Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003832

Physical Location & Seq

Genomic Coordinates Reverse (-)

20470227 .. 20471489

Gene Structure 1263 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g27351.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGTCGCTGCTGGTAGCGGCCCGCAAGTGAGGGCCGCCAATCTGCAGGAGCTGGTGTGTAAGCAAGGCCAGGCAGGAATTACTAAGGCCACTGTGTCGATTGTCTTCGATAATTCGGACCGGGCGCGCAGTCCCCTCGGGTATGAGGCCCATTCGGAACTCACGGTCACGCGGCAGATTGTGGTTGGTGGGAGGAACAAGTACTTGATCAACGGGAAACTTGCGCAGCCGAGTCAGGTCCAGAATCTTTTTCATTCGGTGCAGCTCAATGTGAATAATCCACATTTTTTGATTATGCTAGGCCGAATTACCAAGGTTTTGAATATGAAACCGCCCGAGATTTTGTCTATGCTTGAAGAGGCTGCCGGGACGAGAATGTATGAGACCAAAAAGGAAGCGGCTCTTAAGACACTTGAGAAGAAGCAGAGTAAAGTTGATGAGATAAATAAGCTTCTGGACCATGAGATACTGCCTGCATTGGACAAGTTGAGGAGAGAAAGGACACAGTATATGCAATGGGCTAATGGCAATGCTGACTTGGATCGGCTCAAGAGGTTTTGCATTGCTTATGAATATGTTCAAGCGGAGAGGATAAGGGACAGTGCAGTTTATGAGGTGGAACAAGTGAAGGCCAATTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000793 GO:0000796 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0044815

KEGG Pathways

Metabolic & Signaling

ko04111 map04111

Pfam Domains

Protein Families

SMC_N SMC_hinge

Protein Analysis

214

Amino Acids

24.05

Weight (kDa)

9.28

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SMC_N	PF02463	8 - 92	1.8e-11	RecF/RecN/SMC N terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G47460 AT3G47460 AT5G62410
fragaria_vesca	FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g25682 FvH4_7g27331 FvH4_7g27350 FvH4_7g27351 FvH4_7g27370 FvH4_7g27601 FvH4_7g27643 FvH4_7g27644 FvH4_7g27690 FvH4_7g28371 FvH4_7g28372 FvH4_7g28800
malus_domestica	MD01G1182300.v1.1 MD07G1252800.v1.1
prunus_persica	Prupe.2G276400_v2.0.a1
pyrus_communis	pycom01g19230 pycom07g22540
rosa_chinensis	RchiOBHm_Chr1g0374201
rosa_laevigata	RLG00000026756
rosa_multiflora	Rmu_co8310535.1_g000001
rosa_roxburghii	Rroxscaffold_4G00283650
rosa_rugosa	Rorug01G0381300
rosa_samantha	Rh1AG392300 Rh1BG356300 Rh1CG369300 Rh1DG386800
rosa_wichuraiana	Rw1G034340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	225
AccII	CGCG	2 cut(s)	127, 172
AciI	CCGC	7 cut(s)	18, 23, 36, 172, 332, 398, 584
AclWI	GGATC	1 cut(s)	549
AfaI	GTAC	1 cut(s)	203
AflII	CTTAAG	1 cut(s)	404
AgsI	TTSAA	3 cut(s)	322, 356, 581
AjnI	CCWGG	1 cut(s)	69
AluBI	AGCT	3 cut(s)	52, 265, 451
AluI	AGCT	3 cut(s)	52, 265, 451
Alw26I	GTCTC	1 cut(s)	377
AlwI	GGATC	1 cut(s)	549
AlwNI	CAGNNNCTG	1 cut(s)	52
Ama87I	CYCGRG	2 cut(s)	137, 335
AoxI	GGCC	7 cut(s)	19, 33, 67, 87, 147, 301, 630
ApeKI	GCWGC	4 cut(s)	8, 226, 262, 362
Asp700I	GAANNNNTTC	1 cut(s)	576
AspLEI	GCGC	3 cut(s)	127, 129, 226
AspS9I	GGNCC	6 cut(s)	20, 33, 118, 148, 238, 457
AsuC2I	CCSGG	2 cut(s)	122, 367
AvaI	CYCGRG	2 cut(s)	137, 335
AvaII	GGWCC	3 cut(s)	118, 238, 457
BbsI	GAAGAC	1 cut(s)	97
BbvI	GCAGC	3 cut(s)	238, 274, 349
BcgI	CGANNNNNNTGC	2 cut(s)	118, 152
BciT130I	CCWGG	1 cut(s)	71
BclI	TGATCA	1 cut(s)	207
BcnI	CCSGG	2 cut(s)	122, 367
BcoDI	GTCTC	1 cut(s)	377
BfaI	CTAG	1 cut(s)	299
BfmI	CTRYAG	1 cut(s)	44
BfrI	CTTAAG	1 cut(s)	404
BisI	GCNGC	8 cut(s)	9, 19, 36, 173, 227, 263, 363, 399
BlsI	GCNGC	8 cut(s)	10, 20, 37, 174, 228, 264, 364, 400
BmcAI	AGTACT	1 cut(s)	203
Bme1390I	CCNGG	3 cut(s)	71, 122, 367
Bme18I	GGWCC	3 cut(s)	118, 238, 457
BmeT110I	CYCGRG	2 cut(s)	137, 335
BmgT120I	GGNCC	6 cut(s)	20, 33, 118, 148, 238, 457
BmrFI	CCNGG	3 cut(s)	71, 122, 367
BpiI	GAAGAC	1 cut(s)	97
BpuEI	CTTGAG	2 cut(s)	434, 533
BpuMI	CCSGG	2 cut(s)	122, 367
BsaI	GGTCTC	1 cut(s)	377
BsaJI	CCNNGG	2 cut(s)	136, 312
BsaXI	ACNNNNNCTCC	2 cut(s)	41, 71
Bse3DI	GCAATG	3 cut(s)	521, 535, 561
BseBI	CCWGG	1 cut(s)	71
BseDI	CCNNGG	2 cut(s)	136, 312
BseMI	GCAATG	3 cut(s)	521, 535, 561
BsePI	GCGCGC	1 cut(s)	125
BseRI	GAGGAG	1 cut(s)	505
BseXI	GCAGC	3 cut(s)	238, 274, 349
BsgI	GTGCAG	2 cut(s)	281, 624
Bsh1236I	CGCG	2 cut(s)	127, 172
BshFI	GGCC	7 cut(s)	21, 35, 69, 89, 149, 303, 632
BsiHKCI	CYCGRG	2 cut(s)	137, 335
BsiSI	CCGG	2 cut(s)	121, 366
BslFI	GGGAC	3 cut(s)	117, 382, 611
BsmAI	GTCTC	1 cut(s)	377
BsmFI	GGGAC	3 cut(s)	117, 382, 611
BsnI	GGCC	7 cut(s)	21, 35, 69, 89, 149, 303, 632
Bso31I	GGTCTC	1 cut(s)	377
BsoBI	CYCGRG	2 cut(s)	137, 335
Bsp143I	GATC	2 cut(s)	207, 541
BspACI	CCGC	7 cut(s)	18, 23, 36, 172, 332, 398, 584
BspANI	GGCC	7 cut(s)	21, 35, 69, 89, 149, 303, 632
BspFNI	CGCG	2 cut(s)	127, 172
BspMAI	CTGCAG	1 cut(s)	48
BspPI	GGATC	1 cut(s)	549
BspTI	CTTAAG	1 cut(s)	404
BspTNI	GGTCTC	1 cut(s)	377
BsrDI	GCAATG	3 cut(s)	521, 535, 561
BssECI	CCNNGG	2 cut(s)	136, 312
BssHII	GCGCGC	1 cut(s)	125
BssMI	GATC	2 cut(s)	207, 541
BssT1I	CCWWGG	1 cut(s)	312
Bst2UI	CCWGG	1 cut(s)	71
Bst4CI	ACNGT	4 cut(s)	94, 166, 507, 602
Bst6I	CTCTTC	1 cut(s)	351
BstAFI	CTTAAG	1 cut(s)	404
BstC8I	GCNNGC	3 cut(s)	23, 127, 474
BstDEI	CTNAG	1 cut(s)	84
BstFNI	CGCG	2 cut(s)	127, 172
BstHHI	GCGC	3 cut(s)	127, 129, 226
BstKTI	GATC	2 cut(s)	210, 544
BstMAI	GTCTC	1 cut(s)	377
BstMBI	GATC	2 cut(s)	207, 541
BstNI	CCWGG	1 cut(s)	71
BstSCI	CCNGG	3 cut(s)	69, 120, 365
BstSFI	CTRYAG	1 cut(s)	44
BstUI	CGCG	2 cut(s)	127, 172
BstV1I	GCAGC	3 cut(s)	238, 274, 349
BstV2I	GAAGAC	1 cut(s)	97
BsuRI	GGCC	7 cut(s)	21, 35, 69, 89, 149, 303, 632
BtsIMutI	CAGTG	2 cut(s)	90, 607
Cac8I	GCNNGC	3 cut(s)	23, 127, 474
CaiI	CAGNNNCTG	1 cut(s)	52
CfoI	GCGC	3 cut(s)	127, 129, 226
Cfr13I	GGNCC	6 cut(s)	20, 33, 118, 148, 238, 457
CpoI	CGGWCCG	1 cut(s)	118
Csp6I	GTAC	1 cut(s)	202
CspCI	CAANNNNNGTGG	2 cut(s)	270, 305
CspI	CGGWCCG	1 cut(s)	118
CviAII	CATG	1 cut(s)	461
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	2 cut(s)	209, 543
DpnII	GATC	2 cut(s)	207, 541
Eam1104I	CTCTTC	1 cut(s)	351
EarI	CTCTTC	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	312
Eco31I	GGTCTC	1 cut(s)	377
Eco47I	GGWCC	3 cut(s)	118, 238, 457
Eco88I	CYCGRG	2 cut(s)	137, 335
EcoRII	CCWGG	1 cut(s)	69
EcoT14I	CCWWGG	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	312
FaeI	CATG	1 cut(s)	464
FalI	AAGNNNNNCTT	2 cut(s)	387, 419
FaqI	GGGAC	3 cut(s)	117, 382, 611
FatI	CATG	1 cut(s)	460
FauI	CCCGC	1 cut(s)	30
FbaI	TGATCA	1 cut(s)	207
Fnu4HI	GCNGC	8 cut(s)	9, 19, 36, 173, 227, 263, 363, 399
Fsp4HI	GCNGC	8 cut(s)	9, 19, 36, 173, 227, 263, 363, 399
FspBI	CTAG	1 cut(s)	299
FspI	TGCGCA	1 cut(s)	225
GlaI	GCGC	3 cut(s)	126, 128, 225
GluI	GCNGC	8 cut(s)	9, 19, 36, 173, 227, 263, 363, 399
HaeIII	GGCC	7 cut(s)	21, 35, 69, 89, 149, 303, 632
HapII	CCGG	2 cut(s)	121, 366
HhaI	GCGC	3 cut(s)	127, 129, 226
Hin1II	CATG	1 cut(s)	464
Hin6I	GCGC	3 cut(s)	125, 127, 224
HinP1I	GCGC	3 cut(s)	125, 127, 224
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	2 cut(s)	232, 244
HpaII	CCGG	2 cut(s)	121, 366
Hpy188I	TCNGA	3 cut(s)	118, 157, 641
Hpy188III	TCNNGA	3 cut(s)	241, 455, 550
HpyAV	CCTTC	1 cut(s)	622
HpyCH4III	ACNGT	4 cut(s)	94, 166, 507, 602
HpyCH4V	TGCA	6 cut(s)	46, 262, 476, 514, 561, 605
HpyF3I	CTNAG	1 cut(s)	84
Hsp92II	CATG	1 cut(s)	464
HspAI	GCGC	3 cut(s)	125, 127, 224
Ksp22I	TGATCA	1 cut(s)	207
Kzo9I	GATC	2 cut(s)	207, 541
LmnI	GCTCC	1 cut(s)	49
Lsp1109I	GCAGC	3 cut(s)	238, 274, 349
MaeI	CTAG	1 cut(s)	299
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	2 cut(s)	209, 543
MboI	GATC	2 cut(s)	207, 541
MboII	GAAGA	3 cut(s)	97, 368, 430
MluCI	AATT	4 cut(s)	78, 112, 306, 634
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	9 cut(s)	24, 139, 146, 186, 352, 483, 546, 582, 607
MroXI	GAANNNNTTC	1 cut(s)	576
MseI	TTAA	1 cut(s)	405
MspCI	CTTAAG	1 cut(s)	404
MspI	CCGG	2 cut(s)	121, 366
MspR9I	CCNGG	3 cut(s)	71, 122, 367
MvaI	CCWGG	1 cut(s)	71
MvnI	CGCG	2 cut(s)	127, 172
NciI	CCSGG	2 cut(s)	122, 367
NdeII	GATC	2 cut(s)	207, 541
NlaIII	CATG	1 cut(s)	464
NmeAIII	GCCGAG	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	166
NsbI	TGCGCA	1 cut(s)	225
PauI	GCGCGC	1 cut(s)	125
PdmI	GAANNNNTTC	1 cut(s)	576
PfeI	GAWTC	1 cut(s)	244
PkrI	GCNGC	8 cut(s)	10, 20, 37, 174, 228, 264, 364, 400
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
Psp6I	CCWGG	1 cut(s)	69
PspGI	CCWGG	1 cut(s)	69
PspPI	GGNCC	6 cut(s)	20, 33, 118, 148, 238, 457
PstI	CTGCAG	1 cut(s)	48
PstNI	CAGNNNCTG	1 cut(s)	52
PteI	GCGCGC	1 cut(s)	125
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
Rsr2I	CGGWCCG	1 cut(s)	118
RsrII	CGGWCCG	1 cut(s)	118
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	8 cut(s)	9, 19, 36, 173, 227, 263, 363, 399
Sau3AI	GATC	2 cut(s)	207, 541
Sau96I	GGNCC	6 cut(s)	20, 33, 118, 148, 238, 457
ScaI	AGTACT	1 cut(s)	203
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	3 cut(s)	71, 122, 367
SetI	ASST	7 cut(s)	54, 240, 267, 318, 453, 557, 618
SfcI	CTRYAG	1 cut(s)	44
SinI	GGWCC	3 cut(s)	118, 238, 457
SmlI	CTYRAG	3 cut(s)	404, 413, 548
SmoI	CTYRAG	3 cut(s)	404, 413, 548
Sse9I	AATT	4 cut(s)	78, 112, 306, 634
SsiI	CCGC	7 cut(s)	18, 23, 36, 172, 332, 398, 584
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	3 cut(s)	69, 120, 365
StyI	CCWWGG	1 cut(s)	312
TaaI	ACNGT	4 cut(s)	94, 166, 507, 602
TaqI	TCGA	2 cut(s)	98, 108
TasI	AATT	4 cut(s)	78, 112, 306, 634
TatI	WGTACW	1 cut(s)	201
TauI	GCSGC	4 cut(s)	21, 38, 175, 401
TfiI	GAWTC	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	2 cut(s)	97, 607
TseFI	GTSAC	1 cut(s)	166
TseI	GCWGC	4 cut(s)	8, 226, 262, 362
Tsp45I	GTSAC	1 cut(s)	166
TspDTI	ATGAA	3 cut(s)	242, 341, 585
TspRI	CASTG	2 cut(s)	97, 607
Vha464I	CTTAAG	1 cut(s)	404
VpaK11BI	GGWCC	3 cut(s)	118, 238, 457
XmnI	GAANNNNTTC	1 cut(s)	576
XspI	CTAG	1 cut(s)	299
ZrmI	AGTACT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.