FvH4_7g34090

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0005922
Physical Location & Seq
Forward (+)
24087159 .. 24088886
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g34090.t1

Sequence Viewer

Length: 1182 bp
ATGGTTGCTCGTGTTGCCCTAGCAACTCAGGCTCTCTTCCTCATCCTCCTCGTCATTACGCCTCACCTCGTATTGGCAGGAGCCTCCCATGGCGGCGGCAAGAAAGGAGGAGCCGCCGGTCACAAGAAACCAGCCAAACCTTATAAACCAATGAAAAGACCGGCACCCCATGGCAAGAAACCAACGGCACCTCATCACAAACCAGCACCAACTCATAAACCAGCGTCAACTCATAAACCAGTGCCACCACATAAACCCGTGGCACCACATAAACCAGCGGTAGTACCTCCTCATAAACCAGTTGTAAACAACAGAAAACCAGCGGCCCCTTATAGACCGATTGTACAGAGCACAAGCATTCCTCGACCAGGGATAGCAGCTCCGGCAGGTCCAGGAGGTAACGCCGGTAAAGGCAACGGTGCCGGTATCACATACCACGGAGGCCCTCTGCTTTCCGGGGAGGTCAACCTCTCCATCTTATTTTACGGGCAATGGCAGAGCAGAAGCAAGGACCTGATCAGGAGTTTCATCAACTCGTTCGGGATCGCAGGGTCTGCCTTTTGCAAGTGGAGGGGCATTATCGAAAGCTACTCCAAGAAACCAATCACATTCAAAGTGGGGACTCAGCAGAGCGACGACAACGCCTCCTTGGGCAAAGCGTTGAACGTAGACTTCATCAAGATGCTGGTGAATAAGGCTAACCCTGGCAAGCCAAACTCTATTGCTGTCATCTTCGTGCACAAGGATATTGGAACACAGGAGCTGTGCAGGGGCAAATGCTACGACCATGGATCCTTTGACGGCAAGTTGCCCTATCTCATTGTCGCAAACCCGGAAGTCGAGTGCCCCGGTGCTTGTGGCTTGCCCTTCACAAAGGCCAGCTACGGTCCTCCAGGCCCTGTCGTGAAACCACCAAACGGCGACATGGGAGTTGATGCTGCCGTCGTCAACTTCGCCTCGGGGTTGGCTTCAGTACTCACTAACCCATTGAATGCCGGGTTTTCGAAACCAGGACCCAAAACCTGGGCGATCGAGGCTGGCAACGCCTGCGAGGATAACTTCGGAAAGTTGACTATTGACGCAGCCGGTGTGGGCTACAATGCCGTTGGAGAAAAGAATCTCAGGTTCGTGCTTCCAGCAATATGGGATCCAACGTCGAACGCATGCTGGGCCCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

394

Amino Acids

41.12

Weight (kDa)

9.83

Isoelectric Point (pI)

35.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 143 - 391 3.9e-63 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 377
AccB1I GGYRCC 4 cut(s) 163, 187, 262, 419
AccB7I CCANNNNNTGG 1 cut(s) 1023
AccI GTMKAC 1 cut(s) 669
AciI CCGC 5 cut(s) 93, 96, 114, 278, 323
AclWI GGATC 5 cut(s) 551, 786, 799, 1142, 1155
AcuI CTGAAG 1 cut(s) 954
AfaI GTAC 3 cut(s) 285, 345, 975
AfiI CCNNNNNNNGG 4 cut(s) 73, 368, 917, 1023
AgsI TTSAA 3 cut(s) 613, 664, 991
AjnI CCWGG 6 cut(s) 367, 391, 703, 892, 1009, 1022
AluBI AGCT 4 cut(s) 380, 588, 763, 882
AluI AGCT 4 cut(s) 380, 588, 763, 882
Alw21I GWGCWC 2 cut(s) 353, 741
Alw44I GTGCAC 1 cut(s) 737
AlwI GGATC 5 cut(s) 551, 786, 799, 1142, 1155
AlwNI CAGNNNCTG 3 cut(s) 554, 763, 899
Ama87I CYCGRG 1 cut(s) 958
AoxI GGCC 5 cut(s) 324, 442, 876, 895, 1170
ApaI GGGCCC 1 cut(s) 1174
ApaLI GTGCAC 1 cut(s) 737
ApeKI GCWGC 3 cut(s) 377, 938, 1082
AspS9I GGNCC 9 cut(s) 325, 389, 443, 511, 887, 896, 1013, 1170, 1171
AsuC2I CCSGG 4 cut(s) 457, 833, 849, 997
AsuHPI GGTGA 2 cut(s) 56, 700
AsuII TTCGAA 1 cut(s) 1004
AvaI CYCGRG 1 cut(s) 958
AvaII GGWCC 4 cut(s) 389, 511, 887, 1013
BaeGI GKGCMC 3 cut(s) 741, 848, 1174
BamHI GGATCC 2 cut(s) 791, 1147
BanI GGYRCC 4 cut(s) 163, 187, 262, 419
BanII GRGCYC 1 cut(s) 1174
BauI CACGAG 1 cut(s) 9
Bbv12I GWGCWC 2 cut(s) 353, 741
BbvI GCAGC 3 cut(s) 389, 925, 1094
BccI CCATC 1 cut(s) 482
BceAI ACGGC 5 cut(s) 201, 817, 926, 934, 1088
BciT130I CCWGG 6 cut(s) 369, 393, 705, 894, 1011, 1024
BclI TGATCA 1 cut(s) 516
BcnI CCSGG 4 cut(s) 457, 833, 849, 997
BfaI CTAG 1 cut(s) 20
BfuAI ACCTGC 1 cut(s) 377
BisI GCNGC 7 cut(s) 94, 97, 114, 324, 378, 939, 1083
BlsI GCNGC 7 cut(s) 95, 98, 115, 325, 379, 940, 1084
BmcAI AGTACT 1 cut(s) 975
Bme18I GGWCC 4 cut(s) 389, 511, 887, 1013
BmeT110I CYCGRG 1 cut(s) 958
BmgT120I GGNCC 9 cut(s) 325, 389, 443, 511, 887, 896, 1013, 1170, 1171
BmsI GCATC 2 cut(s) 672, 925
BpmI CTGGAG 1 cut(s) 876
Bpu14I TTCGAA 1 cut(s) 1004
BpuMI CCSGG 4 cut(s) 457, 833, 849, 997
BsaXI ACNNNNNCTCC 2 cut(s) 629, 659
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 368, 917, 1023
Bse118I RCCGGY 5 cut(s) 116, 160, 404, 422, 1085
Bse1I ACTGG 2 cut(s) 239, 299
Bse3DI GCAATG 1 cut(s) 497
BseBI CCWGG 6 cut(s) 369, 393, 705, 894, 1011, 1024
BseGI GGATG 1 cut(s) 42
BseLI CCNNNNNNNGG 4 cut(s) 73, 368, 917, 1023
BseMI GCAATG 1 cut(s) 497
BseMII CTCAG 3 cut(s) 41, 638, 1135
BseNI ACTGG 2 cut(s) 239, 299
BseRI GAGGAG 3 cut(s) 38, 123, 279
BseSI GKGCMC 3 cut(s) 741, 848, 1174
BseXI GCAGC 3 cut(s) 389, 925, 1094
BseYI CCCAGC 1 cut(s) 1167
BsgI GTGCAG 1 cut(s) 787
Bsh1285I CGRYCG 1 cut(s) 1032
BshFI GGCC 5 cut(s) 326, 444, 878, 897, 1172
BshNI GGYRCC 4 cut(s) 163, 187, 262, 419
BsiEI CGRYCG 1 cut(s) 1032
BsiHKAI GWGCWC 2 cut(s) 353, 741
BsiHKCI CYCGRG 1 cut(s) 958
BslFI GGGAC 1 cut(s) 634
BslI CCNNNNNNNGG 4 cut(s) 73, 368, 917, 1023
BsmFI GGGAC 1 cut(s) 634
BsmI GAATGC 2 cut(s) 357, 997
BsnI GGCC 5 cut(s) 326, 444, 878, 897, 1172
BsoBI CYCGRG 1 cut(s) 958
Bsp119I TTCGAA 1 cut(s) 1004
Bsp120I GGGCCC 1 cut(s) 1170
Bsp1286I GDGCHC 4 cut(s) 353, 741, 848, 1174
Bsp1407I TGTACA 1 cut(s) 343
Bsp143I GATC 5 cut(s) 516, 543, 791, 1029, 1147
Bsp19I CCATGG 3 cut(s) 88, 169, 787
BspACI CCGC 5 cut(s) 93, 96, 114, 278, 323
BspANI GGCC 5 cut(s) 326, 444, 878, 897, 1172
BspCNI CTCAG 3 cut(s) 40, 637, 1134
BspMI ACCTGC 1 cut(s) 377
BspPI GGATC 5 cut(s) 551, 786, 799, 1142, 1155
BspT104I TTCGAA 1 cut(s) 1004
BspT107I GGYRCC 4 cut(s) 163, 187, 262, 419
BsrDI GCAATG 1 cut(s) 497
BsrFI RCCGGY 5 cut(s) 116, 160, 404, 422, 1085
BsrGI TGTACA 1 cut(s) 343
BsrI ACTGG 2 cut(s) 239, 299
BssAI RCCGGY 5 cut(s) 116, 160, 404, 422, 1085
BssMI GATC 5 cut(s) 516, 543, 791, 1029, 1147
BssSI CACGAG 1 cut(s) 9
BssT1I CCWWGG 4 cut(s) 88, 169, 648, 787
Bst2BI CACGAG 1 cut(s) 9
Bst2UI CCWGG 6 cut(s) 369, 393, 705, 894, 1011, 1024
Bst4CI ACNGT 2 cut(s) 419, 887
Bst6I CTCTTC 1 cut(s) 41
BstAPI GCANNNNNTGC 2 cut(s) 554, 1047
BstAUI TGTACA 1 cut(s) 343
BstBI TTCGAA 1 cut(s) 1004
BstC8I GCNNGC 6 cut(s) 710, 863, 880, 1039, 1048, 1165
BstDEI CTNAG 3 cut(s) 27, 624, 1121
BstDSI CCRYGG 5 cut(s) 88, 169, 258, 436, 787
BstENI CCTNNNNNAGG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 42
BstKTI GATC 5 cut(s) 519, 546, 794, 1032, 1150
BstMBI GATC 5 cut(s) 516, 543, 791, 1029, 1147
BstMCI CGRYCG 1 cut(s) 1032
BstMWI GCNNNNNNNGC 8 cut(s) 14, 29, 383, 554, 1034, 1043, 1047, 1169
BstNI CCWGG 6 cut(s) 369, 393, 705, 894, 1011, 1024
BstNSI RCATGY 1 cut(s) 1167
BstSLI GKGCMC 3 cut(s) 741, 848, 1174
BstV1I GCAGC 3 cut(s) 389, 925, 1094
BstX2I RGATCY 2 cut(s) 791, 1147
BstXI CCANNNNNNTGG 1 cut(s) 1143
BstYI RGATCY 2 cut(s) 791, 1147
BsuRI GGCC 5 cut(s) 326, 444, 878, 897, 1172
BtgI CCRYGG 5 cut(s) 88, 169, 258, 436, 787
BtsCI GGATG 1 cut(s) 42
BtsIMutI CAGTG 1 cut(s) 246
BveI ACCTGC 1 cut(s) 377
Cac8I GCNNGC 6 cut(s) 710, 863, 880, 1039, 1048, 1165
CaiI CAGNNNCTG 3 cut(s) 554, 763, 899
Cfr10I RCCGGY 5 cut(s) 116, 160, 404, 422, 1085
Cfr13I GGNCC 9 cut(s) 325, 389, 443, 511, 887, 896, 1013, 1170, 1171
CseI GACGC 2 cut(s) 213, 1088
Csp6I GTAC 3 cut(s) 284, 344, 974
CviAII CATG 5 cut(s) 89, 170, 788, 925, 1164
CviQI GTAC 3 cut(s) 284, 344, 974
DdeI CTNAG 3 cut(s) 27, 624, 1121
DpnI GATC 5 cut(s) 518, 545, 793, 1031, 1149
DpnII GATC 5 cut(s) 516, 543, 791, 1029, 1147
Eam1104I CTCTTC 1 cut(s) 41
EarI CTCTTC 1 cut(s) 41
Eco130I CCWWGG 4 cut(s) 88, 169, 648, 787
Eco24I GRGCYC 1 cut(s) 1174
Eco47I GGWCC 4 cut(s) 389, 511, 887, 1013
Eco57I CTGAAG 1 cut(s) 954
Eco88I CYCGRG 1 cut(s) 958
EcoNI CCTNNNNNAGG 1 cut(s) 366
EcoO109I RGGNCCY 5 cut(s) 443, 511, 896, 1013, 1171
EcoRII CCWGG 6 cut(s) 367, 391, 703, 892, 1009, 1022
EcoT14I CCWWGG 4 cut(s) 88, 169, 648, 787
EcoT38I GRGCYC 1 cut(s) 1174
ErhI CCWWGG 4 cut(s) 88, 169, 648, 787
FaeI CATG 5 cut(s) 92, 173, 791, 928, 1167
FaqI GGGAC 1 cut(s) 634
FatI CATG 5 cut(s) 88, 169, 787, 924, 1163
FbaI TGATCA 1 cut(s) 516
FblI GTMKAC 1 cut(s) 669
Fnu4HI GCNGC 7 cut(s) 94, 97, 114, 324, 378, 939, 1083
FokI GGATG 1 cut(s) 29
FriOI GRGCYC 1 cut(s) 1174
Fsp4HI GCNGC 7 cut(s) 94, 97, 114, 324, 378, 939, 1083
FspBI CTAG 1 cut(s) 20
GluI GCNGC 7 cut(s) 94, 97, 114, 324, 378, 939, 1083
GsaI CCCAGC 1 cut(s) 1171
GsuI CTGGAG 1 cut(s) 876
HaeIII GGCC 5 cut(s) 326, 444, 878, 897, 1172
HgaI GACGC 2 cut(s) 213, 1088
Hin1II CATG 5 cut(s) 92, 173, 791, 928, 1167
HincII GTYRAC 4 cut(s) 228, 466, 949, 1071
HindII GTYRAC 4 cut(s) 228, 466, 949, 1071
HinfI GANTC 2 cut(s) 622, 1117
HphI GGTGA 2 cut(s) 56, 700
Hpy166II GTNNAC 7 cut(s) 228, 307, 466, 670, 739, 949, 1071
Hpy188I TCNGA 1 cut(s) 1064
Hpy188III TCNNGA 4 cut(s) 520, 541, 679, 904
Hpy8I GTNNAC 7 cut(s) 228, 307, 466, 670, 739, 949, 1071
Hpy99I CGWCG 3 cut(s) 638, 947, 1159
HpyAV CCTTC 1 cut(s) 877
HpyCH4III ACNGT 2 cut(s) 419, 887
HpyCH4IV ACGT 2 cut(s) 666, 1154
HpyCH4V TGCA 3 cut(s) 564, 739, 768
HpyF10VI GCNNNNNNNGC 8 cut(s) 14, 29, 383, 554, 1034, 1043, 1047, 1169
HpyF3I CTNAG 3 cut(s) 27, 624, 1121
HpySE526I ACGT 2 cut(s) 666, 1154
Hsp92II CATG 5 cut(s) 92, 173, 791, 928, 1167
Ksp22I TGATCA 1 cut(s) 516
Kzo9I GATC 5 cut(s) 516, 543, 791, 1029, 1147
LmnI GCTCC 4 cut(s) 80, 110, 385, 760
Lsp1109I GCAGC 3 cut(s) 389, 925, 1094
LweI GCATC 2 cut(s) 672, 925
MaeI CTAG 1 cut(s) 20
MaeII ACGT 2 cut(s) 666, 1154
MaeIII GTNAC 2 cut(s) 119, 398
MalI GATC 5 cut(s) 518, 545, 793, 1031, 1149
MboI GATC 5 cut(s) 516, 543, 791, 1029, 1147
MboII GAAGA 2 cut(s) 28, 724
MflI RGATCY 2 cut(s) 791, 1147
MhlI GDGCHC 4 cut(s) 353, 741, 848, 1174
MlyI GAGTC 1 cut(s) 616
MmeI TCCRAC 2 cut(s) 1087, 1175
MslI CAYNNNNRTG 2 cut(s) 680, 734
MspA1I CMGCKG 2 cut(s) 278, 323
Mva1269I GAATGC 2 cut(s) 357, 997
MvaI CCWGG 6 cut(s) 369, 393, 705, 894, 1011, 1024
MwoI GCNNNNNNNGC 8 cut(s) 14, 29, 383, 554, 1034, 1043, 1047, 1169
NciI CCSGG 4 cut(s) 457, 833, 849, 997
NcoI CCATGG 3 cut(s) 88, 169, 787
NdeII GATC 5 cut(s) 516, 543, 791, 1029, 1147
NlaIII CATG 5 cut(s) 92, 173, 791, 928, 1167
NmuCI GTSAC 1 cut(s) 119
NspI RCATGY 1 cut(s) 1167
NspV TTCGAA 1 cut(s) 1004
PaeI GCATGC 1 cut(s) 1167
PctI GAATGC 2 cut(s) 357, 997
PfeI GAWTC 1 cut(s) 1117
PflMI CCANNNNNTGG 1 cut(s) 1023
PfoI TCCNGGA 1 cut(s) 391
PkrI GCNGC 7 cut(s) 95, 98, 115, 325, 379, 940, 1084
Ple19I CGATCG 1 cut(s) 1032
PleI GAGTC 1 cut(s) 616
PpsI GAGTC 1 cut(s) 616
PpuMI RGGWCCY 2 cut(s) 511, 1013
PsiI TTATAA 1 cut(s) 144
Psp5II RGGWCCY 2 cut(s) 511, 1013
Psp6I CCWGG 6 cut(s) 367, 391, 703, 892, 1009, 1022
PspFI CCCAGC 1 cut(s) 1167
PspGI CCWGG 6 cut(s) 367, 391, 703, 892, 1009, 1022
PspOMI GGGCCC 1 cut(s) 1170
PspPI GGNCC 9 cut(s) 325, 389, 443, 511, 887, 896, 1013, 1170, 1171
PspPPI RGGWCCY 2 cut(s) 511, 1013
PstNI CAGNNNCTG 3 cut(s) 554, 763, 899
PsuI RGATCY 2 cut(s) 791, 1147
PvuI CGATCG 1 cut(s) 1032
RsaI GTAC 3 cut(s) 285, 345, 975
RsaNI GTAC 3 cut(s) 284, 344, 974
RseI CAYNNNNRTG 2 cut(s) 680, 734
SatI GCNGC 7 cut(s) 94, 97, 114, 324, 378, 939, 1083
Sau3AI GATC 5 cut(s) 516, 543, 791, 1029, 1147
Sau96I GGNCC 9 cut(s) 325, 389, 443, 511, 887, 896, 1013, 1170, 1171
ScaI AGTACT 1 cut(s) 975
SchI GAGTC 1 cut(s) 616
SduI GDGCHC 4 cut(s) 353, 741, 848, 1174
SfaNI GCATC 2 cut(s) 672, 925
SfuI TTCGAA 1 cut(s) 1004
SinI GGWCC 4 cut(s) 389, 511, 887, 1013
SmiMI CAYNNNNRTG 2 cut(s) 680, 734
SphI GCATGC 1 cut(s) 1167
SsiI CCGC 5 cut(s) 93, 96, 114, 278, 323
SspMI CTAG 1 cut(s) 20
StyI CCWWGG 4 cut(s) 88, 169, 648, 787
TaaI ACNGT 2 cut(s) 419, 887
TaiI ACGT 2 cut(s) 669, 1157
TaqI TCGA 6 cut(s) 364, 582, 840, 1004, 1032, 1157
TaqII GACCGA 1 cut(s) 352
TatI WGTACW 2 cut(s) 343, 973
TauI GCSGC 4 cut(s) 96, 99, 116, 326
TfiI GAWTC 1 cut(s) 1117
TscAI CASTG 1 cut(s) 246
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 3 cut(s) 377, 938, 1082
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 3 cut(s) 167, 517, 664
TspGWI ACGGA 1 cut(s) 453
TspRI CASTG 1 cut(s) 246
Van91I CCANNNNNTGG 1 cut(s) 1023
VneI GTGCAC 1 cut(s) 737
VpaK11BI GGWCC 4 cut(s) 389, 511, 887, 1013
XagI CCTNNNNNAGG 1 cut(s) 366
XceI RCATGY 1 cut(s) 1167
XmiI GTMKAC 1 cut(s) 669
XspI CTAG 1 cut(s) 20
ZrmI AGTACT 1 cut(s) 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.