGGATGAAATGCGAAATCTTTCAGCTCAATTATCGAATGTTGAGTTTGCCTATCGGGATCCTGTGAATAACTTTGATAGGTCCAAGGTCAAGGGGGTAGTTGCAAAACTTATCAAAGTGAAGGATAGCTCCACCATGACTGCCTTAGAGGTTACTGCTGGTGGAAAGTTGTTTAATGTTGTTGTAGACACAGAAAGTACAGGAAAACAACTTCTTCAGAATGGCAACCTTCGAAGAAGAGTAACAATTATACCTCTTAACAAAATACAACCGTATACTGTTCATCCTAGGGTTCAACAAGCTGCTTCTAAATTGGTTGGCAAGGAGAATGCAGAGCTTGCACTTTCTTTGGTTGGGTATGATAATGAATTGAAGAGTGCTATGGAATTCGTTTTTGGTTCAACCTTTGTTTGCAAAACCGTAGATGCTGCAAAGGAGGTTGCTTTTAACAAGGAAATTCGCACCCCAAGTGTCACTCTTGAAGGTGATATCTTTCAGCCTAGTGGCCTTTTGACTGGTGGAAGCCGCAAGGGTGGGGGTGATTTGTTAAGGCAACTTCACGAGCTGGCAGAGACTGAACAAAAACTTTCCGTGCATCAGAGAAGATTGACCGAAATTGAAGCTAAGATTACAGAGCTTCTGCCTCTCCAGAAGAAGTTCATGGACATTAAAGCACAGTTAGAACTTAAATCCTATGACCTTTCATTATTCCAGGGCAGGGCTGAGCAAAATGAGCATCATAAGCTTGGTGAATTAGTAAAAAGGATTGAGCAGGAACTTCTAGAGGCACAATTTGCAGCAAAAGAAAAACAGCTGTTGTATGAAGATTGTGTGAATAAAGTTTCATTACTTGAGAAATCAATCAAAGAGAATGATAATAGTCGGGAGGGAAGGCTCAAAGATCTTGAAAAGAAGATTAAAGAAACAAAAACTCAAATGCAATCAGCTTCAAAGAATCTCAAGGGTCATGAGAATGAAAAAGAGAAGCTTATTATGGAAAAGGAAGCTGTTATAAAGGAACTTGCATCTTTAGAGACTCAATTAGCTTCTTTGAGAACACAAATTAACAACCTAATTTCAGAAGTGGAAGAACAGAGAGCAAAGGTAGGTTGTACAAGAAATATTCATGATAGTGCTCAATCTGAGCTTAACTCAATTCGTATGAAGATGAAGGAATGTGATTCCCAAATTAGTGGCATTCTTAAGGAGCAACAAACACTTCAGCATAAACTTAGTGAGACAAATCTTGAAAGGAAGAAAATGGAAAATGAGGTAAAACGAATGGAAATGGAGCAGAAAGATTGCTCTACCAAAGTTGATAGATTGGTAGAGAAACATGCCTGGATTGCATCTGAGAAACAGTTATTTGGTAAAAATGGGACTGATTATGATTTTTCCTTGCGGGATCCTCGTAATGCAAGGGAAGAATTTGAGAGACTGCAGGCCCAACAGTCTGGCCTTGAGAAAAGGGTGAATAAGAAAGTTATGGCCATGTTCGAGAAAGCAGAAGATGAGTACAATGACCTAATGTCTAAGAAGAACATCATTGAGAATGATAAGTCTAAGATCAAGAAGGTGATTGAAGAGCTGGATGAGAAAAAGAAGGAAACACTGAAAGTTACTTGGGTAAAAGTTAACAGTGACTTTGGATCTATCTTTTCTACCCTTTTGCCTGGCACAATGGGAAAGCTTGAACCTCCTGAAGGGTGCAGCTTCTTAGATGGACTTGAGGTTCGTGTTGCATTTGGGGGTGTTTGGAAACAGTCCTTGTCAGAACTGAGTGGAGGTCAGCGATCTCTGCTTGCACTTTCTCTGATCTTGGCATTGCTTCTCTTCAAACCCGCCCCACTTTACATACTGGATGAGGTTGATGCGGCTCTAGATCTAAGCCACACGCAGAACATTGGAAGAATGATCAAAACTCATTTCCCCCACTCCCAGTTTATCGTGGTTTCGCTGAAAGAAGGCATGTTCAACAATGCCAACGTTCTTTTCCGAACGAAATTCGTGGATGGAGTTTCGACTGTTCAAAGGACTGCTGCAGCCAAGCACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0000796 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

1176

Amino Acids

132.61

Weight (kDa)

8.13

Isoelectric Point (pI)

38.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_N	PF02463	2 - 404	1.5e-32	RecF/RecN/SMC N terminal domain
AAA_23	PF13476	8 - 216	1.1e-07	AAA domain
SMC_hinge	PF06470	518 - 638	1.8e-23	SMC proteins Flexible Hinge Domain
SMC_N	PF02463	841 - 1161	9.6e-30	RecF/RecN/SMC N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47460 AT3G47460 AT5G62410
fragaria_vesca	FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g27331 FvH4_7g27350 FvH4_7g27351 FvH4_7g27370 FvH4_7g27601 FvH4_7g27643 FvH4_7g27644 FvH4_7g27690 FvH4_7g28371 FvH4_7g28372 FvH4_7g28800
malus_domestica	MD01G1182300.v1.1 MD07G1252800.v1.1
prunus_persica	Prupe.2G276400_v2.0.a1
pyrus_communis	pycom01g19230 pycom07g22540
rosa_chinensis	RchiOBHm_Chr1g0374201
rosa_laevigata	RLG00000026756
rosa_multiflora	Rmu_co8310535.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283650
rosa_rugosa	Rorug01G0381300
rosa_samantha	Rh1AG392300 Rh1BG356300 Rh1CG369300 Rh1DG386800
rosa_wichuraiana	Rw1G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2483
AasI	GACNNNNNNGTC	1 cut(s)	841
Acc16I	TGCGCA	1 cut(s)	708
Acc36I	ACCTGC	1 cut(s)	157
AccB1I	GGYRCC	1 cut(s)	58
AccI	GTMKAC	3 cut(s)	198, 1656, 1745
AccII	CGCG	2 cut(s)	44, 174
AclI	AACGTT	1 cut(s)	3456
AclWI	GGATC	7 cut(s)	690, 1443, 1523, 1536, 2870, 2883, 3127
AcoI	YGGCCR	1 cut(s)	2958
AcsI	RAATTY	4 cut(s)	1856, 1926, 2897, 3473
AcuI	CTGAAG	5 cut(s)	1086, 1409, 1670, 2675, 3192
AfaI	GTAC	5 cut(s)	5, 1149, 1669, 2584, 2987
AfiI	CCNNNNNNNGG	2 cut(s)	2188, 3173
AflII	CTTAAG	1 cut(s)	2672
AhdI	GACNNNNNGTC	1 cut(s)	2998
AjnI	CCWGG	8 cut(s)	21, 186, 210, 600, 773, 2181, 2810, 3142
AjuI	GAANNNNNNNTTGG	4 cut(s)	1848, 1880, 3446, 3478
AloI	GAACNNNNNNTCC	2 cut(s)	3186, 3218
Alw21I	GWGCWC	1 cut(s)	2608
Alw26I	GTCTC	9 cut(s)	241, 518, 732, 827, 1034, 2036, 2498, 2702, 2899
AlwI	GGATC	7 cut(s)	690, 1443, 1523, 1536, 2870, 2883, 3127
AlwNI	CAGNNNCTG	3 cut(s)	752, 1117, 2045
Ama87I	CYCGRG	1 cut(s)	476
ApaI	GGGCCC	1 cut(s)	646
ApoI	RAATTY	4 cut(s)	1856, 1926, 2897, 3473
ArsI	GACNNNNNNTTYG	4 cut(s)	291, 323, 3186, 3218
Asp700I	GAANNNNTTC	3 cut(s)	717, 1489, 2126
AspA2I	CCTAGG	1 cut(s)	1757
AspLEI	GCGC	4 cut(s)	176, 447, 709, 916
AspS9I	GGNCC	8 cut(s)	169, 208, 379, 642, 643, 1411, 1551, 2914
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	9 cut(s)	214, 295, 301, 1214, 1967, 2021, 2231, 2953, 3058
AsuII	TTCGAA	1 cut(s)	1702
AvaI	CYCGRG	1 cut(s)	476
AvaII	GGWCC	3 cut(s)	169, 379, 1551
AvrII	CCTAGG	1 cut(s)	1757
BaeGI	GKGCMC	3 cut(s)	63, 268, 646
BalI	TGGCCA	1 cut(s)	2960
BamHI	GGATCC	2 cut(s)	1528, 2875
BanI	GGYRCC	1 cut(s)	58
BanII	GRGCYC	1 cut(s)	646
BauI	CACGAG	1 cut(s)	2030
BbsI	GAAGAC	3 cut(s)	238, 554, 1023
Bbv12I	GWGCWC	1 cut(s)	2608
BccI	CCATC	5 cut(s)	140, 248, 1411, 3185, 3476
BciT130I	CCWGG	8 cut(s)	23, 188, 212, 602, 775, 2183, 2812, 3144
BciVI	GTATCC	1 cut(s)	275
BclI	TGATCA	2 cut(s)	348, 3384
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	9 cut(s)	241, 518, 732, 827, 1034, 2036, 2498, 2702, 2899
BfaI	CTAG	8 cut(s)	372, 870, 1151, 1353, 1758, 1971, 2252, 3350
BfmI	CTRYAG	2 cut(s)	2909, 3510
BfrI	CTTAAG	1 cut(s)	2672
BfuAI	ACCTGC	1 cut(s)	157
BfuI	GTATCC	1 cut(s)	275
BglI	GCCNNNNNGGC	1 cut(s)	27
BglII	AGATCT	4 cut(s)	925, 1363, 2371, 3352
BlnI	CCTAGG	1 cut(s)	1757
BlpI	GCTNAGC	1 cut(s)	2193
Bme1390I	CCNGG	9 cut(s)	23, 63, 188, 212, 602, 775, 2183, 2812, 3144
Bme18I	GGWCC	3 cut(s)	169, 379, 1551
BmeRI	GACNNNNNGTC	1 cut(s)	2998
BmeT110I	CYCGRG	1 cut(s)	476
BmgT120I	GGNCC	8 cut(s)	169, 208, 379, 642, 643, 1411, 1551, 2914
BmiI	GGNNCC	4 cut(s)	60, 644, 1530, 2877
BmrFI	CCNGG	9 cut(s)	23, 63, 188, 212, 602, 775, 2183, 2812, 3144
BmrI	ACTGGG	1 cut(s)	3403
BmsI	GCATC	9 cut(s)	901, 1195, 1318, 1885, 2074, 2215, 2504, 2828, 3331
BmuI	ACTGGG	1 cut(s)	3403
BpiI	GAAGAC	3 cut(s)	238, 554, 1023
BplI	GAGNNNNNCTC	4 cut(s)	470, 502, 2606, 2638
BpmI	CTGGAG	3 cut(s)	44, 170, 2102
Bpu1102I	GCTNAGC	1 cut(s)	2193
Bpu14I	TTCGAA	1 cut(s)	1702
BpuEI	CTTGAG	7 cut(s)	515, 575, 906, 2342, 2414, 2951, 3218
BpuMI	CCSGG	1 cut(s)	63
BsaI	GGTCTC	2 cut(s)	241, 518
BsaJI	CCNNGG	9 cut(s)	225, 231, 277, 453, 618, 783, 1554, 1757, 2182
Bsc4I	CCNNNNNNNGG	2 cut(s)	2188, 3173
Bse1I	ACTGG	3 cut(s)	1990, 3333, 3409
Bse3DI	GCAATG	3 cut(s)	662, 702, 3293
BseBI	CCWGG	8 cut(s)	23, 188, 212, 602, 775, 2183, 2812, 3144
BseDI	CCNNGG	9 cut(s)	225, 231, 277, 453, 618, 783, 1554, 1757, 2182
BseGI	GGATG	6 cut(s)	120, 1480, 1753, 3067, 3337, 3487
BseLI	CCNNNNNNNGG	2 cut(s)	2188, 3173
BseMI	GCAATG	3 cut(s)	662, 702, 3293
BseMII	CTCAG	7 cut(s)	744, 1124, 1437, 2184, 2604, 2814, 3239
BseNI	ACTGG	3 cut(s)	1990, 3333, 3409
BseRI	GAGGAG	3 cut(s)	512, 646, 1190
BseSI	GKGCMC	3 cut(s)	63, 268, 646
BseYI	CCCAGC	1 cut(s)	506
BsgI	GTGCAG	4 cut(s)	422, 765, 1481, 3199
Bsh1236I	CGCG	2 cut(s)	44, 174
BshNI	GGYRCC	1 cut(s)	58
BsiHKAI	GWGCWC	1 cut(s)	2608
BsiHKCI	CYCGRG	1 cut(s)	476
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	3 cut(s)	258, 523, 2863
BslI	CCNNNNNNNGG	2 cut(s)	2188, 3173
BsmAI	GTCTC	9 cut(s)	241, 518, 732, 827, 1034, 2036, 2498, 2702, 2899
BsmBI	CGTCTC	1 cut(s)	1034
BsmFI	GGGAC	3 cut(s)	258, 523, 2863
BsmI	GAATGC	3 cut(s)	1231, 1804, 2667
Bso31I	GGTCTC	2 cut(s)	241, 518
BsoBI	CYCGRG	1 cut(s)	476
Bsp119I	TTCGAA	1 cut(s)	1702
Bsp120I	GGGCCC	1 cut(s)	642
Bsp1286I	GDGCHC	4 cut(s)	63, 268, 646, 2608
Bsp1407I	TGTACA	2 cut(s)	3, 2582
Bsp1720I	GCTNAGC	1 cut(s)	2193
BspCNI	CTCAG	7 cut(s)	745, 1123, 1438, 2185, 2605, 2815, 3240
BspFNI	CGCG	2 cut(s)	44, 174
BspHI	TCATGA	2 cut(s)	2437, 2596
BspLI	GGNNCC	4 cut(s)	60, 644, 1530, 2877
BspMAI	CTGCAG	2 cut(s)	2913, 3514
BspMI	ACCTGC	1 cut(s)	157
BspPI	GGATC	7 cut(s)	690, 1443, 1523, 1536, 2870, 2883, 3127
BspQI	GCTCTTC	1 cut(s)	3048
BspT104I	TTCGAA	1 cut(s)	1702
BspT107I	GGYRCC	1 cut(s)	58
BspTI	CTTAAG	1 cut(s)	2672
BspTNI	GGTCTC	2 cut(s)	241, 518
BsrDI	GCAATG	3 cut(s)	662, 702, 3293
BsrGI	TGTACA	2 cut(s)	3, 2582
BsrI	ACTGG	3 cut(s)	1990, 3333, 3409
BssECI	CCNNGG	9 cut(s)	225, 231, 277, 453, 618, 783, 1554, 1757, 2182
BssNAI	GTATAC	1 cut(s)	1746
BssSI	CACGAG	1 cut(s)	2030
BssT1I	CCWWGG	5 cut(s)	225, 453, 618, 1554, 1757
Bst1107I	GTATAC	1 cut(s)	1746
Bst2BI	CACGAG	1 cut(s)	2030
Bst2UI	CCWGG	8 cut(s)	23, 188, 212, 602, 775, 2183, 2812, 3144
Bst6I	CTCTTC	4 cut(s)	1702, 1838, 3048, 3308
BstAFI	CTTAAG	1 cut(s)	2672
BstAPI	GCANNNNNTGC	2 cut(s)	1808, 2264
BstAUI	TGTACA	2 cut(s)	3, 2582
BstBI	TTCGAA	1 cut(s)	1702
BstC8I	GCNNGC	6 cut(s)	615, 1156, 1809, 2037, 2913, 3273
BstDSI	CCRYGG	1 cut(s)	231
BstENI	CCTNNNNNAGG	1 cut(s)	3171
BstF5I	GGATG	6 cut(s)	120, 1480, 1753, 3067, 3337, 3487
BstFNI	CGCG	2 cut(s)	44, 174
BstHHI	GCGC	4 cut(s)	176, 447, 709, 916
BstMAI	GTCTC	9 cut(s)	241, 518, 732, 827, 1034, 2036, 2498, 2702, 2899
BstMWI	GCNNNNNNNGC	8 cut(s)	27, 1214, 1808, 2203, 2212, 2264, 2816, 3268
BstNI	CCWGG	8 cut(s)	23, 188, 212, 602, 775, 2183, 2812, 3144
BstNSI	RCATGY	2 cut(s)	2810, 3442
BstSCI	CCNGG	9 cut(s)	21, 61, 186, 210, 600, 773, 2181, 2810, 3142
BstSFI	CTRYAG	2 cut(s)	2909, 3510
BstSLI	GKGCMC	3 cut(s)	63, 268, 646
BstUI	CGCG	2 cut(s)	44, 174
BstV2I	GAAGAC	3 cut(s)	238, 554, 1023
BstX2I	RGATCY	7 cut(s)	925, 1363, 1528, 2371, 2875, 3119, 3352
BstXI	CCANNNNNNTGG	2 cut(s)	2663, 2924
BstYI	RGATCY	7 cut(s)	925, 1363, 1528, 2371, 2875, 3119, 3352
BstZ17I	GTATAC	1 cut(s)	1746
BsuI	GTATCC	1 cut(s)	275
BtgI	CCRYGG	1 cut(s)	231
BtsCI	GGATG	6 cut(s)	120, 1480, 1753, 3067, 3337, 3487
BtsI	GCAGTG	1 cut(s)	1171
BtsIMutI	CAGTG	7 cut(s)	405, 748, 1115, 1171, 1385, 3080, 3115
BveI	ACCTGC	1 cut(s)	157
Cac8I	GCNNGC	6 cut(s)	615, 1156, 1809, 2037, 2913, 3273
CaiI	CAGNNNCTG	3 cut(s)	752, 1117, 2045
CciI	TCATGA	2 cut(s)	2437, 2596
CfoI	GCGC	4 cut(s)	176, 447, 709, 916
Cfr13I	GGNCC	8 cut(s)	169, 208, 379, 642, 643, 1411, 1551, 2914
CseI	GACGC	2 cut(s)	738, 1431
Csp6I	GTAC	5 cut(s)	4, 1148, 1668, 2583, 2986
CspCI	CAANNNNNGTGG	2 cut(s)	1147, 1182
CviAII	CATG	9 cut(s)	710, 1021, 1606, 2131, 2438, 2597, 2807, 2962, 3439
CviQI	GTAC	5 cut(s)	4, 1148, 1668, 2583, 2986
DrdI	GACNNNNNNGTC	1 cut(s)	841
DriI	GACNNNNNGTC	1 cut(s)	2998
DseDI	GACNNNNNNGTC	1 cut(s)	841
EaeI	YGGCCR	1 cut(s)	2958
Eam1104I	CTCTTC	4 cut(s)	1702, 1838, 3048, 3308
Eam1105I	GACNNNNNGTC	1 cut(s)	2998
EarI	CTCTTC	4 cut(s)	1702, 1838, 3048, 3308
Eco130I	CCWWGG	5 cut(s)	225, 453, 618, 1554, 1757
Eco24I	GRGCYC	1 cut(s)	646
Eco31I	GGTCTC	2 cut(s)	241, 518
Eco32I	GATATC	1 cut(s)	1960
Eco47I	GGWCC	3 cut(s)	169, 379, 1551
Eco57I	CTGAAG	5 cut(s)	1086, 1409, 1670, 2675, 3192
Eco88I	CYCGRG	1 cut(s)	476
EcoNI	CCTNNNNNAGG	1 cut(s)	3171
EcoO109I	RGGNCCY	1 cut(s)	642
EcoRI	GAATTC	1 cut(s)	1856
EcoRII	CCWGG	8 cut(s)	21, 186, 210, 600, 773, 2181, 2810, 3142
EcoRV	GATATC	1 cut(s)	1960
EcoT14I	CCWWGG	5 cut(s)	225, 453, 618, 1554, 1757
EcoT38I	GRGCYC	1 cut(s)	646
ErhI	CCWWGG	5 cut(s)	225, 453, 618, 1554, 1757
Esp3I	CGTCTC	1 cut(s)	1034
FaeI	CATG	9 cut(s)	713, 1024, 1609, 2134, 2441, 2600, 2810, 2965, 3442
FalI	AAGNNNNNCTT	2 cut(s)	2442, 2474
FaqI	GGGAC	3 cut(s)	258, 523, 2863
FatI	CATG	9 cut(s)	709, 1020, 1605, 2130, 2437, 2596, 2806, 2961, 3438
FauI	CCCGC	5 cut(s)	208, 429, 1147, 2865, 3319
FbaI	TGATCA	2 cut(s)	348, 3384
FblI	GTMKAC	3 cut(s)	198, 1656, 1745
FokI	GGATG	6 cut(s)	107, 1487, 1740, 3074, 3344, 3494
FriOI	GRGCYC	1 cut(s)	646
FspBI	CTAG	8 cut(s)	372, 870, 1151, 1353, 1758, 1971, 2252, 3350
FspI	TGCGCA	1 cut(s)	708
GlaI	GCGC	4 cut(s)	175, 446, 708, 915
GsaI	CCCAGC	1 cut(s)	510
GsuI	CTGGAG	3 cut(s)	44, 170, 2102
HapII	CCGG	1 cut(s)	63
HgaI	GACGC	2 cut(s)	738, 1431
HhaI	GCGC	4 cut(s)	176, 447, 709, 916
Hin1II	CATG	9 cut(s)	713, 1024, 1609, 2134, 2441, 2600, 2810, 2965, 3442
Hin6I	GCGC	4 cut(s)	174, 445, 707, 914
HinP1I	GCGC	4 cut(s)	174, 445, 707, 914
HincII	GTYRAC	4 cut(s)	415, 852, 1006, 3106
HindII	GTYRAC	4 cut(s)	415, 852, 1006, 3106
HindIII	AAGCTT	3 cut(s)	2213, 2456, 3158
HinfI	GANTC	6 cut(s)	128, 219, 481, 2425, 2506, 2651
HpaI	GTTAAC	3 cut(s)	415, 1006, 3106
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	9 cut(s)	214, 295, 301, 1214, 1967, 2021, 2231, 2953, 3058
Hpy166II	GTNNAC	9 cut(s)	199, 415, 852, 1006, 1148, 1343, 1657, 1746, 3106
Hpy8I	GTNNAC	9 cut(s)	199, 415, 852, 1006, 1148, 1343, 1657, 1746, 3106
Hpy99I	CGWCG	1 cut(s)	49
HpyCH4IV	ACGT	2 cut(s)	1315, 3456
HpyF10VI	GCNNNNNNNGC	8 cut(s)	27, 1214, 1808, 2203, 2212, 2264, 2816, 3268
HpySE526I	ACGT	2 cut(s)	1315, 3456
Hsp92II	CATG	9 cut(s)	713, 1024, 1609, 2134, 2441, 2600, 2810, 2965, 3442
HspAI	GCGC	4 cut(s)	174, 445, 707, 914
Ksp22I	TGATCA	2 cut(s)	348, 3384
KspAI	GTTAAC	3 cut(s)	415, 1006, 3106
LguI	GCTCTTC	1 cut(s)	3048
LmnI	GCTCC	4 cut(s)	1073, 1604, 2677, 2761
LweI	GCATC	9 cut(s)	901, 1195, 1318, 1885, 2074, 2215, 2504, 2828, 3331
MaeI	CTAG	8 cut(s)	372, 870, 1151, 1353, 1758, 1971, 2252, 3350
MaeII	ACGT	2 cut(s)	1315, 3456
MaeIII	GTNAC	6 cut(s)	307, 1621, 1711, 1942, 3088, 3110
MfeI	CAATTG	1 cut(s)	1196
MflI	RGATCY	7 cut(s)	925, 1363, 1528, 2371, 2875, 3119, 3352
MhlI	GDGCHC	4 cut(s)	63, 268, 646, 2608
MlsI	TGGCCA	1 cut(s)	2960
MluNI	TGGCCA	1 cut(s)	2960
MlyI	GAGTC	2 cut(s)	122, 2500
MmeI	TCCRAC	1 cut(s)	141
Mox20I	TGGCCA	1 cut(s)	2960
MroXI	GAANNNNTTC	3 cut(s)	717, 1489, 2126
MscI	TGGCCA	1 cut(s)	2960
MslI	CAYNNNNRTG	2 cut(s)	2442, 2601
Msp20I	TGGCCA	1 cut(s)	2960
MspA1I	CMGCKG	3 cut(s)	1079, 1249, 2284
MspCI	CTTAAG	1 cut(s)	2672
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	9 cut(s)	23, 63, 188, 212, 602, 775, 2183, 2812, 3144
MunI	CAATTG	1 cut(s)	1196
Mva1269I	GAATGC	3 cut(s)	1231, 1804, 2667
MvaI	CCWGG	8 cut(s)	23, 188, 212, 602, 775, 2183, 2812, 3144
MvnI	CGCG	2 cut(s)	44, 174
MwoI	GCNNNNNNNGC	8 cut(s)	27, 1214, 1808, 2203, 2212, 2264, 2816, 3268
NciI	CCSGG	1 cut(s)	63
NlaIII	CATG	9 cut(s)	713, 1024, 1609, 2134, 2441, 2600, 2810, 2965, 3442
NlaIV	GGNNCC	4 cut(s)	60, 644, 1530, 2877
NmuCI	GTSAC	3 cut(s)	307, 1942, 3110
NsbI	TGCGCA	1 cut(s)	708
NspI	RCATGY	2 cut(s)	2810, 3442
NspV	TTCGAA	1 cut(s)	1702
PagI	TCATGA	2 cut(s)	2437, 2596
PciSI	GCTCTTC	1 cut(s)	3048
PctI	GAATGC	3 cut(s)	1231, 1804, 2667
PdmI	GAANNNNTTC	3 cut(s)	717, 1489, 2126
PfeI	GAWTC	4 cut(s)	219, 481, 2425, 2651
PfoI	TCCNGGA	1 cut(s)	186
PleI	GAGTC	2 cut(s)	122, 2500
PpsI	GAGTC	2 cut(s)	122, 2500
PsiI	TTATAA	1 cut(s)	2483
Psp1406I	AACGTT	1 cut(s)	3456
Psp6I	CCWGG	8 cut(s)	21, 186, 210, 600, 773, 2181, 2810, 3142
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	8 cut(s)	21, 186, 210, 600, 773, 2181, 2810, 3142
PspN4I	GGNNCC	4 cut(s)	60, 644, 1530, 2877
PspOMI	GGGCCC	1 cut(s)	642
PspPI	GGNCC	8 cut(s)	169, 208, 379, 642, 643, 1411, 1551, 2914
PstI	CTGCAG	2 cut(s)	2913, 3514
PstNI	CAGNNNCTG	3 cut(s)	752, 1117, 2045
PsuI	RGATCY	7 cut(s)	925, 1363, 1528, 2371, 2875, 3119, 3352
PvuII	CAGCTG	3 cut(s)	1079, 1249, 2284
RsaI	GTAC	5 cut(s)	5, 1149, 1669, 2584, 2987
RsaNI	GTAC	5 cut(s)	4, 1148, 1668, 2583, 2986
RseI	CAYNNNNRTG	2 cut(s)	2442, 2601
SapI	GCTCTTC	1 cut(s)	3048
Sau96I	GGNCC	8 cut(s)	169, 208, 379, 642, 643, 1411, 1551, 2914
SchI	GAGTC	2 cut(s)	122, 2500
ScrFI	CCNGG	9 cut(s)	23, 63, 188, 212, 602, 775, 2183, 2812, 3144
SduI	GDGCHC	4 cut(s)	63, 268, 646, 2608
SfaNI	GCATC	9 cut(s)	901, 1195, 1318, 1885, 2074, 2215, 2504, 2828, 3331
SfcI	CTRYAG	2 cut(s)	2909, 3510
SfuI	TTCGAA	1 cut(s)	1702
SinI	GGWCC	3 cut(s)	169, 379, 1551
SmiMI	CAYNNNNRTG	2 cut(s)	2442, 2601
SmlI	CTYRAG	8 cut(s)	494, 554, 921, 2321, 2429, 2672, 2930, 3197
SmoI	CTYRAG	8 cut(s)	494, 554, 921, 2321, 2429, 2672, 2930, 3197
SspI	AATATT	2 cut(s)	1012, 2593
SspMI	CTAG	8 cut(s)	372, 870, 1151, 1353, 1758, 1971, 2252, 3350
StyD4I	CCNGG	9 cut(s)	21, 61, 186, 210, 600, 773, 2181, 2810, 3142
StyI	CCWWGG	5 cut(s)	225, 453, 618, 1554, 1757
TaiI	ACGT	2 cut(s)	1318, 3459
TaqI	TCGA	9 cut(s)	69, 126, 249, 845, 1188, 1505, 1702, 2967, 3491
TaqII	GACCGA	1 cut(s)	2096
TatI	WGTACW	5 cut(s)	3, 1147, 1667, 2582, 2985
TauI	GCSGC	4 cut(s)	179, 542, 1998, 3347
TfiI	GAWTC	4 cut(s)	219, 481, 2425, 2651
TscAI	CASTG	7 cut(s)	405, 748, 1122, 1171, 1392, 3087, 3115
TseFI	GTSAC	3 cut(s)	307, 1942, 3110
Tsp45I	GTSAC	3 cut(s)	307, 1942, 3110
TspGWI	ACGGA	3 cut(s)	934, 1058, 2050
TspRI	CASTG	7 cut(s)	405, 748, 1122, 1171, 1392, 3087, 3115
Vha464I	CTTAAG	1 cut(s)	2672
VpaK11BI	GGWCC	3 cut(s)	169, 379, 1551
XagI	CCTNNNNNAGG	1 cut(s)	3171
XapI	RAATTY	4 cut(s)	1856, 1926, 2897, 3473
XbaI	TCTAGA	2 cut(s)	2251, 3349
XceI	RCATGY	2 cut(s)	2810, 3442
XmaJI	CCTAGG	1 cut(s)	1757
XmiI	GTMKAC	3 cut(s)	198, 1656, 1745
XmnI	GAANNNNTTC	3 cut(s)	717, 1489, 2126
XspI	CTAG	8 cut(s)	372, 870, 1151, 1353, 1758, 1971, 2252, 3350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.