Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003832

Physical Location & Seq

Genomic Coordinates Reverse (-)

20610550 .. 20612861

Gene Structure 2312 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27643.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1050 bp

ATGGCAAAGGATGTTGTTTTAAAAGAGCTTGCATCTTTGGAGACGCAGTTGTCTTCTTTGAGAGCACAAATTGATGGACTCGTTTCAGACGTAGAAGAGCAGAAAGAGAAGGTAAATTTTACAAGAAATAAGCATGATCATGCAAAATCCCAGCTTGATTCAATTTGTATGAAGATGAAGGAGTGTGATTCCCAAATTAATGGCATTGAATCTGAGCAGCAAAGACTTAAAGACAAACTTCGCGAGACAGATCTTGAACGGAAGAGGATGGAAAATGAGGTAAAACGAATGGAAACGGAACAGAAAGACTGCTCTACGAAAGTAGACAAGTTGGTAGAGAGGCATGCCTGGATAACTTCTGAGAAACAGCTATTTGGAAAAACTGGGACTGATTATGATTTTGCAACGCGGGATCCTTGCAATGCAAGGGAGGAACTAGATAAACTGCAGGCTCAACTATCTGGCCTTGAGAAAAGGGTGAATAAGAAAGTTATGGCAATGTTTGAGAAAGCAGAAGACGAGTACAATGACCTAATGTCTAAGAAGAACATCATTGAGATGAAGATGGTGATTGAAGAGCTGGATGAGAAAAAGAAGGAAACATTGAATGTTACTTGGGTCAAAGTTAACAAAGACTTTGGGTCTATCTTTTCTACCCTTTTACCCGGCACAATGGGAAAGCTTGAACCTCCTGAAGGGTGTAGTTTCCTAGATGGCCTTGAGGTGCGTGTTGCATTTGGGGGTGTTTGGAAACAGTCTTTGTCAGAACTGAGTGGAGGTCAGCGATCCCTGCTGGCACTTTCTCTGATCTTGGCATTGCTTCTCTTCAAACCAGCTCCTCTGTATATACTGGATGAGGTTGATGCAGCTCTTGATCTAAGTCACACCCAGAATATTGGAAGAATGATCAAAAGTCATTTCCCACACTCCCAGTTCATTGTGGTTTCACTGAAAGAGGGCATGTTCAATAATGCTAATGTCCTTTTCCGAACAAAGTTTGTGGATGGAGTTTCAACTGTTCAAAGGACCGTTGCTAAACAAAACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0000796 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

350

Amino Acids

39.75

Weight (kDa)

6.38

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_N	PF02463	36 - 335	1.8e-30	RecF/RecN/SMC N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47460 AT3G47460 AT5G62410
fragaria_vesca	FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g27331 FvH4_7g27350 FvH4_7g27351 FvH4_7g27370 FvH4_7g27601 FvH4_7g27643 FvH4_7g27644 FvH4_7g27690 FvH4_7g28371 FvH4_7g28372 FvH4_7g28800
malus_domestica	MD01G1182300.v1.1 MD07G1252800.v1.1
prunus_persica	Prupe.2G276400_v2.0.a1
pyrus_communis	pycom01g19230 pycom07g22540
rosa_chinensis	RchiOBHm_Chr1g0374201
rosa_laevigata	RLG00000026756
rosa_multiflora	Rmu_co8310535.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283650
rosa_rugosa	Rorug01G0381300
rosa_samantha	Rh1AG392300 Rh1BG356300 Rh1CG369300 Rh1DG386800
rosa_wichuraiana	Rw1G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	49
AccI	GTMKAC	1 cut(s)	324
AccII	CGCG	2 cut(s)	243, 409
AciI	CCGC	1 cut(s)	409
AclWI	GGATC	3 cut(s)	407, 420, 780
AcsI	RAATTY	1 cut(s)	115
AcuI	CTGAAG	1 cut(s)	714
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	1 cut(s)	695
AhdI	GACNNNNNGTC	2 cut(s)	535, 640
AjnI	CCWGG	1 cut(s)	347
AluBI	AGCT	7 cut(s)	28, 154, 370, 580, 682, 836, 869
AluI	AGCT	7 cut(s)	28, 154, 370, 580, 682, 836, 869
Alw21I	GWGCWC	1 cut(s)	67
Alw26I	GTCTC	2 cut(s)	35, 239
AlwI	GGATC	3 cut(s)	407, 420, 780
AoxI	GGCC	2 cut(s)	463, 715
ApeKI	GCWGC	2 cut(s)	217, 866
ApoI	RAATTY	1 cut(s)	115
AseI	ATTAAT	1 cut(s)	198
AspS9I	GGNCC	1 cut(s)	1026
AsuC2I	CCSGG	1 cut(s)	666
AsuHPI	GGTGA	2 cut(s)	490, 580
AvaII	GGWCC	1 cut(s)	1026
BamHI	GGATCC	1 cut(s)	412
BbsI	GAAGAC	2 cut(s)	45, 522
Bbv12I	GWGCWC	1 cut(s)	67
BbvI	GCAGC	2 cut(s)	229, 878
BccI	CCATC	5 cut(s)	68, 262, 559, 707, 998
BciT130I	CCWGG	1 cut(s)	349
BclI	TGATCA	2 cut(s)	136, 906
BcnI	CCSGG	1 cut(s)	666
BcoDI	GTCTC	2 cut(s)	35, 239
BfaI	CTAG	2 cut(s)	437, 710
BfmI	CTRYAG	1 cut(s)	446
BglII	AGATCT	1 cut(s)	250
BisI	GCNGC	2 cut(s)	218, 867
BlsI	GCNGC	2 cut(s)	219, 868
Bme1390I	CCNGG	2 cut(s)	349, 666
Bme18I	GGWCC	1 cut(s)	1026
BmeRI	GACNNNNNGTC	2 cut(s)	535, 640
BmgT120I	GGNCC	1 cut(s)	1026
BmiI	GGNNCC	1 cut(s)	414
BmrFI	CCNGG	2 cut(s)	349, 666
BmrI	ACTGGG	2 cut(s)	393, 925
BmsI	GCATC	2 cut(s)	41, 853
BmuI	ACTGGG	2 cut(s)	393, 925
BpiI	GAAGAC	2 cut(s)	45, 522
BpuEI	CTTGAG	2 cut(s)	488, 740
BpuMI	CCSGG	1 cut(s)	666
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	695
Bse1I	ACTGG	3 cut(s)	388, 855, 931
Bse3DI	GCAATG	3 cut(s)	427, 504, 815
BseBI	CCWGG	1 cut(s)	349
BseGI	GGATG	5 cut(s)	16, 273, 589, 859, 1009
BseLI	CCNNNNNNNGG	1 cut(s)	695
BseMI	GCAATG	3 cut(s)	427, 504, 815
BseMII	CTCAG	3 cut(s)	204, 351, 761
BseNI	ACTGG	3 cut(s)	388, 855, 931
BseRI	GAGGAG	1 cut(s)	828
BseXI	GCAGC	2 cut(s)	229, 878
BseYI	CCCAGC	1 cut(s)	150
Bsh1236I	CGCG	2 cut(s)	243, 409
BshFI	GGCC	2 cut(s)	465, 717
BsiHKAI	GWGCWC	1 cut(s)	67
BsiSI	CCGG	1 cut(s)	666
BslFI	GGGAC	1 cut(s)	400
BslI	CCNNNNNNNGG	1 cut(s)	695
BsmAI	GTCTC	2 cut(s)	35, 239
BsmBI	CGTCTC	1 cut(s)	35
BsmFI	GGGAC	1 cut(s)	400
BsnI	GGCC	2 cut(s)	465, 717
Bsp1286I	GDGCHC	1 cut(s)	67
Bsp143I	GATC	7 cut(s)	136, 250, 412, 785, 807, 874, 906
Bsp68I	TCGCGA	1 cut(s)	243
BspACI	CCGC	1 cut(s)	409
BspANI	GGCC	2 cut(s)	465, 717
BspCNI	CTCAG	3 cut(s)	205, 352, 762
BspFNI	CGCG	2 cut(s)	243, 409
BspLI	GGNNCC	1 cut(s)	414
BspMAI	CTGCAG	1 cut(s)	450
BspPI	GGATC	3 cut(s)	407, 420, 780
BspQI	GCTCTTC	2 cut(s)	90, 570
BsrDI	GCAATG	3 cut(s)	427, 504, 815
BsrI	ACTGG	3 cut(s)	388, 855, 931
BssMI	GATC	7 cut(s)	136, 250, 412, 785, 807, 874, 906
Bst2UI	CCWGG	1 cut(s)	349
Bst4CI	ACNGT	3 cut(s)	756, 1018, 1030
Bst6I	CTCTTC	4 cut(s)	90, 257, 570, 830
BstC8I	GCNNGC	4 cut(s)	30, 345, 450, 795
BstDEI	CTNAG	5 cut(s)	213, 360, 540, 770, 878
BstENI	CCTNNNNNAGG	1 cut(s)	693
BstF5I	GGATG	5 cut(s)	16, 273, 589, 859, 1009
BstFNI	CGCG	2 cut(s)	243, 409
BstKTI	GATC	7 cut(s)	139, 253, 415, 788, 810, 877, 909
BstMAI	GTCTC	2 cut(s)	35, 239
BstMBI	GATC	7 cut(s)	136, 250, 412, 785, 807, 874, 906
BstMWI	GCNNNNNNNGC	1 cut(s)	790
BstNI	CCWGG	1 cut(s)	349
BstNSI	RCATGY	2 cut(s)	347, 964
BstSCI	CCNGG	2 cut(s)	347, 664
BstSFI	CTRYAG	1 cut(s)	446
BstUI	CGCG	2 cut(s)	243, 409
BstV1I	GCAGC	2 cut(s)	229, 878
BstV2I	GAAGAC	2 cut(s)	45, 522
BstX2I	RGATCY	2 cut(s)	250, 412
BstXI	CCANNNNNNTGG	2 cut(s)	200, 896
BstYI	RGATCY	2 cut(s)	250, 412
BsuRI	GGCC	2 cut(s)	465, 717
BtsCI	GGATG	5 cut(s)	16, 273, 589, 859, 1009
BtsIMutI	CAGTG	1 cut(s)	947
BtuMI	TCGCGA	1 cut(s)	243
Cac8I	GCNNGC	4 cut(s)	30, 345, 450, 795
Cfr13I	GGNCC	1 cut(s)	1026
CseI	GACGC	1 cut(s)	52
Csp6I	GTAC	1 cut(s)	523
CspCI	CAANNNNNGTGG	2 cut(s)	981, 1016
CviAII	CATG	4 cut(s)	134, 140, 344, 961
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	5 cut(s)	213, 360, 540, 770, 878
DpnI	GATC	7 cut(s)	138, 252, 414, 787, 809, 876, 908
DpnII	GATC	7 cut(s)	136, 250, 412, 785, 807, 874, 906
DraI	TTTAAA	1 cut(s)	21
DrdI	GACNNNNNNGTC	1 cut(s)	49
DriI	GACNNNNNGTC	2 cut(s)	535, 640
DseDI	GACNNNNNNGTC	1 cut(s)	49
Eam1104I	CTCTTC	4 cut(s)	90, 257, 570, 830
Eam1105I	GACNNNNNGTC	2 cut(s)	535, 640
EarI	CTCTTC	4 cut(s)	90, 257, 570, 830
Eco47I	GGWCC	1 cut(s)	1026
Eco57I	CTGAAG	1 cut(s)	714
EcoNI	CCTNNNNNAGG	1 cut(s)	693
EcoRII	CCWGG	1 cut(s)	347
Esp3I	CGTCTC	1 cut(s)	35
FaeI	CATG	4 cut(s)	137, 143, 347, 964
FaiI	YATR	9 cut(s)	135, 141, 170, 345, 396, 494, 846, 848, 962
FalI	AAGNNNNNCTT	2 cut(s)	222, 254
FaqI	GGGAC	1 cut(s)	400
FatI	CATG	4 cut(s)	133, 139, 343, 960
FauI	CCCGC	1 cut(s)	402
FbaI	TGATCA	2 cut(s)	136, 906
FblI	GTMKAC	1 cut(s)	324
Fnu4HI	GCNGC	2 cut(s)	218, 867
FokI	GGATG	5 cut(s)	23, 280, 596, 866, 1016
Fsp4HI	GCNGC	2 cut(s)	218, 867
FspBI	CTAG	2 cut(s)	437, 710
GluI	GCNGC	2 cut(s)	218, 867
GsaI	CCCAGC	1 cut(s)	154
HaeIII	GGCC	2 cut(s)	465, 717
HapII	CCGG	1 cut(s)	666
HgaI	GACGC	1 cut(s)	52
Hin1II	CATG	4 cut(s)	137, 143, 347, 964
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HindIII	AAGCTT	1 cut(s)	680
HinfI	GANTC	4 cut(s)	78, 158, 188, 209
HpaI	GTTAAC	1 cut(s)	628
HpaII	CCGG	1 cut(s)	666
HphI	GGTGA	2 cut(s)	490, 580
Hpy166II	GTNNAC	2 cut(s)	325, 628
Hpy188I	TCNGA	6 cut(s)	88, 214, 361, 766, 807, 989
Hpy188III	TCNNGA	4 cut(s)	242, 254, 692, 872
Hpy8I	GTNNAC	2 cut(s)	325, 628
HpyAV	CCTTC	4 cut(s)	103, 172, 589, 689
HpyCH4III	ACNGT	3 cut(s)	756, 1018, 1030
HpyCH4IV	ACGT	1 cut(s)	90
HpyCH4V	TGCA	8 cut(s)	32, 143, 404, 420, 425, 448, 734, 866
HpyF10VI	GCNNNNNNNGC	1 cut(s)	790
HpyF3I	CTNAG	5 cut(s)	213, 360, 540, 770, 878
HpySE526I	ACGT	1 cut(s)	90
Hsp92II	CATG	4 cut(s)	137, 143, 347, 964
Ksp22I	TGATCA	2 cut(s)	136, 906
KspAI	GTTAAC	1 cut(s)	628
Kzo9I	GATC	7 cut(s)	136, 250, 412, 785, 807, 874, 906
LguI	GCTCTTC	2 cut(s)	90, 570
LmnI	GCTCC	1 cut(s)	841
Lsp1109I	GCAGC	2 cut(s)	229, 878
LweI	GCATC	2 cut(s)	41, 853
MaeI	CTAG	2 cut(s)	437, 710
MaeII	ACGT	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	610, 881
MalI	GATC	7 cut(s)	138, 252, 414, 787, 809, 876, 908
MboI	GATC	7 cut(s)	136, 250, 412, 785, 807, 874, 906
MflI	RGATCY	2 cut(s)	250, 412
MhlI	GDGCHC	1 cut(s)	67
MluCI	AATT	4 cut(s)	69, 115, 162, 195
MlyI	GAGTC	1 cut(s)	72
MseI	TTAA	4 cut(s)	20, 198, 228, 627
MslI	CAYNNNNRTG	2 cut(s)	138, 557
MspI	CCGG	1 cut(s)	666
MspR9I	CCNGG	2 cut(s)	349, 666
MvaI	CCWGG	1 cut(s)	349
MvnI	CGCG	2 cut(s)	243, 409
MwoI	GCNNNNNNNGC	1 cut(s)	790
NciI	CCSGG	1 cut(s)	666
NdeII	GATC	7 cut(s)	136, 250, 412, 785, 807, 874, 906
NlaIII	CATG	4 cut(s)	137, 143, 347, 964
NlaIV	GGNNCC	1 cut(s)	414
NmuCI	GTSAC	1 cut(s)	881
NruI	TCGCGA	1 cut(s)	243
NspI	RCATGY	2 cut(s)	347, 964
PaeI	GCATGC	1 cut(s)	347
PciSI	GCTCTTC	2 cut(s)	90, 570
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PfeI	GAWTC	3 cut(s)	158, 188, 209
PkrI	GCNGC	2 cut(s)	219, 868
PleI	GAGTC	1 cut(s)	72
PpsI	GAGTC	1 cut(s)	72
PshBI	ATTAAT	1 cut(s)	198
Psp6I	CCWGG	1 cut(s)	347
PspFI	CCCAGC	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	414
PspPI	GGNCC	1 cut(s)	1026
PstI	CTGCAG	1 cut(s)	450
PsuI	RGATCY	2 cut(s)	250, 412
RruI	TCGCGA	1 cut(s)	243
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
RseI	CAYNNNNRTG	2 cut(s)	138, 557
SapI	GCTCTTC	2 cut(s)	90, 570
SaqAI	TTAA	4 cut(s)	20, 198, 228, 627
SatI	GCNGC	2 cut(s)	218, 867
Sau3AI	GATC	7 cut(s)	136, 250, 412, 785, 807, 874, 906
Sau96I	GGNCC	1 cut(s)	1026
SchI	GAGTC	1 cut(s)	72
ScrFI	CCNGG	2 cut(s)	349, 666
SduI	GDGCHC	1 cut(s)	67
SfaNI	GCATC	2 cut(s)	41, 853
SfcI	CTRYAG	1 cut(s)	446
SinI	GGWCC	1 cut(s)	1026
SmiMI	CAYNNNNRTG	2 cut(s)	138, 557
SmlI	CTYRAG	2 cut(s)	467, 719
SmoI	CTYRAG	2 cut(s)	467, 719
SphI	GCATGC	1 cut(s)	347
Sse9I	AATT	4 cut(s)	69, 115, 162, 195
SsiI	CCGC	1 cut(s)	409
SspI	AATATT	1 cut(s)	895
SspMI	CTAG	2 cut(s)	437, 710
StyD4I	CCNGG	2 cut(s)	347, 664
TaaI	ACNGT	3 cut(s)	756, 1018, 1030
TaiI	ACGT	1 cut(s)	93
TasI	AATT	4 cut(s)	69, 115, 162, 195
TatI	WGTACW	1 cut(s)	522
TfiI	GAWTC	3 cut(s)	158, 188, 209
Tru1I	TTAA	4 cut(s)	20, 198, 228, 627
Tru9I	TTAA	4 cut(s)	20, 198, 228, 627
TscAI	CASTG	1 cut(s)	954
TseFI	GTSAC	1 cut(s)	881
TseI	GCWGC	2 cut(s)	217, 866
Tsp45I	GTSAC	1 cut(s)	881
TspDTI	ATGAA	4 cut(s)	185, 191, 575, 925
TspGWI	ACGGA	2 cut(s)	274, 311
TspRI	CASTG	1 cut(s)	954
VpaK11BI	GGWCC	1 cut(s)	1026
VspI	ATTAAT	1 cut(s)	198
XagI	CCTNNNNNAGG	1 cut(s)	693
XapI	RAATTY	1 cut(s)	115
XceI	RCATGY	2 cut(s)	347, 964
XmiI	GTMKAC	1 cut(s)	324
XspI	CTAG	2 cut(s)	437, 710

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.