Rh1DG462900

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0005922
Physical Location & Seq
Forward (+)
66575586 .. 66577271
1686 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG462900.1

Sequence Viewer

Length: 1215 bp
ATGCATCAAGGAATTCGACAAAAAGATTTATACCCGCCTAATAAATCAATACTTGTAAAATCAAAGAGGGAAAATAAAATGGTTTTTCGTGTTGCAGTAGCAACTCAGGCTCTCTTGCTAATCCTCCTCCTCACTACGCCTCACTTCGTATTGGCAGGCAAGAAAGGAGGAGGCGGAGGCAAGAAAGGAGGAGGCGGTAAGGGTGGGGCTAAAAAACCATCGGCACCTAAGAATGGTGGAGGCGGGGCCAAGAATAAACCATCGAAACCAGCAACACCTTATAGACCACCTGTAGTAGCCGCGCCCAAAAAACCAGTGGCAGCTTATACACCTCTGCCGGAAGCTGTGGCCACCATTGAAGTGCCTAGACCAGGGACACTATCGAGAGGTCCCGCCTGTAAGGGCAACGGTGAGGGTATCATATACAAGGGAGGCCCTCTCCTGACCGGGGAGCTCAACCTTTCCATCATATTTTACGGCCAATGGCAGAGCCAACACAAGGATCTGATCAGGAGTTTCCTCAGTTCGTTGGCGGTGCCGGGCTCGACGGCGAACCAGTGGTGGGCCATTGTGGAAAGTTACCAGACTGTGGCCAATATGCCCAACCAAGGCCTCCATATCAAAGTGGGCACTCAGTCGAGCGATGACAAGGCCTCCTTGGGCAAAGTTTTGACCAAAGACTTTATCAAGCAGCTTGTGCAGAGGGCCAAGAGCGGCAACCCCAACACTCTCGCTGTCATCTTCGCTCACAAAGATGTCGCAGTTGCAGACCTGTGCAGGGGCAAATGCTACGAGCATGGAGCGTTTGATAACATGCCCTATCTCATTGTCGGAAACCCCGAAGTTGAGTGCCCTGGTTCTTGTGCCATTCCCTTCGCAAAGGCCAGCTACGGCCCTGCAGGCGACACCGTCAAACCACCAAACGGCGACCTTGGCGTTGATGCTACCATCATCAACTTTGCCTCCGGCTTGGCTTCCGTAGTCACTAACCCATTCAACGGCGGATTTTCCAAACCAGGACCCAAAACCTGGGCGATTGAGGCTGGCAACGCCTGCGAGGATATGTTCGGAAGCGGAGCAGGCCCCGGCCAACCCGGAAAGATGACAATCGACGCAGCCGGTTGTGGCTACAATGCCGTTGGAGATGGGGGTGCCAGATTCTTGCTTCCAGCAATTTGGGATCCAAAGTCGTCCACATGCTGGACCCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

404

Amino Acids

42.07

Weight (kDa)

9.55

Isoelectric Point (pI)

34.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 142 - 403 1.3e-82 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 223, 535, 1151
AccB7I CCANNNNNTGG 3 cut(s) 589, 1029, 1200
AccBSI CCGCTC 1 cut(s) 714
AccII CGCG 1 cut(s) 302
AclWI GGATC 3 cut(s) 510, 1175, 1188
AcoI YGGCCR 4 cut(s) 348, 478, 591, 1087
AcsI RAATTY 1 cut(s) 12
AgsI TTSAA 2 cut(s) 359, 997
AjnI CCWGG 4 cut(s) 370, 853, 1015, 1028
AluBI AGCT 5 cut(s) 323, 344, 454, 694, 888
AluI AGCT 5 cut(s) 323, 344, 454, 694, 888
Alw21I GWGCWC 1 cut(s) 456
AlwI GGATC 3 cut(s) 510, 1175, 1188
ApeKI GCWGC 3 cut(s) 320, 691, 1115
ApoI RAATTY 1 cut(s) 12
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 9 cut(s) 246, 389, 434, 564, 705, 893, 1019, 1082, 1203
AsuC2I CCSGG 4 cut(s) 448, 540, 1086, 1095
AsuHPI GGTGA 1 cut(s) 422
AvaII GGWCC 3 cut(s) 389, 1019, 1203
BaeGI GKGCMC 2 cut(s) 632, 854
BalI TGGCCA 2 cut(s) 350, 593
BamHI GGATCC 1 cut(s) 1180
BanI GGYRCC 3 cut(s) 223, 535, 1151
BanII GRGCYC 2 cut(s) 456, 545
Bbv12I GWGCWC 1 cut(s) 456
BbvI GCAGC 3 cut(s) 332, 703, 1127
BccI CCATC 5 cut(s) 226, 268, 473, 956, 1139
BceAI ACGGC 6 cut(s) 493, 564, 907, 940, 1015, 1121
BciT130I CCWGG 4 cut(s) 372, 855, 1017, 1030
BclI TGATCA 1 cut(s) 507
BcnI CCSGG 4 cut(s) 448, 540, 1086, 1095
BfaI CTAG 1 cut(s) 366
BfmI CTRYAG 2 cut(s) 291, 897
BglI GCCNNNNNGGC 1 cut(s) 900
BisI GCNGC 5 cut(s) 300, 321, 692, 715, 1116
BlsI GCNGC 5 cut(s) 301, 322, 693, 716, 1117
Bme1390I CCNGG 8 cut(s) 372, 448, 540, 855, 1017, 1030, 1086, 1095
Bme18I GGWCC 3 cut(s) 389, 1019, 1203
BmgT120I GGNCC 9 cut(s) 246, 389, 434, 564, 705, 893, 1019, 1082, 1203
BmiI GGNNCC 9 cut(s) 225, 247, 391, 537, 1021, 1084, 1153, 1182, 1205
BmrFI CCNGG 8 cut(s) 372, 448, 540, 855, 1017, 1030, 1086, 1095
BmsI GCATC 2 cut(s) 13, 931
BplI GAGNNNNNCTC 2 cut(s) 423, 455
BpuMI CCSGG 4 cut(s) 448, 540, 1086, 1095
BsaBI GATNNNNATC 1 cut(s) 1106
BsaJI CCNNGG 8 cut(s) 371, 447, 607, 657, 853, 931, 1029, 1084
BsaXI ACNNNNNCTCC 4 cut(s) 638, 668, 947, 977
Bse118I RCCGGY 1 cut(s) 1118
Bse1I ACTGG 2 cut(s) 314, 556
Bse8I GATNNNNATC 1 cut(s) 1106
BseBI CCWGG 4 cut(s) 372, 855, 1017, 1030
BseDI CCNNGG 8 cut(s) 371, 447, 607, 657, 853, 931, 1029, 1084
BseJI GATNNNNATC 1 cut(s) 1106
BseMII CTCAG 3 cut(s) 119, 535, 647
BseNI ACTGG 2 cut(s) 314, 556
BseRI GAGGAG 4 cut(s) 116, 119, 183, 204
BseSI GKGCMC 2 cut(s) 632, 854
BseXI GCAGC 3 cut(s) 332, 703, 1127
BsgI GTGCAG 2 cut(s) 719, 796
Bsh1236I CGCG 1 cut(s) 302
BshNI GGYRCC 3 cut(s) 223, 535, 1151
BsiHKAI GWGCWC 1 cut(s) 456
BsiSI CCGG 7 cut(s) 338, 447, 539, 966, 1086, 1095, 1119
BslFI GGGAC 2 cut(s) 375, 388
BsmFI GGGAC 2 cut(s) 375, 388
Bsp1286I GDGCHC 4 cut(s) 456, 545, 632, 854
Bsp143I GATC 3 cut(s) 502, 507, 1180
BspCNI CTCAG 3 cut(s) 118, 534, 646
BspFNI CGCG 1 cut(s) 302
BspLI GGNNCC 9 cut(s) 225, 247, 391, 537, 1021, 1084, 1153, 1182, 1205
BspMAI CTGCAG 1 cut(s) 901
BspPI GGATC 3 cut(s) 510, 1175, 1188
BspT107I GGYRCC 3 cut(s) 223, 535, 1151
BsrBI CCGCTC 1 cut(s) 714
BsrFI RCCGGY 1 cut(s) 1118
BsrI ACTGG 2 cut(s) 314, 556
BssAI RCCGGY 1 cut(s) 1118
BssECI CCNNGG 8 cut(s) 371, 447, 607, 657, 853, 931, 1029, 1084
BssMI GATC 3 cut(s) 502, 507, 1180
BssT1I CCWWGG 3 cut(s) 607, 657, 931
Bst2UI CCWGG 4 cut(s) 372, 855, 1017, 1030
Bst4CI ACNGT 3 cut(s) 410, 589, 910
BstAPI GCANNNNNTGC 2 cut(s) 697, 1053
BstC8I GCNNGC 6 cut(s) 157, 886, 901, 1045, 1054, 1081
BstDEI CTNAG 4 cut(s) 105, 228, 521, 633
BstENI CCTNNNNNAGG 1 cut(s) 369
BstFNI CGCG 1 cut(s) 302
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 3 cut(s) 505, 510, 1183
BstMBI GATC 3 cut(s) 502, 507, 1180
BstMWI GCNNNNNNNGC 8 cut(s) 107, 697, 900, 933, 1040, 1049, 1053, 1080
BstNI CCWGG 4 cut(s) 372, 855, 1017, 1030
BstNSI RCATGY 2 cut(s) 817, 1200
BstSCI CCNGG 8 cut(s) 370, 446, 538, 853, 1015, 1028, 1084, 1093
BstSFI CTRYAG 2 cut(s) 291, 897
BstSLI GKGCMC 2 cut(s) 632, 854
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 3 cut(s) 332, 703, 1127
BstX2I RGATCY 2 cut(s) 502, 1180
BstXI CCANNNNNNTGG 1 cut(s) 1176
BstYI RGATCY 2 cut(s) 502, 1180
BtgZI GCGATG 1 cut(s) 657
BtsIMutI CAGTG 2 cut(s) 321, 563
Cac8I GCNNGC 6 cut(s) 157, 886, 901, 1045, 1054, 1081
CfoI GCGC 1 cut(s) 304
Cfr10I RCCGGY 1 cut(s) 1118
Cfr13I GGNCC 9 cut(s) 246, 389, 434, 564, 705, 893, 1019, 1082, 1203
CseI GACGC 1 cut(s) 1121
CviAII CATG 3 cut(s) 797, 814, 1197
DdeI CTNAG 4 cut(s) 105, 228, 521, 633
DpnI GATC 3 cut(s) 504, 509, 1182
DpnII GATC 3 cut(s) 502, 507, 1180
EaeI YGGCCR 4 cut(s) 348, 478, 591, 1087
EciI GGCGGA 2 cut(s) 189, 1017
Ecl136II GAGCTC 1 cut(s) 454
Eco130I CCWWGG 3 cut(s) 607, 657, 931
Eco147I AGGCCT 2 cut(s) 612, 653
Eco24I GRGCYC 2 cut(s) 456, 545
Eco47I GGWCC 3 cut(s) 389, 1019, 1203
Eco53kI GAGCTC 1 cut(s) 454
EcoICRI GAGCTC 1 cut(s) 454
EcoNI CCTNNNNNAGG 1 cut(s) 369
EcoO109I RGGNCCY 4 cut(s) 389, 434, 1019, 1082
EcoRI GAATTC 1 cut(s) 12
EcoRII CCWGG 4 cut(s) 370, 853, 1015, 1028
EcoT14I CCWWGG 3 cut(s) 607, 657, 931
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 456, 545
ErhI CCWWGG 3 cut(s) 607, 657, 931
FaeI CATG 3 cut(s) 800, 817, 1200
FalI AAGNNNNNCTT 2 cut(s) 641, 673
FaqI GGGAC 2 cut(s) 375, 388
FatI CATG 3 cut(s) 796, 813, 1196
FauI CCCGC 3 cut(s) 42, 236, 400
FbaI TGATCA 1 cut(s) 507
Fnu4HI GCNGC 5 cut(s) 300, 321, 692, 715, 1116
FriOI GRGCYC 2 cut(s) 456, 545
Fsp4HI GCNGC 5 cut(s) 300, 321, 692, 715, 1116
FspBI CTAG 1 cut(s) 366
GlaI GCGC 1 cut(s) 303
GluI GCNGC 5 cut(s) 300, 321, 692, 715, 1116
HapII CCGG 7 cut(s) 338, 447, 539, 966, 1086, 1095, 1119
HgaI GACGC 1 cut(s) 1121
HhaI GCGC 1 cut(s) 304
Hin1II CATG 3 cut(s) 800, 817, 1200
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HinfI GANTC 1 cut(s) 1158
HpaII CCGG 7 cut(s) 338, 447, 539, 966, 1086, 1095, 1119
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 1 cut(s) 1194
Hpy188I TCNGA 3 cut(s) 507, 833, 1070
Hpy188III TCNNGA 3 cut(s) 384, 442, 511
Hpy8I GTNNAC 1 cut(s) 1194
Hpy99I CGWCG 2 cut(s) 550, 1115
HpyAV CCTTC 1 cut(s) 883
HpyCH4III ACNGT 3 cut(s) 410, 589, 910
HpyCH4V TGCA 6 cut(s) 4, 95, 700, 767, 777, 899
HpyF10VI GCNNNNNNNGC 8 cut(s) 107, 697, 900, 933, 1040, 1049, 1053, 1080
HpyF3I CTNAG 4 cut(s) 105, 228, 521, 633
Hsp92II CATG 3 cut(s) 800, 817, 1200
HspAI GCGC 1 cut(s) 302
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 3 cut(s) 502, 507, 1180
LmnI GCTCC 3 cut(s) 451, 800, 1076
Lsp1109I GCAGC 3 cut(s) 332, 703, 1127
LweI GCATC 2 cut(s) 13, 931
MaeI CTAG 1 cut(s) 366
MaeIII GTNAC 2 cut(s) 578, 982
MalI GATC 3 cut(s) 504, 509, 1182
MbiI CCGCTC 1 cut(s) 714
MboI GATC 3 cut(s) 502, 507, 1180
MboII GAAGA 1 cut(s) 733
MflI RGATCY 2 cut(s) 502, 1180
MhlI GDGCHC 4 cut(s) 456, 545, 632, 854
MlsI TGGCCA 2 cut(s) 350, 593
MluCI AATT 2 cut(s) 12, 1173
MluNI TGGCCA 2 cut(s) 350, 593
MmeI TCCRAC 2 cut(s) 811, 1120
Mox20I TGGCCA 2 cut(s) 350, 593
Mph1103I ATGCAT 1 cut(s) 6
MscI TGGCCA 2 cut(s) 350, 593
MslI CAYNNNNRTG 2 cut(s) 359, 753
Msp20I TGGCCA 2 cut(s) 350, 593
MspI CCGG 7 cut(s) 338, 447, 539, 966, 1086, 1095, 1119
MspR9I CCNGG 8 cut(s) 372, 448, 540, 855, 1017, 1030, 1086, 1095
MvaI CCWGG 4 cut(s) 372, 855, 1017, 1030
MvnI CGCG 1 cut(s) 302
MwoI GCNNNNNNNGC 8 cut(s) 107, 697, 900, 933, 1040, 1049, 1053, 1080
NciI CCSGG 4 cut(s) 448, 540, 1086, 1095
NdeII GATC 3 cut(s) 502, 507, 1180
NlaIII CATG 3 cut(s) 800, 817, 1200
NlaIV GGNNCC 9 cut(s) 225, 247, 391, 537, 1021, 1084, 1153, 1182, 1205
NmuCI GTSAC 1 cut(s) 982
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 817, 1200
PceI AGGCCT 2 cut(s) 612, 653
PcsI WCGNNNNNNNCGW 1 cut(s) 837
PfeI GAWTC 1 cut(s) 1158
PflFI GACNNNGTC 1 cut(s) 908
PflMI CCANNNNNTGG 3 cut(s) 589, 1029, 1200
PkrI GCNGC 5 cut(s) 301, 322, 693, 716, 1117
PpuMI RGGWCCY 2 cut(s) 389, 1019
Psp124BI GAGCTC 1 cut(s) 456
Psp5II RGGWCCY 2 cut(s) 389, 1019
Psp6I CCWGG 4 cut(s) 370, 853, 1015, 1028
PspGI CCWGG 4 cut(s) 370, 853, 1015, 1028
PspN4I GGNNCC 9 cut(s) 225, 247, 391, 537, 1021, 1084, 1153, 1182, 1205
PspPI GGNCC 9 cut(s) 246, 389, 434, 564, 705, 893, 1019, 1082, 1203
PspPPI RGGWCCY 2 cut(s) 389, 1019
PstI CTGCAG 1 cut(s) 901
PsuI RGATCY 2 cut(s) 502, 1180
PsyI GACNNNGTC 1 cut(s) 908
RseI CAYNNNNRTG 2 cut(s) 359, 753
SacI GAGCTC 1 cut(s) 456
SatI GCNGC 5 cut(s) 300, 321, 692, 715, 1116
Sau3AI GATC 3 cut(s) 502, 507, 1180
Sau96I GGNCC 9 cut(s) 246, 389, 434, 564, 705, 893, 1019, 1082, 1203
SbfI CCTGCAGG 1 cut(s) 901
ScrFI CCNGG 8 cut(s) 372, 448, 540, 855, 1017, 1030, 1086, 1095
SdaI CCTGCAGG 1 cut(s) 901
SduI GDGCHC 4 cut(s) 456, 545, 632, 854
SfaNI GCATC 2 cut(s) 13, 931
SfcI CTRYAG 2 cut(s) 291, 897
SinI GGWCC 3 cut(s) 389, 1019, 1203
SmiMI CAYNNNNRTG 2 cut(s) 359, 753
Sse8387I CCTGCAGG 1 cut(s) 901
Sse9I AATT 2 cut(s) 12, 1173
SseBI AGGCCT 2 cut(s) 612, 653
SspMI CTAG 1 cut(s) 366
SstI GAGCTC 1 cut(s) 456
StuI AGGCCT 2 cut(s) 612, 653
StyD4I CCNGG 8 cut(s) 370, 446, 538, 853, 1015, 1028, 1084, 1093
StyI CCWWGG 3 cut(s) 607, 657, 931
TaaI ACNGT 3 cut(s) 410, 589, 910
TaqI TCGA 6 cut(s) 16, 263, 383, 545, 638, 1110
TasI AATT 2 cut(s) 12, 1173
TauI GCSGC 2 cut(s) 302, 717
TfiI GAWTC 1 cut(s) 1158
TscAI CASTG 2 cut(s) 321, 563
TseFI GTSAC 1 cut(s) 982
TseI GCWGC 3 cut(s) 320, 691, 1115
Tsp45I GTSAC 1 cut(s) 982
TspGWI ACGGA 1 cut(s) 967
TspRI CASTG 2 cut(s) 321, 563
Tth111I GACNNNGTC 1 cut(s) 908
Van91I CCANNNNNTGG 3 cut(s) 589, 1029, 1200
VpaK11BI GGWCC 3 cut(s) 389, 1019, 1203
XagI CCTNNNNNAGG 1 cut(s) 369
XapI RAATTY 1 cut(s) 12
XceI RCATGY 2 cut(s) 817, 1200
XcmI CCANNNNNNNNNTGG 1 cut(s) 313
XspI CTAG 1 cut(s) 366
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.