Rorug01G0381300

Structural maintenance of chromosomes protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0003832
Physical Location & Seq
Reverse (-)
49345787 .. 49346633
847 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0381300.1

Sequence Viewer

Length: 477 bp
ATGTCTCTCATTCCGGGAAGCTTTTTCGGCAACGGTCGACGGAGCAACATCTTCGACCCGTTCTCGCTCGACATCTGGGACCCGTTCCAGGACTTCCCCTTGATCAACTCCCGCTCAGCTCCACGCTCGGAGACGGCGGCGGTGGCGAACACGCGCATAGACTGGAAGGAGACGCCGGAGGCGCATGTGTTCAAGGCGGACCTGCCGGGGCTGAAAAAGGAGGAGGTGAAGGTGGAGGTGGATGAAGGGAAGGTGCTGCAGATCAGCGGCGAGAGGAAAGTGGAGAAGGAGGACAAGAGCGACAAGTGGCACAGGGTGGAGAGGAGCAGCGGTAAGTTCTTGAGGAGGTTCAGGCTGCCGGAGAATGCTAAGGTGGAGCAGGTGAAGGCGGCGATGGAGAATGGGGTGCTTACTGTCACTGTGCCAAAGGTGGAGGTCAAGAAGCCTGATGTGAAGGCCATTCAGATTTCTGACTAG

Protein Analysis

158

Amino Acids

17.93

Weight (kDa)

8.8

Isoelectric Point (pI)

43.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSP20 PF00011 54 - 157 2.2e-31 Hsp20/alpha crystallin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 370
Acc36I ACCTGC 2 cut(s) 210, 370
AccBSI CCGCTC 1 cut(s) 114
AccI GTMKAC 1 cut(s) 37
AccII CGCG 1 cut(s) 154
AciI CCGC 7 cut(s) 112, 137, 140, 197, 267, 330, 389
AcyI GRCGYC 1 cut(s) 173
AdeI CACNNNGTG 1 cut(s) 316
AfiI CCNNNNNNNGG 1 cut(s) 88
AgsI TTSAA 1 cut(s) 193
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 2 cut(s) 21, 119
AluI AGCT 2 cut(s) 21, 119
Alw26I GTCTC 3 cut(s) 9, 125, 164
AoxI GGCC 1 cut(s) 456
ApeKI GCWGC 3 cut(s) 256, 327, 355
AspLEI GCGC 2 cut(s) 156, 184
AspS9I GGNCC 2 cut(s) 79, 199
AsuC2I CCSGG 2 cut(s) 15, 207
AsuHPI GGTGA 2 cut(s) 238, 394
AvaII GGWCC 2 cut(s) 79, 199
BbvI GCAGC 3 cut(s) 243, 339, 342
BccI CCATC 1 cut(s) 388
BceAI ACGGC 1 cut(s) 150
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 1 cut(s) 89
BclI TGATCA 1 cut(s) 102
BcnI CCSGG 2 cut(s) 15, 207
BcoDI GTCTC 3 cut(s) 9, 125, 164
BfaI CTAG 1 cut(s) 475
BfmI CTRYAG 1 cut(s) 257
BfuAI ACCTGC 2 cut(s) 210, 370
BisI GCNGC 6 cut(s) 138, 257, 268, 328, 356, 390
BlpI GCTNAGC 1 cut(s) 115
BlsI GCNGC 6 cut(s) 139, 258, 269, 329, 357, 391
Bme1390I CCNGG 3 cut(s) 15, 89, 207
Bme18I GGWCC 2 cut(s) 79, 199
BmgT120I GGNCC 2 cut(s) 79, 199
BmiI GGNNCC 2 cut(s) 80, 81
BmrFI CCNGG 3 cut(s) 15, 89, 207
Bpu10I CCTNAGC 1 cut(s) 369
Bpu1102I GCTNAGC 1 cut(s) 115
BpuEI CTTGAG 1 cut(s) 361
BpuMI CCSGG 2 cut(s) 15, 207
BsaHI GRCGYC 1 cut(s) 173
BsaJI CCNNGG 1 cut(s) 206
BsaXI ACNNNNNCTCC 2 cut(s) 316, 346
Bsc4I CCNNNNNNNGG 1 cut(s) 88
Bse1I ACTGG 1 cut(s) 167
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 1 cut(s) 88
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 1 cut(s) 167
BseRI GAGGAG 3 cut(s) 236, 337, 358
BseXI GCAGC 3 cut(s) 243, 339, 342
Bsh1236I CGCG 1 cut(s) 154
Bsh1285I CGRYCG 1 cut(s) 37
BshFI GGCC 1 cut(s) 458
BsiEI CGRYCG 1 cut(s) 37
BsiSI CCGG 4 cut(s) 14, 176, 206, 359
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 88
BsmAI GTCTC 3 cut(s) 9, 125, 164
BsmBI CGTCTC 2 cut(s) 125, 164
BsmFI GGGAC 1 cut(s) 92
BsmI GAATGC 1 cut(s) 370
BsnI GGCC 1 cut(s) 458
Bsp143I GATC 2 cut(s) 102, 261
Bsp1720I GCTNAGC 1 cut(s) 115
BspACI CCGC 7 cut(s) 112, 137, 140, 197, 267, 330, 389
BspANI GGCC 1 cut(s) 458
BspCNI CTCAG 1 cut(s) 128
BspFNI CGCG 1 cut(s) 154
BspLI GGNNCC 2 cut(s) 80, 81
BspMAI CTGCAG 1 cut(s) 261
BspMI ACCTGC 2 cut(s) 210, 370
BsrBI CCGCTC 1 cut(s) 114
BsrI ACTGG 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 206
BssMI GATC 2 cut(s) 102, 261
BssNI GRCGYC 1 cut(s) 173
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 3 cut(s) 35, 415, 421
BstACI GRCGYC 1 cut(s) 173
BstDEI CTNAG 2 cut(s) 115, 369
BstF5I GGATG 1 cut(s) 247
BstFNI CGCG 1 cut(s) 154
BstHHI GCGC 2 cut(s) 156, 184
BstKTI GATC 2 cut(s) 105, 264
BstMAI GTCTC 3 cut(s) 9, 125, 164
BstMBI GATC 2 cut(s) 102, 261
BstMCI CGRYCG 1 cut(s) 37
BstMWI GCNNNNNNNGC 3 cut(s) 27, 143, 181
BstNI CCWGG 1 cut(s) 89
BstNSI RCATGY 1 cut(s) 188
BstSCI CCNGG 3 cut(s) 13, 87, 205
BstSFI CTRYAG 1 cut(s) 257
BstUI CGCG 1 cut(s) 154
BstV1I GCAGC 3 cut(s) 243, 339, 342
BsuRI GGCC 1 cut(s) 458
BtgZI GCGATG 1 cut(s) 407
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 1 cut(s) 417
BveI ACCTGC 2 cut(s) 210, 370
CfoI GCGC 2 cut(s) 156, 184
Cfr13I GGNCC 2 cut(s) 79, 199
CseI GACGC 1 cut(s) 181
CviAII CATG 1 cut(s) 185
CviJI RGCY 6 cut(s) 21, 119, 211, 355, 445, 458
CviKI_1 RGCY 6 cut(s) 21, 119, 211, 355, 445, 458
DdeI CTNAG 2 cut(s) 115, 369
DpnI GATC 2 cut(s) 104, 263
DpnII GATC 2 cut(s) 102, 261
DraIII CACNNNGTG 1 cut(s) 316
EciI GGCGGA 1 cut(s) 212
Eco47I GGWCC 2 cut(s) 79, 199
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 87
Esp3I CGTCTC 2 cut(s) 125, 164
FaeI CATG 1 cut(s) 188
FaiI YATR 2 cut(s) 158, 186
FaqI GGGAC 1 cut(s) 92
FatI CATG 1 cut(s) 184
FauI CCCGC 1 cut(s) 119
FbaI TGATCA 1 cut(s) 102
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 6 cut(s) 138, 257, 268, 328, 356, 390
FokI GGATG 1 cut(s) 254
Fsp4HI GCNGC 6 cut(s) 138, 257, 268, 328, 356, 390
FspBI CTAG 1 cut(s) 475
GlaI GCGC 2 cut(s) 155, 183
GluI GCNGC 6 cut(s) 138, 257, 268, 328, 356, 390
HaeIII GGCC 1 cut(s) 458
HapII CCGG 4 cut(s) 14, 176, 206, 359
HgaI GACGC 1 cut(s) 181
HhaI GCGC 2 cut(s) 156, 184
Hin1I GRCGYC 1 cut(s) 173
Hin1II CATG 1 cut(s) 188
Hin6I GCGC 2 cut(s) 154, 182
HinP1I GCGC 2 cut(s) 154, 182
HincII GTYRAC 1 cut(s) 38
HindII GTYRAC 1 cut(s) 38
HindIII AAGCTT 1 cut(s) 19
HpaII CCGG 4 cut(s) 14, 176, 206, 359
HphI GGTGA 2 cut(s) 238, 394
Hpy166II GTNNAC 1 cut(s) 38
Hpy188I TCNGA 3 cut(s) 130, 465, 472
Hpy188III TCNNGA 2 cut(s) 340, 439
Hpy8I GTNNAC 1 cut(s) 38
Hpy99I CGWCG 1 cut(s) 42
HpyAV CCTTC 7 cut(s) 160, 223, 239, 244, 280, 379, 448
HpyCH4III ACNGT 3 cut(s) 35, 415, 421
HpyCH4V TGCA 1 cut(s) 259
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 143, 181
HpyF3I CTNAG 2 cut(s) 115, 369
Hsp92I GRCGYC 1 cut(s) 173
Hsp92II CATG 1 cut(s) 188
HspAI GCGC 2 cut(s) 154, 182
KflI GGGWCCC 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 2 cut(s) 102, 261
LmnI GCTCC 4 cut(s) 42, 124, 324, 376
Lsp1109I GCAGC 3 cut(s) 243, 339, 342
MaeI CTAG 1 cut(s) 475
MaeIII GTNAC 1 cut(s) 415
MalI GATC 2 cut(s) 104, 263
MbiI CCGCTC 1 cut(s) 114
MboI GATC 2 cut(s) 102, 261
MboII GAAGA 1 cut(s) 43
MspA1I CMGCKG 2 cut(s) 267, 330
MspI CCGG 4 cut(s) 14, 176, 206, 359
MspR9I CCNGG 3 cut(s) 15, 89, 207
Mva1269I GAATGC 1 cut(s) 370
MvaI CCWGG 1 cut(s) 89
MvnI CGCG 1 cut(s) 154
MwoI GCNNNNNNNGC 3 cut(s) 27, 143, 181
NciI CCSGG 2 cut(s) 15, 207
NdeII GATC 2 cut(s) 102, 261
NlaIII CATG 1 cut(s) 188
NlaIV GGNNCC 2 cut(s) 80, 81
NmuCI GTSAC 1 cut(s) 415
NspI RCATGY 1 cut(s) 188
PaqCI CACCTGC 1 cut(s) 370
PctI GAATGC 1 cut(s) 370
PfoI TCCNGGA 2 cut(s) 13, 87
PkrI GCNGC 6 cut(s) 139, 258, 269, 329, 357, 391
PpuMI RGGWCCY 1 cut(s) 79
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 2 cut(s) 80, 81
PspPI GGNCC 2 cut(s) 79, 199
PspPPI RGGWCCY 1 cut(s) 79
PstI CTGCAG 1 cut(s) 261
SalI GTCGAC 1 cut(s) 36
SatI GCNGC 6 cut(s) 138, 257, 268, 328, 356, 390
Sau3AI GATC 2 cut(s) 102, 261
Sau96I GGNCC 2 cut(s) 79, 199
ScrFI CCNGG 3 cut(s) 15, 89, 207
SfcI CTRYAG 1 cut(s) 257
SinI GGWCC 2 cut(s) 79, 199
SmlI CTYRAG 1 cut(s) 340
SmoI CTYRAG 1 cut(s) 340
SsiI CCGC 7 cut(s) 112, 137, 140, 197, 267, 330, 389
SspMI CTAG 1 cut(s) 475
StyD4I CCNGG 3 cut(s) 13, 87, 205
TaaI ACNGT 3 cut(s) 35, 415, 421
TaqI TCGA 3 cut(s) 37, 54, 69
TauI GCSGC 3 cut(s) 140, 270, 392
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 415
TseI GCWGC 3 cut(s) 256, 327, 355
Tsp45I GTSAC 1 cut(s) 415
TspDTI ATGAA 1 cut(s) 258
TspGWI ACGGA 1 cut(s) 55
TspRI CASTG 1 cut(s) 424
VpaK11BI GGWCC 2 cut(s) 79, 199
XceI RCATGY 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 37
XspI CTAG 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.