Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003832

Physical Location & Seq

Genomic Coordinates Forward (+)

20566273 .. 20569796

Gene Structure 3524 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27601.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGCATCGCATACCTTCATCATCATTGTGGGAAGTCAAATCTCGAGAGAGGAGGGAAGTTCGTACCCCTAGTGTCACTCTTGAAGGCGATATCTTTCAGCCCAGTGGTCTTTTGACTGGTGGAAGCCGCAAGGGTGGGGGTGATCTGTTAAGGCAGCTTCATGAGCTGGCTGAAGCTGAGCTAAAACTCTCTGAGCATCAGAAAAGGTTGACTGAGATTGAAGCTAAGATAAGAGAGATTCAACCTCTTCACAAGAAGTTCGTGGAGCTTAAACAACAGTTAGAACTCAAATCATATGACCTTAAATTATTTCAGGGCAGGGCTGAACAAAATGAGCATCATAAGCTTGGTGAATTAGTAAAGAGGATTGAGCTAGAGCTACAAGAAGCTAATACTGCAGCCAAAGAAAAGAAACTTTTGCATGAAGATTGTATGAATAAAGTGTCATTTCTTGAGAAATCAATCAAAGAGCATGCCAACAGTCGGGAGGGAAGGCTGAAAGATTTGGAAAAGAAGATCAAAGAGACAAAAGCTCTACTCCAGTCAGCTTCAAAGGATCTCAAGGGACATGAAAATGAAAAGGAGAAGCTTATTATGGAAAAGGATGTTGTTTTAAAAGAGCTTGCATCTTTGGAGCTCAGTTGTCTTCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0000796 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

218

Amino Acids

25.01

Weight (kDa)

8.68

Isoelectric Point (pI)

46.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47460 AT3G47460 AT5G62410
fragaria_vesca	FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g27331 FvH4_7g27350 FvH4_7g27351 FvH4_7g27370 FvH4_7g27601 FvH4_7g27643 FvH4_7g27644 FvH4_7g27690 FvH4_7g28371 FvH4_7g28372 FvH4_7g28800
malus_domestica	MD01G1182300.v1.1 MD07G1252800.v1.1
prunus_persica	Prupe.2G276400_v2.0.a1
pyrus_communis	pycom01g19230 pycom07g22540
rosa_chinensis	RchiOBHm_Chr1g0374201
rosa_laevigata	RLG00000026756
rosa_multiflora	Rmu_co8310535.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283650
rosa_rugosa	Rorug01G0381300
rosa_samantha	Rh1AG392300 Rh1BG356300 Rh1CG369300 Rh1DG386800
rosa_wichuraiana	Rw1G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	127
AclWI	GGATC	1 cut(s)	564
AcuI	CTGAAG	1 cut(s)	192
AfaI	GTAC	1 cut(s)	64
AfiI	CCNNNNNNNGG	1 cut(s)	483
AgsI	TTSAA	4 cut(s)	83, 221, 242, 552
Alw21I	GWGCWC	1 cut(s)	639
Alw26I	GTCTC	1 cut(s)	518
AlwI	GGATC	1 cut(s)	564
Ama87I	CYCGRG	1 cut(s)	42
ApeKI	GCWGC	2 cut(s)	154, 398
AsuHPI	GGTGA	2 cut(s)	152, 362
AvaI	CYCGRG	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	639
BbsI	GAAGAC	1 cut(s)	638
Bbv12I	GWGCWC	1 cut(s)	639
BbvI	GCAGC	2 cut(s)	166, 410
BcoDI	GTCTC	1 cut(s)	518
BfaI	CTAG	2 cut(s)	69, 374
BfmI	CTRYAG	1 cut(s)	396
BisI	GCNGC	3 cut(s)	127, 155, 399
BlpI	GCTNAGC	1 cut(s)	177
BlsI	GCNGC	3 cut(s)	128, 156, 400
BmeT110I	CYCGRG	1 cut(s)	42
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	4 cut(s)	13, 205, 346, 635
BmuI	ACTGGG	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	638
BpmI	CTGGAG	1 cut(s)	524
Bpu1102I	GCTNAGC	1 cut(s)	177
BpuEI	CTTGAG	2 cut(s)	473, 545
Bsc4I	CCNNNNNNNGG	1 cut(s)	483
Bse1I	ACTGG	3 cut(s)	102, 121, 541
BseGI	GGATG	1 cut(s)	610
BseLI	CCNNNNNNNGG	1 cut(s)	483
BseMII	CTCAG	4 cut(s)	168, 183, 204, 652
BseNI	ACTGG	3 cut(s)	102, 121, 541
BseRI	GAGGAG	1 cut(s)	64
BseXI	GCAGC	2 cut(s)	166, 410
BsiHKAI	GWGCWC	1 cut(s)	639
BsiHKCI	CYCGRG	1 cut(s)	42
BslFI	GGGAC	1 cut(s)	579
BslI	CCNNNNNNNGG	1 cut(s)	483
BsmAI	GTCTC	1 cut(s)	518
BsmFI	GGGAC	1 cut(s)	579
BsoBI	CYCGRG	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	639
Bsp143I	GATC	3 cut(s)	142, 516, 556
Bsp1720I	GCTNAGC	1 cut(s)	177
BspACI	CCGC	1 cut(s)	127
BspCNI	CTCAG	4 cut(s)	169, 184, 205, 651
BspHI	TCATGA	1 cut(s)	160
BspMAI	CTGCAG	1 cut(s)	400
BspPI	GGATC	1 cut(s)	564
BsrI	ACTGG	3 cut(s)	102, 121, 541
BssMI	GATC	3 cut(s)	142, 516, 556
Bst4CI	ACNGT	2 cut(s)	279, 482
Bst6I	CTCTTC	1 cut(s)	252
BstC8I	GCNNGC	3 cut(s)	168, 474, 624
BstDEI	CTNAG	5 cut(s)	177, 192, 213, 225, 638
BstF5I	GGATG	1 cut(s)	610
BstKTI	GATC	3 cut(s)	145, 519, 559
BstMAI	GTCTC	1 cut(s)	518
BstMBI	GATC	3 cut(s)	142, 516, 556
BstMWI	GCNNNNNNNGC	3 cut(s)	163, 343, 395
BstNSI	RCATGY	1 cut(s)	476
BstSFI	CTRYAG	1 cut(s)	396
BstV1I	GCAGC	2 cut(s)	166, 410
BstV2I	GAAGAC	1 cut(s)	638
BstX2I	RGATCY	1 cut(s)	556
BstYI	RGATCY	1 cut(s)	556
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	3 cut(s)	168, 474, 624
CciI	TCATGA	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	63
CviAII	CATG	4 cut(s)	161, 422, 473, 569
CviQI	GTAC	1 cut(s)	63
DdeI	CTNAG	5 cut(s)	177, 192, 213, 225, 638
DpnI	GATC	3 cut(s)	144, 518, 558
DpnII	GATC	3 cut(s)	142, 516, 556
DraI	TTTAAA	1 cut(s)	615
Eam1104I	CTCTTC	1 cut(s)	252
EarI	CTCTTC	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	637
Eco24I	GRGCYC	1 cut(s)	639
Eco32I	GATATC	1 cut(s)	91
Eco53kI	GAGCTC	1 cut(s)	637
Eco57I	CTGAAG	1 cut(s)	192
Eco88I	CYCGRG	1 cut(s)	42
EcoICRI	GAGCTC	1 cut(s)	637
EcoRV	GATATC	1 cut(s)	91
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	639
FaeI	CATG	4 cut(s)	164, 425, 476, 572
FaqI	GGGAC	1 cut(s)	579
FatI	CATG	4 cut(s)	160, 421, 472, 568
FauNDI	CATATG	1 cut(s)	295
Fnu4HI	GCNGC	3 cut(s)	127, 155, 399
FokI	GGATG	1 cut(s)	617
FriOI	GRGCYC	1 cut(s)	639
Fsp4HI	GCNGC	3 cut(s)	127, 155, 399
FspBI	CTAG	2 cut(s)	69, 374
GluI	GCNGC	3 cut(s)	127, 155, 399
GsuI	CTGGAG	1 cut(s)	524
Hin1II	CATG	4 cut(s)	164, 425, 476, 572
HincII	GTYRAC	1 cut(s)	210
HindII	GTYRAC	1 cut(s)	210
HindIII	AAGCTT	2 cut(s)	344, 587
HinfI	GANTC	1 cut(s)	238
HphI	GGTGA	2 cut(s)	152, 362
Hpy166II	GTNNAC	1 cut(s)	210
Hpy188I	TCNGA	2 cut(s)	193, 201
Hpy188III	TCNNGA	6 cut(s)	42, 44, 80, 161, 452, 485
Hpy8I	GTNNAC	1 cut(s)	210
HpyAV	CCTTC	3 cut(s)	24, 77, 486
HpyCH4III	ACNGT	2 cut(s)	279, 482
HpyCH4V	TGCA	4 cut(s)	4, 398, 421, 626
HpyF10VI	GCNNNNNNNGC	3 cut(s)	163, 343, 395
HpyF3I	CTNAG	5 cut(s)	177, 192, 213, 225, 638
Hsp92II	CATG	4 cut(s)	164, 425, 476, 572
Kzo9I	GATC	3 cut(s)	142, 516, 556
LmnI	GCTCC	2 cut(s)	265, 634
LpnPI	CCDG	6 cut(s)	102, 115, 152, 299, 304, 554
Lsp1109I	GCAGC	2 cut(s)	166, 410
LweI	GCATC	4 cut(s)	13, 205, 346, 635
MaeI	CTAG	2 cut(s)	69, 374
MaeIII	GTNAC	1 cut(s)	73
MalI	GATC	3 cut(s)	144, 518, 558
MboI	GATC	3 cut(s)	142, 516, 556
MboII	GAAGA	4 cut(s)	239, 437, 526, 638
MflI	RGATCY	1 cut(s)	556
MhlI	GDGCHC	1 cut(s)	639
MluCI	AATT	2 cut(s)	305, 353
MnlI	CCTC	5 cut(s)	42, 45, 255, 357, 481
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	4 cut(s)	149, 270, 303, 614
MslI	CAYNNNNRTG	2 cut(s)	25, 573
MwoI	GCNNNNNNNGC	3 cut(s)	163, 343, 395
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	3 cut(s)	142, 516, 556
NlaIII	CATG	4 cut(s)	164, 425, 476, 572
NmuCI	GTSAC	1 cut(s)	73
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	1 cut(s)	476
PaeI	GCATGC	1 cut(s)	476
PaeR7I	CTCGAG	1 cut(s)	42
PagI	TCATGA	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	238
PkrI	GCNGC	3 cut(s)	128, 156, 400
Psp124BI	GAGCTC	1 cut(s)	639
PstI	CTGCAG	1 cut(s)	400
PsuI	RGATCY	1 cut(s)	556
RsaI	GTAC	1 cut(s)	64
RsaNI	GTAC	1 cut(s)	63
RseI	CAYNNNNRTG	2 cut(s)	25, 573
SacI	GAGCTC	1 cut(s)	639
SaqAI	TTAA	4 cut(s)	149, 270, 303, 614
SatI	GCNGC	3 cut(s)	127, 155, 399
Sau3AI	GATC	3 cut(s)	142, 516, 556
SduI	GDGCHC	1 cut(s)	639
SfaNI	GCATC	4 cut(s)	13, 205, 346, 635
SfcI	CTRYAG	1 cut(s)	396
Sfr274I	CTCGAG	1 cut(s)	42
SlaI	CTCGAG	1 cut(s)	42
SmiMI	CAYNNNNRTG	2 cut(s)	25, 573
SmlI	CTYRAG	3 cut(s)	42, 452, 560
SmoI	CTYRAG	3 cut(s)	42, 452, 560
SphI	GCATGC	1 cut(s)	476
Sse9I	AATT	2 cut(s)	305, 353
SsiI	CCGC	1 cut(s)	127
SspMI	CTAG	2 cut(s)	69, 374
SstI	GAGCTC	1 cut(s)	639
TaaI	ACNGT	2 cut(s)	279, 482
TaqI	TCGA	1 cut(s)	43
TasI	AATT	2 cut(s)	305, 353
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	1 cut(s)	238
Tru1I	TTAA	4 cut(s)	149, 270, 303, 614
Tru9I	TTAA	4 cut(s)	149, 270, 303, 614
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	73
TseI	GCWGC	2 cut(s)	154, 398
Tsp45I	GTSAC	1 cut(s)	73
TspDTI	ATGAA	6 cut(s)	6, 149, 438, 449, 585, 591
TspRI	CASTG	1 cut(s)	109
XceI	RCATGY	1 cut(s)	476
XhoI	CTCGAG	1 cut(s)	42
XspI	CTAG	2 cut(s)	69, 374
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.