Rroxscaffold_4G00276730

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005922
Physical Location & Seq
Reverse (-)
235164 .. 236303
1140 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00276730.1

Sequence Viewer

Length: 1140 bp
ATGGTTGTTCGTGTTGCAGTAGCAACTCAGGCTCTCTTGCTAATCCTCCTCCTCACTACGCCTCACTTCGTATTGGCAGGCAAGAAAGGAGGAGGCAGTGGCAAGAAAGGAGGAGGCGGTAAGGGTAGGGCTAAAAAACCATCGGCACCTTATAGAGCACCTAAGAATGGTGGAGGCGGGGCCAAGAATAAACCAGCAACACCTTATAGACCACCTGTAGTAGCCGCGCCCAAAAAACCAGTGGCAGCTTATACACCTCTGCCGGAAGCTGTGGCCACCATTGAAGTGCCTAGACCAGGGACACTATCGAGAGGTCCCGCCTGTAAGGGCAACGGTGAGGGTATCATATACAAGGGAGGCCCTCTCCTGACCGGGGAGCTCAACCTTTCCATCATATTTTACGGCCAATGGCAGAGCCAACACAAGGATCTTATCAGGAGTTTCCTCAGTTCGTTGGCGGTGCCGGGCTCGACGGCGAACCAGTGGTGGGCCATTGTGGAAAGTTACCAGACTGTGGCCAATATGCCCAACCAAGGCGTCCATATCAAAGTGGGCACTCAGTCGAGCGATGACAAGGCCTCCTTGGGCAAAGTTTTGACCAAAGACTTTATCAAGCAGCTTGTGCAGAGGGCCAAGAGCGGCAACCCCAACACCCTCGCTGTCATCTTCGCCCACAAAGATGTCGCAGTCGCAGACCTGTGCAGGGGCAAATGCTACGAGCATGGAGCGTTTGATAACATGCCCTATCTCATTGTCGGAAACCCCGAAGTTGAGTGCCCTGGTTCTTGTGCCATTCCCTTCGCAAAGGCCAGCTACGGTCCTGCAGGCGACACCGTCAAACCACCAAACGGCGACCTTGGCGTTGATGCTACCATCATCAACTTTGCCTCCGGCTTGGCTTCAGTAGTCACTAACCCATTCAACGGCGGATTTTCCAAACCAGGACCCAAAACCTGGGCGATTGAGGCTGGCAACGCGTGCGAGGATATGTTCGGAAGCGGAGCAGGCCCCGGCCAACCCGGAAAGATGACAATCGACGCAGCCGGTTGTGGCTACAATGCCGTTGGAGATGGGGGTGCCAGATTCTTGCTTCCAGCAATTTGGGATCCAAAGTCGTCCACATGCTGGACCCCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

379

Amino Acids

39.22

Weight (kDa)

9.42

Isoelectric Point (pI)

29.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 117 - 378 9.8e-83 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 145, 460, 1076
AccB7I CCANNNNNTGG 3 cut(s) 514, 954, 1125
AccBSI CCGCTC 1 cut(s) 639
AccII CGCG 2 cut(s) 227, 977
AciI CCGC 8 cut(s) 117, 177, 225, 318, 458, 639, 927, 999
AclWI GGATC 3 cut(s) 435, 1100, 1113
AcoI YGGCCR 4 cut(s) 273, 403, 516, 1012
AcuI CTGAAG 1 cut(s) 885
AcyI GRCGYC 1 cut(s) 537
AflIII ACRYGT 1 cut(s) 975
AgsI TTSAA 2 cut(s) 284, 922
AjnI CCWGG 4 cut(s) 295, 778, 940, 953
AluBI AGCT 5 cut(s) 248, 269, 379, 619, 813
AluI AGCT 5 cut(s) 248, 269, 379, 619, 813
Alw21I GWGCWC 2 cut(s) 160, 381
AlwI GGATC 3 cut(s) 435, 1100, 1113
ApeKI GCWGC 3 cut(s) 245, 616, 1040
AspLEI GCGC 1 cut(s) 229
AspS9I GGNCC 9 cut(s) 180, 314, 359, 489, 630, 818, 944, 1007, 1128
AsuC2I CCSGG 4 cut(s) 373, 465, 1011, 1020
AsuHPI GGTGA 1 cut(s) 347
AvaII GGWCC 4 cut(s) 314, 818, 944, 1128
BaeGI GKGCMC 2 cut(s) 557, 779
BalI TGGCCA 2 cut(s) 275, 518
BamHI GGATCC 1 cut(s) 1105
BanI GGYRCC 3 cut(s) 145, 460, 1076
BanII GRGCYC 2 cut(s) 381, 470
Bbv12I GWGCWC 2 cut(s) 160, 381
BbvI GCAGC 3 cut(s) 257, 628, 1052
BccI CCATC 4 cut(s) 148, 398, 881, 1064
BceAI ACGGC 5 cut(s) 418, 489, 865, 940, 1046
BciT130I CCWGG 4 cut(s) 297, 780, 942, 955
BcnI CCSGG 4 cut(s) 373, 465, 1011, 1020
BfaI CTAG 1 cut(s) 291
BfmI CTRYAG 2 cut(s) 216, 822
BisI GCNGC 5 cut(s) 225, 246, 617, 640, 1041
BlsI GCNGC 5 cut(s) 226, 247, 618, 641, 1042
Bme1390I CCNGG 8 cut(s) 297, 373, 465, 780, 942, 955, 1011, 1020
Bme18I GGWCC 4 cut(s) 314, 818, 944, 1128
BmgT120I GGNCC 9 cut(s) 180, 314, 359, 489, 630, 818, 944, 1007, 1128
BmiI GGNNCC 9 cut(s) 147, 181, 316, 462, 946, 1009, 1078, 1107, 1130
BmrFI CCNGG 8 cut(s) 297, 373, 465, 780, 942, 955, 1011, 1020
BmsI GCATC 1 cut(s) 856
BplI GAGNNNNNCTC 2 cut(s) 348, 380
BpuMI CCSGG 4 cut(s) 373, 465, 1011, 1020
BsaBI GATNNNNATC 1 cut(s) 1031
BsaHI GRCGYC 1 cut(s) 537
BsaJI CCNNGG 8 cut(s) 296, 372, 532, 582, 778, 856, 954, 1009
BsaXI ACNNNNNCTCC 4 cut(s) 563, 593, 872, 902
Bse118I RCCGGY 1 cut(s) 1043
Bse1I ACTGG 2 cut(s) 239, 481
Bse8I GATNNNNATC 1 cut(s) 1031
BseBI CCWGG 4 cut(s) 297, 780, 942, 955
BseDI CCNNGG 8 cut(s) 296, 372, 532, 582, 778, 856, 954, 1009
BseJI GATNNNNATC 1 cut(s) 1031
BseMII CTCAG 3 cut(s) 41, 460, 572
BseNI ACTGG 2 cut(s) 239, 481
BseRI GAGGAG 4 cut(s) 38, 41, 105, 126
BseSI GKGCMC 2 cut(s) 557, 779
BseXI GCAGC 3 cut(s) 257, 628, 1052
BsgI GTGCAG 2 cut(s) 644, 721
Bsh1236I CGCG 2 cut(s) 227, 977
BshNI GGYRCC 3 cut(s) 145, 460, 1076
BsiHKAI GWGCWC 2 cut(s) 160, 381
BsiSI CCGG 7 cut(s) 263, 372, 464, 891, 1011, 1020, 1044
BslFI GGGAC 2 cut(s) 300, 313
BsmFI GGGAC 2 cut(s) 300, 313
Bsp1286I GDGCHC 5 cut(s) 160, 381, 470, 557, 779
Bsp143I GATC 2 cut(s) 427, 1105
BspACI CCGC 8 cut(s) 117, 177, 225, 318, 458, 639, 927, 999
BspCNI CTCAG 3 cut(s) 40, 459, 571
BspFNI CGCG 2 cut(s) 227, 977
BspLI GGNNCC 9 cut(s) 147, 181, 316, 462, 946, 1009, 1078, 1107, 1130
BspMAI CTGCAG 1 cut(s) 826
BspPI GGATC 3 cut(s) 435, 1100, 1113
BspT107I GGYRCC 3 cut(s) 145, 460, 1076
BsrBI CCGCTC 1 cut(s) 639
BsrFI RCCGGY 1 cut(s) 1043
BsrI ACTGG 2 cut(s) 239, 481
BssAI RCCGGY 1 cut(s) 1043
BssECI CCNNGG 8 cut(s) 296, 372, 532, 582, 778, 856, 954, 1009
BssMI GATC 2 cut(s) 427, 1105
BssNI GRCGYC 1 cut(s) 537
BssT1I CCWWGG 3 cut(s) 532, 582, 856
Bst2UI CCWGG 4 cut(s) 297, 780, 942, 955
Bst4CI ACNGT 4 cut(s) 335, 514, 818, 835
BstACI GRCGYC 1 cut(s) 537
BstAPI GCANNNNNTGC 2 cut(s) 622, 978
BstC8I GCNNGC 6 cut(s) 79, 811, 826, 970, 979, 1006
BstDEI CTNAG 4 cut(s) 27, 162, 446, 558
BstENI CCTNNNNNAGG 1 cut(s) 294
BstFNI CGCG 2 cut(s) 227, 977
BstHHI GCGC 1 cut(s) 229
BstKTI GATC 2 cut(s) 430, 1108
BstMBI GATC 2 cut(s) 427, 1105
BstMWI GCNNNNNNNGC 7 cut(s) 29, 622, 858, 965, 974, 978, 1005
BstNI CCWGG 4 cut(s) 297, 780, 942, 955
BstNSI RCATGY 2 cut(s) 742, 1125
BstSCI CCNGG 8 cut(s) 295, 371, 463, 778, 940, 953, 1009, 1018
BstSFI CTRYAG 2 cut(s) 216, 822
BstSLI GKGCMC 2 cut(s) 557, 779
BstUI CGCG 2 cut(s) 227, 977
BstV1I GCAGC 3 cut(s) 257, 628, 1052
BstX2I RGATCY 2 cut(s) 427, 1105
BstXI CCANNNNNNTGG 1 cut(s) 1101
BstYI RGATCY 2 cut(s) 427, 1105
BtgZI GCGATG 1 cut(s) 582
BtsI GCAGTG 1 cut(s) 103
BtsIMutI CAGTG 3 cut(s) 103, 246, 488
Cac8I GCNNGC 6 cut(s) 79, 811, 826, 970, 979, 1006
CfoI GCGC 1 cut(s) 229
Cfr10I RCCGGY 1 cut(s) 1043
Cfr13I GGNCC 9 cut(s) 180, 314, 359, 489, 630, 818, 944, 1007, 1128
CseI GACGC 2 cut(s) 526, 1046
CviAII CATG 3 cut(s) 722, 739, 1122
DdeI CTNAG 4 cut(s) 27, 162, 446, 558
DpnI GATC 2 cut(s) 429, 1107
DpnII GATC 2 cut(s) 427, 1105
EaeI YGGCCR 4 cut(s) 273, 403, 516, 1012
EciI GGCGGA 1 cut(s) 942
Ecl136II GAGCTC 1 cut(s) 379
Eco130I CCWWGG 3 cut(s) 532, 582, 856
Eco147I AGGCCT 1 cut(s) 578
Eco24I GRGCYC 2 cut(s) 381, 470
Eco47I GGWCC 4 cut(s) 314, 818, 944, 1128
Eco53kI GAGCTC 1 cut(s) 379
Eco57I CTGAAG 1 cut(s) 885
EcoICRI GAGCTC 1 cut(s) 379
EcoNI CCTNNNNNAGG 1 cut(s) 294
EcoO109I RGGNCCY 4 cut(s) 314, 359, 944, 1007
EcoRII CCWGG 4 cut(s) 295, 778, 940, 953
EcoT14I CCWWGG 3 cut(s) 532, 582, 856
EcoT38I GRGCYC 2 cut(s) 381, 470
ErhI CCWWGG 3 cut(s) 532, 582, 856
FaeI CATG 3 cut(s) 725, 742, 1125
FalI AAGNNNNNCTT 2 cut(s) 566, 598
FaqI GGGAC 2 cut(s) 300, 313
FatI CATG 3 cut(s) 721, 738, 1121
FauI CCCGC 2 cut(s) 170, 325
Fnu4HI GCNGC 5 cut(s) 225, 246, 617, 640, 1041
FriOI GRGCYC 2 cut(s) 381, 470
Fsp4HI GCNGC 5 cut(s) 225, 246, 617, 640, 1041
FspBI CTAG 1 cut(s) 291
GlaI GCGC 1 cut(s) 228
GluI GCNGC 5 cut(s) 225, 246, 617, 640, 1041
HapII CCGG 7 cut(s) 263, 372, 464, 891, 1011, 1020, 1044
HgaI GACGC 2 cut(s) 526, 1046
HhaI GCGC 1 cut(s) 229
Hin1I GRCGYC 1 cut(s) 537
Hin1II CATG 3 cut(s) 725, 742, 1125
Hin6I GCGC 1 cut(s) 227
HinP1I GCGC 1 cut(s) 227
HinfI GANTC 1 cut(s) 1083
HpaII CCGG 7 cut(s) 263, 372, 464, 891, 1011, 1020, 1044
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 1 cut(s) 1119
Hpy188I TCNGA 2 cut(s) 758, 995
Hpy188III TCNNGA 3 cut(s) 309, 367, 436
Hpy8I GTNNAC 1 cut(s) 1119
Hpy99I CGWCG 2 cut(s) 475, 1040
HpyAV CCTTC 1 cut(s) 808
HpyCH4III ACNGT 4 cut(s) 335, 514, 818, 835
HpyCH4V TGCA 4 cut(s) 17, 625, 702, 824
HpyF10VI GCNNNNNNNGC 7 cut(s) 29, 622, 858, 965, 974, 978, 1005
HpyF3I CTNAG 4 cut(s) 27, 162, 446, 558
Hsp92I GRCGYC 1 cut(s) 537
Hsp92II CATG 3 cut(s) 725, 742, 1125
HspAI GCGC 1 cut(s) 227
Kzo9I GATC 2 cut(s) 427, 1105
LmnI GCTCC 3 cut(s) 376, 725, 1001
Lsp1109I GCAGC 3 cut(s) 257, 628, 1052
LweI GCATC 1 cut(s) 856
MaeI CTAG 1 cut(s) 291
MaeIII GTNAC 2 cut(s) 503, 907
MalI GATC 2 cut(s) 429, 1107
MbiI CCGCTC 1 cut(s) 639
MboI GATC 2 cut(s) 427, 1105
MboII GAAGA 1 cut(s) 658
MflI RGATCY 2 cut(s) 427, 1105
MhlI GDGCHC 5 cut(s) 160, 381, 470, 557, 779
MlsI TGGCCA 2 cut(s) 275, 518
MluCI AATT 1 cut(s) 1098
MluI ACGCGT 1 cut(s) 975
MluNI TGGCCA 2 cut(s) 275, 518
MmeI TCCRAC 2 cut(s) 736, 1045
Mox20I TGGCCA 2 cut(s) 275, 518
MscI TGGCCA 2 cut(s) 275, 518
MslI CAYNNNNRTG 2 cut(s) 284, 678
Msp20I TGGCCA 2 cut(s) 275, 518
MspI CCGG 7 cut(s) 263, 372, 464, 891, 1011, 1020, 1044
MspR9I CCNGG 8 cut(s) 297, 373, 465, 780, 942, 955, 1011, 1020
MvaI CCWGG 4 cut(s) 297, 780, 942, 955
MvnI CGCG 2 cut(s) 227, 977
MwoI GCNNNNNNNGC 7 cut(s) 29, 622, 858, 965, 974, 978, 1005
NciI CCSGG 4 cut(s) 373, 465, 1011, 1020
NdeII GATC 2 cut(s) 427, 1105
NlaIII CATG 3 cut(s) 725, 742, 1125
NlaIV GGNNCC 9 cut(s) 147, 181, 316, 462, 946, 1009, 1078, 1107, 1130
NmuCI GTSAC 1 cut(s) 907
NspI RCATGY 2 cut(s) 742, 1125
PceI AGGCCT 1 cut(s) 578
PcsI WCGNNNNNNNCGW 1 cut(s) 762
PfeI GAWTC 1 cut(s) 1083
PflFI GACNNNGTC 1 cut(s) 833
PflMI CCANNNNNTGG 3 cut(s) 514, 954, 1125
PkrI GCNGC 5 cut(s) 226, 247, 618, 641, 1042
PpuMI RGGWCCY 2 cut(s) 314, 944
Psp124BI GAGCTC 1 cut(s) 381
Psp5II RGGWCCY 2 cut(s) 314, 944
Psp6I CCWGG 4 cut(s) 295, 778, 940, 953
PspGI CCWGG 4 cut(s) 295, 778, 940, 953
PspN4I GGNNCC 9 cut(s) 147, 181, 316, 462, 946, 1009, 1078, 1107, 1130
PspPI GGNCC 9 cut(s) 180, 314, 359, 489, 630, 818, 944, 1007, 1128
PspPPI RGGWCCY 2 cut(s) 314, 944
PstI CTGCAG 1 cut(s) 826
PsuI RGATCY 2 cut(s) 427, 1105
PsyI GACNNNGTC 1 cut(s) 833
RseI CAYNNNNRTG 2 cut(s) 284, 678
SacI GAGCTC 1 cut(s) 381
SatI GCNGC 5 cut(s) 225, 246, 617, 640, 1041
Sau3AI GATC 2 cut(s) 427, 1105
Sau96I GGNCC 9 cut(s) 180, 314, 359, 489, 630, 818, 944, 1007, 1128
SbfI CCTGCAGG 1 cut(s) 826
ScrFI CCNGG 8 cut(s) 297, 373, 465, 780, 942, 955, 1011, 1020
SdaI CCTGCAGG 1 cut(s) 826
SduI GDGCHC 5 cut(s) 160, 381, 470, 557, 779
SfaNI GCATC 1 cut(s) 856
SfcI CTRYAG 2 cut(s) 216, 822
SinI GGWCC 4 cut(s) 314, 818, 944, 1128
SmiMI CAYNNNNRTG 2 cut(s) 284, 678
Sse8387I CCTGCAGG 1 cut(s) 826
Sse9I AATT 1 cut(s) 1098
SseBI AGGCCT 1 cut(s) 578
SsiI CCGC 8 cut(s) 117, 177, 225, 318, 458, 639, 927, 999
SspMI CTAG 1 cut(s) 291
SstI GAGCTC 1 cut(s) 381
StuI AGGCCT 1 cut(s) 578
StyD4I CCNGG 8 cut(s) 295, 371, 463, 778, 940, 953, 1009, 1018
StyI CCWWGG 3 cut(s) 532, 582, 856
TaaI ACNGT 4 cut(s) 335, 514, 818, 835
TaqI TCGA 4 cut(s) 308, 470, 563, 1035
TasI AATT 1 cut(s) 1098
TauI GCSGC 2 cut(s) 227, 642
TfiI GAWTC 1 cut(s) 1083
TscAI CASTG 3 cut(s) 103, 246, 488
TseFI GTSAC 1 cut(s) 907
TseI GCWGC 3 cut(s) 245, 616, 1040
Tsp45I GTSAC 1 cut(s) 907
TspRI CASTG 3 cut(s) 103, 246, 488
Tth111I GACNNNGTC 1 cut(s) 833
Van91I CCANNNNNTGG 3 cut(s) 514, 954, 1125
VpaK11BI GGWCC 4 cut(s) 314, 818, 944, 1128
XagI CCTNNNNNAGG 1 cut(s) 294
XceI RCATGY 2 cut(s) 742, 1125
XcmI CCANNNNNNNNNTGG 1 cut(s) 238
XspI CTAG 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.