Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016737.1

Orthogroup ID

OG0005922

Physical Location & Seq

Genomic Coordinates Forward (+)

28231 .. 29163

Gene Structure 933 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016737.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

atggccttatcaagatcaagagttcatcctgatcagcttgctctggttctcagtttactcttgttaattactactccatccctggtttcggggcacgttaaacccccaggcaccatctgttacaatggagggctactcctgaccggcaaactcgacctttcaatcttcttctatggtgcaattgggcgcacacaaaagcttgtcgtcaggaatttcatcaagtccctgaatcatggtggtggcaccctgaagcctcgggtaacatcctggtgggacattgtcgagagctaccaatccgtatcttcccccgctcataatgcgcccaaaatcgcagttaaagtggtgagtcaaataaccgagaaaggttactccctggggaaggtgatcaccattgacttcataaggtcgatgatcaaaaaagccaccgccgggaagcctcctgcctctcttgtcgtcatattcaccgataaggaaagtgcggtcgcatccctttgcaggggaaaatgctatgatcacggagtcatagataaccagccctatctcatcgtcggaaaccccgaagtcgagtgccccgatgcttgtggctggcccttcatgaagtccagctacaatccaggcatcaccctcacaccgccaaacggcaaccccgccgtcgatgctattctagtcaactttgctgccggtttggctgctgccgtcaccaatccattcaacaccggattttccaaaccaggacccaaaacctggccgctggaggccagcactgtttgtaacggtatattcgcaagcgggtcgttcccggggaatcccggcaaggtggaggtggacgcgagaacaggtgctgctttcaatgctcatggattgaagggtatgaagtttttgcttcctgcgctgtggaatccacaaacatcatcatgctggaccccgatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

310

Amino Acids

32.96

Weight (kDa)

9.37

Isoelectric Point (pI)

22.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005922)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g52250 FvH4_7g34090 FvH4_7g34100
malus_domestica	MD01G1237200.v1.1 MD07G1309800.v1.1
prunus_persica	Prupe.2G327500_v2.0.a1
pyrus_communis	pycom03g08340 pycom07g28180
rosa_chinensis	RchiOBHm_Chr1g0384371 RchiOBHm_Chr1g0384381
rosa_laevigata	RLG00000026043 RLG00000026044
rosa_multiflora	Rmu_co8495263.1_g000001 Rmu_sc0016737.1_g000008
rosa_roxburghii	Rroxscaffold_4G00276720 Rroxscaffold_4G00276730
rosa_rugosa	Rorug01G0447300 Rorug01G0447300
rosa_samantha	Rh1AG472500 Rh1AG472600 Rh1BG430300 Rh1BG430400 Rh1CG443300 Rh1CG443400 Rh1DG462900 Rh1DG463000
rosa_wichuraiana	Rw1G039990 Rw1G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	110, 242
AccB7I	CCANNNNNTGG	1 cut(s)	744
AccBSI	CCGCTC	1 cut(s)	311
AccII	CGCG	1 cut(s)	830
AciI	CCGC	7 cut(s)	309, 426, 479, 632, 648, 749, 789
AcoI	YGGCCR	1 cut(s)	746
AcsI	RAATTY	1 cut(s)	211
AcuI	CTGAAG	1 cut(s)	269
AfiI	CCNNNNNNNGG	7 cut(s)	88, 379, 429, 495, 496, 638, 744
AgsI	TTSAA	4 cut(s)	162, 712, 850, 865
AjnI	CCWGG	7 cut(s)	81, 106, 266, 372, 613, 730, 743
AluBI	AGCT	4 cut(s)	37, 199, 288, 606
AluI	AGCT	4 cut(s)	37, 199, 288, 606
AlwNI	CAGNNNCTG	1 cut(s)	842
Ama87I	CYCGRG	2 cut(s)	255, 799
AoxI	GGCC	4 cut(s)	3, 587, 746, 756
ApeKI	GCWGC	4 cut(s)	677, 689, 692, 842
ApoI	RAATTY	1 cut(s)	211
AspLEI	GCGC	3 cut(s)	189, 322, 892
AspS9I	GGNCC	3 cut(s)	588, 734, 921
AsuC2I	CCSGG	4 cut(s)	430, 800, 801, 810
AsuHPI	GGTGA	6 cut(s)	355, 379, 394, 454, 613, 691
AvaI	CYCGRG	2 cut(s)	255, 799
AvaII	GGWCC	2 cut(s)	734, 921
BaeGI	GKGCMC	2 cut(s)	96, 572
BanI	GGYRCC	2 cut(s)	110, 242
BarI	GAAGNNNNNNTAC	2 cut(s)	590, 622
BbvI	GCAGC	4 cut(s)	664, 676, 679, 829
BccI	CCATC	2 cut(s)	85, 122
BceAI	ACGGC	3 cut(s)	635, 655, 680
BcgI	CGANNNNNNTGC	2 cut(s)	774, 808
BciT130I	CCWGG	7 cut(s)	83, 108, 268, 374, 615, 732, 745
BclI	TGATCA	4 cut(s)	31, 384, 411, 511
BcnI	CCSGG	4 cut(s)	430, 800, 801, 810
BfaI	CTAG	1 cut(s)	665
BglI	GCCNNNNNGGC	1 cut(s)	686
BisI	GCNGC	5 cut(s)	678, 690, 693, 749, 843
BlsI	GCNGC	5 cut(s)	679, 691, 694, 750, 844
Bme18I	GGWCC	2 cut(s)	734, 921
BmeT110I	CYCGRG	2 cut(s)	255, 799
BmgT120I	GGNCC	3 cut(s)	588, 734, 921
BmiI	GGNNCC	4 cut(s)	112, 244, 736, 923
BmsI	GCATC	4 cut(s)	494, 565, 627, 646
BplI	GAGNNNNNCTC	2 cut(s)	120, 152
BpmI	CTGGAG	1 cut(s)	773
BpuMI	CCSGG	4 cut(s)	430, 800, 801, 810
BsaJI	CCNNGG	7 cut(s)	81, 106, 254, 372, 373, 799, 800
BsaWI	WCCGGW	1 cut(s)	716
Bsc4I	CCNNNNNNNGG	7 cut(s)	88, 379, 429, 495, 496, 638, 744
Bse118I	RCCGGY	2 cut(s)	143, 680
BseBI	CCWGG	7 cut(s)	83, 108, 268, 374, 615, 732, 745
BseDI	CCNNGG	7 cut(s)	81, 106, 254, 372, 373, 799, 800
BseGI	GGATG	4 cut(s)	25, 77, 263, 485
BseLI	CCNNNNNNNGG	7 cut(s)	88, 379, 429, 495, 496, 638, 744
BseMII	CTCAG	1 cut(s)	64
BseSI	GKGCMC	2 cut(s)	96, 572
BseXI	GCAGC	4 cut(s)	664, 676, 679, 829
Bsh1236I	CGCG	1 cut(s)	830
Bsh1285I	CGRYCG	1 cut(s)	483
BshFI	GGCC	4 cut(s)	5, 589, 748, 758
BshNI	GGYRCC	2 cut(s)	110, 242
BsiEI	CGRYCG	1 cut(s)	483
BsiHKCI	CYCGRG	2 cut(s)	255, 799
BsiSI	CCGG	6 cut(s)	144, 429, 681, 717, 800, 810
BslFI	GGGAC	2 cut(s)	208, 287
BslI	CCNNNNNNNGG	7 cut(s)	88, 379, 429, 495, 496, 638, 744
BsmFI	GGGAC	2 cut(s)	208, 287
BsnI	GGCC	4 cut(s)	5, 589, 748, 758
BsoBI	CYCGRG	2 cut(s)	255, 799
Bsp1286I	GDGCHC	2 cut(s)	96, 572
Bsp143I	GATC	5 cut(s)	14, 31, 384, 411, 511
BspACI	CCGC	7 cut(s)	309, 426, 479, 632, 648, 749, 789
BspANI	GGCC	4 cut(s)	5, 589, 748, 758
BspCNI	CTCAG	1 cut(s)	63
BspFNI	CGCG	1 cut(s)	830
BspHI	TCATGA	1 cut(s)	594
BspLI	GGNNCC	4 cut(s)	112, 244, 736, 923
BspT107I	GGYRCC	2 cut(s)	110, 242
BsrBI	CCGCTC	1 cut(s)	311
BsrFI	RCCGGY	2 cut(s)	143, 680
BssAI	RCCGGY	2 cut(s)	143, 680
BssECI	CCNNGG	7 cut(s)	81, 106, 254, 372, 373, 799, 800
BssMI	GATC	5 cut(s)	14, 31, 384, 411, 511
Bst2UI	CCWGG	7 cut(s)	83, 108, 268, 374, 615, 732, 745
Bst4CI	ACNGT	2 cut(s)	766, 776
BstC8I	GCNNGC	4 cut(s)	39, 587, 760, 787
BstDEI	CTNAG	1 cut(s)	50
BstENI	CCTNNNNNAGG	1 cut(s)	377
BstF5I	GGATG	4 cut(s)	25, 77, 263, 485
BstFNI	CGCG	1 cut(s)	830
BstHHI	GCGC	3 cut(s)	189, 322, 892
BstKTI	GATC	5 cut(s)	17, 34, 387, 414, 514
BstMBI	GATC	5 cut(s)	14, 31, 384, 411, 511
BstMCI	CGRYCG	1 cut(s)	483
BstMWI	GCNNNNNNNGC	5 cut(s)	317, 656, 686, 851, 889
BstNI	CCWGG	7 cut(s)	83, 108, 268, 374, 615, 732, 745
BstSLI	GKGCMC	2 cut(s)	96, 572
BstUI	CGCG	1 cut(s)	830
BstV1I	GCAGC	4 cut(s)	664, 676, 679, 829
BsuRI	GGCC	4 cut(s)	5, 589, 748, 758
BtsCI	GGATG	4 cut(s)	25, 77, 263, 485
BtsIMutI	CAGTG	1 cut(s)	762
Cac8I	GCNNGC	4 cut(s)	39, 587, 760, 787
CaiI	CAGNNNCTG	1 cut(s)	842
CciI	TCATGA	1 cut(s)	594
CfoI	GCGC	3 cut(s)	189, 322, 892
Cfr10I	RCCGGY	2 cut(s)	143, 680
Cfr13I	GGNCC	3 cut(s)	588, 734, 921
Cfr9I	CCCGGG	1 cut(s)	799
CseI	GACGC	1 cut(s)	836
CviAII	CATG	4 cut(s)	233, 595, 857, 915
DdeI	CTNAG	1 cut(s)	50
DpnI	GATC	5 cut(s)	16, 33, 386, 413, 513
DpnII	GATC	5 cut(s)	14, 31, 384, 411, 511
EaeI	YGGCCR	1 cut(s)	746
Eco47I	GGWCC	2 cut(s)	734, 921
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	2 cut(s)	255, 799
EcoNI	CCTNNNNNAGG	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	734
EcoRII	CCWGG	7 cut(s)	81, 106, 266, 372, 613, 730, 743
FaeI	CATG	4 cut(s)	236, 598, 860, 918
FaqI	GGGAC	2 cut(s)	208, 287
FatI	CATG	4 cut(s)	232, 594, 856, 914
FauI	CCCGC	3 cut(s)	316, 655, 782
FbaI	TGATCA	4 cut(s)	31, 384, 411, 511
Fnu4HI	GCNGC	5 cut(s)	678, 690, 693, 749, 843
FokI	GGATG	4 cut(s)	12, 64, 250, 472
Fsp4HI	GCNGC	5 cut(s)	678, 690, 693, 749, 843
FspBI	CTAG	1 cut(s)	665
GlaI	GCGC	3 cut(s)	188, 321, 891
GluI	GCNGC	5 cut(s)	678, 690, 693, 749, 843
GsuI	CTGGAG	1 cut(s)	773
HaeIII	GGCC	4 cut(s)	5, 589, 748, 758
HapII	CCGG	6 cut(s)	144, 429, 681, 717, 800, 810
HgaI	GACGC	1 cut(s)	836
HhaI	GCGC	3 cut(s)	189, 322, 892
Hin1II	CATG	4 cut(s)	236, 598, 860, 918
Hin6I	GCGC	3 cut(s)	187, 320, 890
HinP1I	GCGC	3 cut(s)	187, 320, 890
HincII	GTYRAC	1 cut(s)	670
HindII	GTYRAC	1 cut(s)	670
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	5 cut(s)	229, 346, 519, 805, 898
HpaII	CCGG	6 cut(s)	144, 429, 681, 717, 800, 810
HphI	GGTGA	6 cut(s)	355, 379, 394, 454, 613, 691
Hpy166II	GTNNAC	3 cut(s)	56, 670, 826
Hpy188I	TCNGA	1 cut(s)	551
Hpy188III	TCNNGA	7 cut(s)	12, 18, 29, 139, 208, 283, 595
Hpy8I	GTNNAC	3 cut(s)	56, 670, 826
Hpy99I	CGWCG	2 cut(s)	551, 656
HpyAV	CCTTC	3 cut(s)	373, 601, 859
HpyCH4III	ACNGT	2 cut(s)	766, 776
HpyCH4IV	ACGT	1 cut(s)	96
HpyCH4V	TGCA	2 cut(s)	179, 495
HpyF10VI	GCNNNNNNNGC	5 cut(s)	317, 656, 686, 851, 889
HpyF3I	CTNAG	1 cut(s)	50
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	4 cut(s)	236, 598, 860, 918
HspAI	GCGC	3 cut(s)	187, 320, 890
Ksp22I	TGATCA	4 cut(s)	31, 384, 411, 511
Kzo9I	GATC	5 cut(s)	14, 31, 384, 411, 511
Lsp1109I	GCAGC	4 cut(s)	664, 676, 679, 829
LweI	GCATC	4 cut(s)	494, 565, 627, 646
MaeI	CTAG	1 cut(s)	665
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	5 cut(s)	119, 259, 365, 697, 770
MalI	GATC	5 cut(s)	16, 33, 386, 413, 513
MbiI	CCGCTC	1 cut(s)	311
MboI	GATC	5 cut(s)	14, 31, 384, 411, 511
MboII	GAAGA	3 cut(s)	157, 160, 294
MfeI	CAATTG	1 cut(s)	180
MhlI	GDGCHC	2 cut(s)	96, 572
MluCI	AATT	3 cut(s)	66, 180, 211
MlyI	GAGTC	2 cut(s)	355, 528
MmeI	TCCRAC	1 cut(s)	529
MnlI	CCTC	7 cut(s)	122, 264, 447, 454, 635, 748, 814
MseI	TTAA	3 cut(s)	65, 99, 336
MslI	CAYNNNNRTG	3 cut(s)	237, 268, 913
MspA1I	CMGCKG	1 cut(s)	751
MspI	CCGG	6 cut(s)	144, 429, 681, 717, 800, 810
MunI	CAATTG	1 cut(s)	180
MvaI	CCWGG	7 cut(s)	83, 108, 268, 374, 615, 732, 745
MvnI	CGCG	1 cut(s)	830
MwoI	GCNNNNNNNGC	5 cut(s)	317, 656, 686, 851, 889
NciI	CCSGG	4 cut(s)	430, 800, 801, 810
NdeII	GATC	5 cut(s)	14, 31, 384, 411, 511
NlaIII	CATG	4 cut(s)	236, 598, 860, 918
NlaIV	GGNNCC	4 cut(s)	112, 244, 736, 923
NmuCI	GTSAC	1 cut(s)	697
PagI	TCATGA	1 cut(s)	594
PasI	CCCWGGG	1 cut(s)	373
PcsI	WCGNNNNNNNCGW	2 cut(s)	555, 570
PfeI	GAWTC	3 cut(s)	229, 805, 898
PflFI	GACNNNGTC	1 cut(s)	278
PflMI	CCANNNNNTGG	1 cut(s)	744
PkrI	GCNGC	5 cut(s)	679, 691, 694, 750, 844
PleI	GAGTC	2 cut(s)	354, 527
PpsI	GAGTC	2 cut(s)	354, 527
PpuMI	RGGWCCY	1 cut(s)	734
Psp5II	RGGWCCY	1 cut(s)	734
Psp6I	CCWGG	7 cut(s)	81, 106, 266, 372, 613, 730, 743
PspGI	CCWGG	7 cut(s)	81, 106, 266, 372, 613, 730, 743
PspN4I	GGNNCC	4 cut(s)	112, 244, 736, 923
PspPI	GGNCC	3 cut(s)	588, 734, 921
PspPPI	RGGWCCY	1 cut(s)	734
PstNI	CAGNNNCTG	1 cut(s)	842
PsyI	GACNNNGTC	1 cut(s)	278
RseI	CAYNNNNRTG	3 cut(s)	237, 268, 913
SaqAI	TTAA	3 cut(s)	65, 99, 336
SatI	GCNGC	5 cut(s)	678, 690, 693, 749, 843
Sau3AI	GATC	5 cut(s)	14, 31, 384, 411, 511
Sau96I	GGNCC	3 cut(s)	588, 734, 921
SchI	GAGTC	2 cut(s)	355, 528
SduI	GDGCHC	2 cut(s)	96, 572
SfaNI	GCATC	4 cut(s)	494, 565, 627, 646
SinI	GGWCC	2 cut(s)	734, 921
SmaI	CCCGGG	1 cut(s)	801
SmiMI	CAYNNNNRTG	3 cut(s)	237, 268, 913
Sse9I	AATT	3 cut(s)	66, 180, 211
SsiI	CCGC	7 cut(s)	309, 426, 479, 632, 648, 749, 789
SspMI	CTAG	1 cut(s)	665
TaaI	ACNGT	2 cut(s)	766, 776
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	5 cut(s)	153, 282, 407, 564, 654
TasI	AATT	3 cut(s)	66, 180, 211
TauI	GCSGC	1 cut(s)	751
TfiI	GAWTC	3 cut(s)	229, 805, 898
Tru1I	TTAA	3 cut(s)	65, 99, 336
Tru9I	TTAA	3 cut(s)	65, 99, 336
TscAI	CASTG	1 cut(s)	769
TseFI	GTSAC	1 cut(s)	697
TseI	GCWGC	4 cut(s)	677, 689, 692, 842
Tsp45I	GTSAC	1 cut(s)	697
TspDTI	ATGAA	6 cut(s)	14, 205, 388, 583, 611, 887
TspGWI	ACGGA	2 cut(s)	286, 531
TspMI	CCCGGG	1 cut(s)	799
TspRI	CASTG	1 cut(s)	769
Tth111I	GACNNNGTC	1 cut(s)	278
Van91I	CCANNNNNTGG	1 cut(s)	744
VpaK11BI	GGWCC	2 cut(s)	734, 921
XagI	CCTNNNNNAGG	1 cut(s)	377
XapI	RAATTY	1 cut(s)	211
XmaI	CCCGGG	1 cut(s)	799
XspI	CTAG	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.