FvH4_7g28371

Structural maintenance of chromosomes protein

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Forward (+)
21029522 .. 21031883
2362 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g28371.t1

Sequence Viewer

Length: 1494 bp
ATGTACATCAAGGAGGCGACCTTGGAAGGATTCAAGTCCTACGCGACGCGGACGGTGGTGCCGGGATTCGACCCGTTTTTCAACGCCATAACCGGGCTAAACGGGTCGGGGTATGAGGCCCATTCGGAGCTCACCGTCACACGGCAGATTGTGGTTGGTGGGAGGAACAAGTACTTGATCAATGGGAAACTTGCGCAGCCGAGTCAGGTGCAGAATCTTTTTCATTCGGTGCAGCTCAATGTGAATAATCCGCATTTTCTGATTATGCAAGGCCAGATTACCAAGGTTTTGAATATTAAACCCCCCGAGATTTTGTATTTGCTTGAAGAGGCTGCTGGGATGAGAATGTATGAGACCAAAAAGGAAGCGGTTCTTAAAACACTTGAGATGAAGCAGAGTAAAGTTGATGAGATTAATAAGCTTCTTGACCATGAGGTACTGCCTGCGTTGGACAAGTTGAGGAGAGAAAGGACACAGTATATGCAGTGGGCTAATGGCAATGCTGACTTGGATCGGCTCAAGAGGTTTTGCATTGCTTATGAATATGTTCAAGCGGAGAGGATTAGGGACAGTGCAGTTTGTGAGGTGGAACAAGTGAAGGCCAAAATTTCTGAGGTTGACGATGATACCAGAAAGATGCAGGCAACAATAAAGGAAATGGAGACACAAGTGTCCAAGTTGACTGCTGAAAAGGAGGCTAGTATGGGTGGAGAAGTGAAAACTCTGTCCAACCAAGTAGACGCGCTTTCTCAAGATGTAGTGAGGGAAGTGTCTATACTGGATAATATGAAGGACAATCTTGATACTGAAAATGAAAATGCTAGAAAGAGAGCGGAGGAACTTTCTCATAGTCTGAATGAGTATGAGACTCAGTTCCAGGGTGTAATCTCTGGCAAGAGTAGTGGAAATGAGGATAAATGCCTCGAATATCAATTGGGTGATGCCAAAAGAGCTGTAGGGAGTGCTGAAACAGAACTGGAACAGTTGAAAACAAAAATTCGTCACTGTGAAAAGGAGTTGAAAGAGAAAAGTTCTCAACTAATGTCAAAGCGTGAAGAAGCTGTTGCTGTAGAGAGTGAGCTGAAGGTTAGGAAAACAGATGTTGAAAATGTTAAATTGGCACTGGAGTCTCTTCCATATAAGGAGGGCCAGATGGAAGCTTTGCAAAAGGACCGATCATCTGAGTTGGAGTGTGTGCAGAAGTTGAAGGATGAAATGCGTAATCTTTCAGGACACTTGGGAAACGTTGACTTTTCTTATAGAGATCCTGTGAACAATTTTGATAGGTCTAAGGTCAAGGGTGTTGTTGCAAAACTTATCAAAGTGAAGGATAGCTCCACAATGACTGCCTTAGAGGTCACTGCCGGTGGAAAGTTATTTAATGTTGTTGTAGACACGGAAAGTACTGGAAAACAACTTCTTCAGAATGGCAATCTTCGAAGAAGAGTAACAATCATACCAATCTTCGAAGAAGAGAAACAATCATACCCTTGA

Protein Analysis

498

Amino Acids

56.27

Weight (kDa)

5.89

Isoelectric Point (pI)

32.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SMC_N PF02463 2 - 37 6.7e-06 RecF/RecN/SMC N terminal domain
SMC_hinge PF06470 430 - 488 2.7e-09 SMC proteins Flexible Hinge Domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 670
Acc16I TGCGCA 1 cut(s) 195
AccB1I GGYRCC 1 cut(s) 58
AccBSI CCGCTC 1 cut(s) 833
AccI GTMKAC 2 cut(s) 738, 1392
AccII CGCG 3 cut(s) 44, 49, 743
AciI CCGC 5 cut(s) 49, 251, 368, 554, 833
AclI AACGTT 1 cut(s) 1245
AclWI GGATC 2 cut(s) 519, 1259
AcsI RAATTY 2 cut(s) 606, 996
AcuI CTGAAG 2 cut(s) 1103, 1406
AfaI GTAC 4 cut(s) 5, 173, 438, 1405
AfiI CCNNNNNNNGG 2 cut(s) 93, 141
AgsI TTSAA 9 cut(s) 34, 82, 292, 326, 551, 988, 1021, 1106, 1207
AjnI CCWGG 1 cut(s) 876
AluBI AGCT 8 cut(s) 130, 235, 421, 953, 1061, 1081, 1160, 1335
AluI AGCT 8 cut(s) 130, 235, 421, 953, 1061, 1081, 1160, 1335
Alw21I GWGCWC 1 cut(s) 132
Alw26I GTCTC 4 cut(s) 347, 656, 860, 1134
AlwI GGATC 2 cut(s) 519, 1259
Ama87I CYCGRG 1 cut(s) 305
AoxI GGCC 4 cut(s) 117, 271, 600, 1147
ApeKI GCWGC 3 cut(s) 196, 232, 332
ApoI RAATTY 2 cut(s) 606, 996
AseI ATTAAT 1 cut(s) 414
Asp700I GAANNNNTTC 2 cut(s) 369, 546
AspLEI GCGC 2 cut(s) 196, 745
AspS9I GGNCC 3 cut(s) 118, 1147, 1171
AsuC2I CCSGG 2 cut(s) 63, 94
AsuHPI GGTGA 2 cut(s) 124, 950
AsuII TTCGAA 2 cut(s) 1438, 1467
AvaI CYCGRG 1 cut(s) 305
AvaII GGWCC 1 cut(s) 1171
BanI GGYRCC 1 cut(s) 58
BanII GRGCYC 1 cut(s) 132
BarI GAAGNNNNNNTAC 2 cut(s) 759, 791
Bbv12I GWGCWC 1 cut(s) 132
BbvI GCAGC 3 cut(s) 208, 244, 319
BccI CCATC 1 cut(s) 1147
BceAI ACGGC 1 cut(s) 158
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BciT130I CCWGG 1 cut(s) 878
BclI TGATCA 1 cut(s) 177
BcnI CCSGG 2 cut(s) 63, 94
BcoDI GTCTC 4 cut(s) 347, 656, 860, 1134
BfaI CTAG 2 cut(s) 699, 822
BfmI CTRYAG 2 cut(s) 954, 1068
BisI GCNGC 3 cut(s) 197, 233, 333
BlsI GCNGC 3 cut(s) 198, 234, 334
BmcAI AGTACT 2 cut(s) 173, 1405
Bme1390I CCNGG 3 cut(s) 63, 94, 878
Bme18I GGWCC 1 cut(s) 1171
BmeT110I CYCGRG 1 cut(s) 305
BmgT120I GGNCC 3 cut(s) 118, 1147, 1171
BmiI GGNNCC 1 cut(s) 60
BmrFI CCNGG 3 cut(s) 63, 94, 878
BmsI GCATC 2 cut(s) 627, 931
BpmI CTGGAG 1 cut(s) 1145
Bpu14I TTCGAA 2 cut(s) 1438, 1467
BpuEI CTTGAG 3 cut(s) 404, 503, 735
BpuMI CCSGG 2 cut(s) 63, 94
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 3 cut(s) 21, 282, 877
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 141
Bse118I RCCGGY 1 cut(s) 1364
Bse1I ACTGG 4 cut(s) 783, 981, 1128, 1411
Bse3DI GCAATG 2 cut(s) 505, 531
BseBI CCWGG 1 cut(s) 878
BseDI CCNNGG 3 cut(s) 21, 282, 877
BseGI GGATG 2 cut(s) 345, 1216
BseLI CCNNNNNNNGG 2 cut(s) 93, 141
BseMI GCAATG 2 cut(s) 505, 531
BseMII CTCAG 3 cut(s) 603, 884, 1173
BseNI ACTGG 4 cut(s) 783, 981, 1128, 1411
BseRI GAGGAG 1 cut(s) 475
BseXI GCAGC 3 cut(s) 208, 244, 319
BseYI CCCAGC 1 cut(s) 335
BsgI GTGCAG 4 cut(s) 230, 251, 594, 1217
Bsh1236I CGCG 3 cut(s) 44, 49, 743
BshFI GGCC 4 cut(s) 119, 273, 602, 1149
BshNI GGYRCC 1 cut(s) 58
BsiHKAI GWGCWC 1 cut(s) 132
BsiHKCI CYCGRG 1 cut(s) 305
BsiSI CCGG 3 cut(s) 62, 93, 1365
BslFI GGGAC 1 cut(s) 581
BslI CCNNNNNNNGG 2 cut(s) 93, 141
BsmAI GTCTC 4 cut(s) 347, 656, 860, 1134
BsmFI GGGAC 1 cut(s) 581
BsnI GGCC 4 cut(s) 119, 273, 602, 1149
Bso31I GGTCTC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 305
Bsp119I TTCGAA 2 cut(s) 1438, 1467
Bsp1286I GDGCHC 1 cut(s) 132
Bsp1407I TGTACA 1 cut(s) 3
Bsp143I GATC 4 cut(s) 177, 511, 1175, 1264
BspACI CCGC 5 cut(s) 49, 251, 368, 554, 833
BspANI GGCC 4 cut(s) 119, 273, 602, 1149
BspCNI CTCAG 3 cut(s) 604, 883, 1174
BspFNI CGCG 3 cut(s) 44, 49, 743
BspLI GGNNCC 1 cut(s) 60
BspPI GGATC 2 cut(s) 519, 1259
BspT104I TTCGAA 2 cut(s) 1438, 1467
BspT107I GGYRCC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 347
BsrBI CCGCTC 1 cut(s) 833
BsrDI GCAATG 2 cut(s) 505, 531
BsrFI RCCGGY 1 cut(s) 1364
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 4 cut(s) 783, 981, 1128, 1411
BssAI RCCGGY 1 cut(s) 1364
BssECI CCNNGG 3 cut(s) 21, 282, 877
BssMI GATC 4 cut(s) 177, 511, 1175, 1264
BssT1I CCWWGG 2 cut(s) 21, 282
Bst2UI CCWGG 1 cut(s) 878
Bst4CI ACNGT 6 cut(s) 55, 136, 477, 572, 984, 1007
Bst6I CTCTTC 4 cut(s) 321, 1137, 1438, 1467
BstAUI TGTACA 1 cut(s) 3
BstBI TTCGAA 2 cut(s) 1438, 1467
BstC8I GCNNGC 2 cut(s) 444, 642
BstDEI CTNAG 5 cut(s) 612, 870, 1182, 1290, 1351
BstF5I GGATG 2 cut(s) 345, 1216
BstFNI CGCG 3 cut(s) 44, 49, 743
BstHHI GCGC 2 cut(s) 196, 745
BstKTI GATC 4 cut(s) 180, 514, 1178, 1267
BstMAI GTCTC 4 cut(s) 347, 656, 860, 1134
BstMBI GATC 4 cut(s) 177, 511, 1175, 1264
BstMWI GCNNNNNNNGC 1 cut(s) 950
BstNI CCWGG 1 cut(s) 878
BstSCI CCNGG 3 cut(s) 61, 92, 876
BstSFI CTRYAG 2 cut(s) 954, 1068
BstUI CGCG 3 cut(s) 44, 49, 743
BstV1I GCAGC 3 cut(s) 208, 244, 319
BstX2I RGATCY 1 cut(s) 1264
BstYI RGATCY 1 cut(s) 1264
BsuRI GGCC 4 cut(s) 119, 273, 602, 1149
BtsCI GGATG 2 cut(s) 345, 1216
BtsI GCAGTG 2 cut(s) 491, 1359
BtsIMutI CAGTG 5 cut(s) 491, 577, 1003, 1121, 1359
Cac8I GCNNGC 2 cut(s) 444, 642
CfoI GCGC 2 cut(s) 196, 745
Cfr10I RCCGGY 1 cut(s) 1364
Cfr13I GGNCC 3 cut(s) 118, 1147, 1171
CseI GACGC 2 cut(s) 55, 749
Csp6I GTAC 4 cut(s) 4, 172, 437, 1404
CspCI CAANNNNNGTGG 2 cut(s) 883, 918
CviAII CATG 1 cut(s) 431
CviQI GTAC 4 cut(s) 4, 172, 437, 1404
DdeI CTNAG 5 cut(s) 612, 870, 1182, 1290, 1351
DpnI GATC 4 cut(s) 179, 513, 1177, 1266
DpnII GATC 4 cut(s) 177, 511, 1175, 1264
DrdI GACNNNNNNGTC 1 cut(s) 670
DseDI GACNNNNNNGTC 1 cut(s) 670
Eam1104I CTCTTC 4 cut(s) 321, 1137, 1438, 1467
EarI CTCTTC 4 cut(s) 321, 1137, 1438, 1467
Ecl136II GAGCTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 21, 282
Eco24I GRGCYC 1 cut(s) 132
Eco31I GGTCTC 1 cut(s) 347
Eco47I GGWCC 1 cut(s) 1171
Eco53kI GAGCTC 1 cut(s) 130
Eco57I CTGAAG 2 cut(s) 1103, 1406
Eco88I CYCGRG 1 cut(s) 305
EcoICRI GAGCTC 1 cut(s) 130
EcoRII CCWGG 1 cut(s) 876
EcoT14I CCWWGG 2 cut(s) 21, 282
EcoT38I GRGCYC 1 cut(s) 132
ErhI CCWWGG 2 cut(s) 21, 282
FaeI CATG 1 cut(s) 434
FalI AAGNNNNNCTT 2 cut(s) 357, 389
FaqI GGGAC 1 cut(s) 581
FatI CATG 1 cut(s) 430
FbaI TGATCA 1 cut(s) 177
FblI GTMKAC 2 cut(s) 738, 1392
Fnu4HI GCNGC 3 cut(s) 197, 233, 333
FokI GGATG 2 cut(s) 352, 1223
FriOI GRGCYC 1 cut(s) 132
Fsp4HI GCNGC 3 cut(s) 197, 233, 333
FspBI CTAG 2 cut(s) 699, 822
FspI TGCGCA 1 cut(s) 195
GlaI GCGC 2 cut(s) 195, 744
GluI GCNGC 3 cut(s) 197, 233, 333
GsaI CCCAGC 1 cut(s) 339
GsuI CTGGAG 1 cut(s) 1145
HaeIII GGCC 4 cut(s) 119, 273, 602, 1149
HapII CCGG 3 cut(s) 62, 93, 1365
HgaI GACGC 2 cut(s) 55, 749
HhaI GCGC 2 cut(s) 196, 745
Hin1II CATG 1 cut(s) 434
Hin6I GCGC 2 cut(s) 194, 743
HinP1I GCGC 2 cut(s) 194, 743
HincII GTYRAC 3 cut(s) 619, 681, 1249
HindII GTYRAC 3 cut(s) 619, 681, 1249
HindIII AAGCTT 2 cut(s) 419, 1158
HinfI GANTC 6 cut(s) 30, 66, 202, 214, 868, 1127
HpaII CCGG 3 cut(s) 62, 93, 1365
HphI GGTGA 2 cut(s) 124, 950
Hpy166II GTNNAC 6 cut(s) 619, 681, 739, 1249, 1273, 1393
Hpy188I TCNGA 6 cut(s) 127, 261, 613, 855, 1183, 1425
Hpy188III TCNNGA 5 cut(s) 425, 520, 752, 800, 1230
Hpy8I GTNNAC 6 cut(s) 619, 681, 739, 1249, 1273, 1393
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 6 cut(s) 20, 592, 784, 1078, 1201, 1321
HpyCH4III ACNGT 6 cut(s) 55, 136, 477, 572, 984, 1007
HpyCH4IV ACGT 1 cut(s) 1245
HpyF10VI GCNNNNNNNGC 1 cut(s) 950
HpyF3I CTNAG 5 cut(s) 612, 870, 1182, 1290, 1351
HpySE526I ACGT 1 cut(s) 1245
Hsp92II CATG 1 cut(s) 434
HspAI GCGC 2 cut(s) 194, 743
Ksp22I TGATCA 1 cut(s) 177
Kzo9I GATC 4 cut(s) 177, 511, 1175, 1264
LmnI GCTCC 2 cut(s) 127, 1340
Lsp1109I GCAGC 3 cut(s) 208, 244, 319
LweI GCATC 2 cut(s) 627, 931
MaeI CTAG 2 cut(s) 699, 822
MaeII ACGT 1 cut(s) 1245
MaeIII GTNAC 4 cut(s) 136, 1001, 1357, 1447
MalI GATC 4 cut(s) 179, 513, 1177, 1266
MbiI CCGCTC 1 cut(s) 833
MboI GATC 4 cut(s) 177, 511, 1175, 1264
MfeI CAATTG 1 cut(s) 932
MflI RGATCY 1 cut(s) 1264
MhlI GDGCHC 1 cut(s) 132
MluCI AATT 5 cut(s) 606, 932, 996, 1115, 1276
MlyI GAGTC 3 cut(s) 211, 862, 1136
MmeI TCCRAC 3 cut(s) 429, 753, 1167
MroXI GAANNNNTTC 2 cut(s) 369, 546
MseI TTAA 5 cut(s) 297, 375, 414, 1113, 1380
MspI CCGG 3 cut(s) 62, 93, 1365
MspR9I CCNGG 3 cut(s) 63, 94, 878
MunI CAATTG 1 cut(s) 932
MvaI CCWGG 1 cut(s) 878
MvnI CGCG 3 cut(s) 44, 49, 743
MwoI GCNNNNNNNGC 1 cut(s) 950
NciI CCSGG 2 cut(s) 63, 94
NdeII GATC 4 cut(s) 177, 511, 1175, 1264
NlaIII CATG 1 cut(s) 434
NlaIV GGNNCC 1 cut(s) 60
NmeAIII GCCGAG 1 cut(s) 225
NmuCI GTSAC 3 cut(s) 136, 1001, 1357
NsbI TGCGCA 1 cut(s) 195
NspV TTCGAA 2 cut(s) 1438, 1467
PdmI GAANNNNTTC 2 cut(s) 369, 546
PfeI GAWTC 3 cut(s) 30, 66, 214
PkrI GCNGC 3 cut(s) 198, 234, 334
PleI GAGTC 3 cut(s) 210, 862, 1135
PpsI GAGTC 3 cut(s) 210, 862, 1135
PshBI ATTAAT 1 cut(s) 414
Psp124BI GAGCTC 1 cut(s) 132
Psp1406I AACGTT 1 cut(s) 1245
Psp6I CCWGG 1 cut(s) 876
PspFI CCCAGC 1 cut(s) 335
PspGI CCWGG 1 cut(s) 876
PspN4I GGNNCC 1 cut(s) 60
PspPI GGNCC 3 cut(s) 118, 1147, 1171
PsuI RGATCY 1 cut(s) 1264
RsaI GTAC 4 cut(s) 5, 173, 438, 1405
RsaNI GTAC 4 cut(s) 4, 172, 437, 1404
SacI GAGCTC 1 cut(s) 132
SaqAI TTAA 5 cut(s) 297, 375, 414, 1113, 1380
SatI GCNGC 3 cut(s) 197, 233, 333
Sau3AI GATC 4 cut(s) 177, 511, 1175, 1264
Sau96I GGNCC 3 cut(s) 118, 1147, 1171
ScaI AGTACT 2 cut(s) 173, 1405
SchI GAGTC 3 cut(s) 211, 862, 1136
ScrFI CCNGG 3 cut(s) 63, 94, 878
SduI GDGCHC 1 cut(s) 132
SfaNI GCATC 2 cut(s) 627, 931
SfcI CTRYAG 2 cut(s) 954, 1068
SfuI TTCGAA 2 cut(s) 1438, 1467
SinI GGWCC 1 cut(s) 1171
SmlI CTYRAG 3 cut(s) 383, 518, 750
SmoI CTYRAG 3 cut(s) 383, 518, 750
Sse9I AATT 5 cut(s) 606, 932, 996, 1115, 1276
SsiI CCGC 5 cut(s) 49, 251, 368, 554, 833
SspI AATATT 1 cut(s) 295
SspMI CTAG 2 cut(s) 699, 822
SstI GAGCTC 1 cut(s) 132
StyD4I CCNGG 3 cut(s) 61, 92, 876
StyI CCWWGG 2 cut(s) 21, 282
TaaI ACNGT 6 cut(s) 55, 136, 477, 572, 984, 1007
TaiI ACGT 1 cut(s) 1248
TaqI TCGA 4 cut(s) 69, 924, 1438, 1467
TaqII GACCGA 1 cut(s) 1188
TasI AATT 5 cut(s) 606, 932, 996, 1115, 1276
TatI WGTACW 3 cut(s) 3, 171, 1403
TfiI GAWTC 3 cut(s) 30, 66, 214
Tru1I TTAA 5 cut(s) 297, 375, 414, 1113, 1380
Tru9I TTAA 5 cut(s) 297, 375, 414, 1113, 1380
TscAI CASTG 5 cut(s) 491, 577, 1010, 1128, 1366
TseFI GTSAC 3 cut(s) 136, 1001, 1357
TseI GCWGC 3 cut(s) 196, 232, 332
Tsp45I GTSAC 3 cut(s) 136, 1001, 1357
TspDTI ATGAA 6 cut(s) 212, 404, 555, 803, 828, 1227
TspGWI ACGGA 1 cut(s) 1412
TspRI CASTG 5 cut(s) 491, 577, 1010, 1128, 1366
VpaK11BI GGWCC 1 cut(s) 1171
VspI ATTAAT 1 cut(s) 414
XapI RAATTY 2 cut(s) 606, 996
XmiI GTMKAC 2 cut(s) 738, 1392
XmnI GAANNNNTTC 2 cut(s) 369, 546
XspI CTAG 2 cut(s) 699, 822
ZrmI AGTACT 2 cut(s) 173, 1405
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.