Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8495263.1

Orthogroup ID

OG0005922

Physical Location & Seq

Genomic Coordinates Reverse (-)

1329 .. 2477

Gene Structure 1149 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8495263.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atggtttttcgtgttgcagtagcaactcaggctctcttgctaatcctcctcctcactacgcctcacttcgtattgggaggcaagaaaggaggaggcggaggcaagaaaggaggaggcggtaagggtggggctaaaaaaccatcggcaccttatagagcacctaagaatggtggaggcggggccaagaataaaccatcgaaaccagcaacaccttatagaccacctgtagtacccgagcccaaaaaaccagtggcagcttctacacctctgccggaagctgtggccaccattgaagtgcctagaccagggacactatcgagaggtcccgcctgtaagggcaacggtgagggtatcatatacaagggaggccctctcctgaccggggagctcaacctttccatcatattttacggccaatggcagagccaacacaaggatctgatcaggagtttcctcagttcgttggcggtgccgggctcgaccgcgaaccagtggtgggccattgtggaaagttaccagactgtggccaatatgcccaaccaaggcgtccatatcaaagtgggcactcagtcgagcgatgataaggcctccttgggcaaagttttgaccaaagactttatcaagcagcttgtgcagagggccaagagcggcaaccccaacactctcgctgtcatcttcgctcacaaagatgtcgcagttgcagacctgtgcaggggcaaatgctacgagcatggagcgtttgataacatgccctatctcattgtcggaaaccccgaagttgagtgccctggttcttgtgccattcccttcgcaaaggccagctacggtcctgcaggcgacaccgtcaaaccaccaaacggcgaccttggcgttgatgctaccatcatcaactttgcctccggcttggcttccgtagtcactaacccatccaacggcggattttccaaaccaggacccaaaacctgggcgattgaggctggcaacgcctgcgaggatatgttcggaagcggagcaggccccggccaacccggaaagatgacaatcgacgcagccggttgtggctacaatgccgttggagatgggggtgccagattcttgcttccagcaatttgggatccaaagtcgtccacatgctggacccctatgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Phi_1

Protein Analysis

382

Amino Acids

39.39

Weight (kDa)

9.37

Isoelectric Point (pI)

31.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005922)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g52250 FvH4_7g34090 FvH4_7g34100
malus_domestica	MD01G1237200.v1.1 MD07G1309800.v1.1
prunus_persica	Prupe.2G327500_v2.0.a1
pyrus_communis	pycom03g08340 pycom07g28180
rosa_chinensis	RchiOBHm_Chr1g0384371 RchiOBHm_Chr1g0384381
rosa_laevigata	RLG00000026043 RLG00000026044
rosa_multiflora	Rmu_co8495263.1_g000001 Rmu_sc0016737.1_g000008
rosa_roxburghii	Rroxscaffold_4G00276720 Rroxscaffold_4G00276730
rosa_rugosa	Rorug01G0447300 Rorug01G0447300
rosa_samantha	Rh1AG472500 Rh1AG472600 Rh1BG430300 Rh1BG430400 Rh1CG443300 Rh1CG443400 Rh1DG462900 Rh1DG463000
rosa_wichuraiana	Rw1G039990 Rw1G040000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	145, 469, 1085
AccB7I	CCANNNNNTGG	3 cut(s)	523, 963, 1134
AccBSI	CCGCTC	1 cut(s)	648
AccII	CGCG	1 cut(s)	485
AciI	CCGC	9 cut(s)	96, 117, 177, 327, 467, 483, 648, 936, 1008
AclWI	GGATC	3 cut(s)	444, 1109, 1122
AcoI	YGGCCR	4 cut(s)	282, 412, 525, 1021
AcyI	GRCGYC	1 cut(s)	546
AfaI	GTAC	1 cut(s)	231
AgsI	TTSAA	1 cut(s)	293
AjnI	CCWGG	4 cut(s)	304, 787, 949, 962
AluBI	AGCT	5 cut(s)	257, 278, 388, 628, 822
AluI	AGCT	5 cut(s)	257, 278, 388, 628, 822
Alw21I	GWGCWC	2 cut(s)	160, 390
AlwI	GGATC	3 cut(s)	444, 1109, 1122
Ama87I	CYCGRG	1 cut(s)	233
ApeKI	GCWGC	3 cut(s)	254, 625, 1049
AspS9I	GGNCC	9 cut(s)	180, 323, 368, 498, 639, 827, 953, 1016, 1137
AsuC2I	CCSGG	4 cut(s)	382, 474, 1020, 1029
AsuHPI	GGTGA	1 cut(s)	356
AvaI	CYCGRG	1 cut(s)	233
AvaII	GGWCC	4 cut(s)	323, 827, 953, 1137
BaeGI	GKGCMC	2 cut(s)	566, 788
BalI	TGGCCA	2 cut(s)	284, 527
BamHI	GGATCC	1 cut(s)	1114
BanI	GGYRCC	3 cut(s)	145, 469, 1085
BanII	GRGCYC	3 cut(s)	240, 390, 479
Bbv12I	GWGCWC	2 cut(s)	160, 390
BbvI	GCAGC	3 cut(s)	266, 637, 1061
BccI	CCATC	6 cut(s)	148, 202, 407, 890, 934, 1073
BceAI	ACGGC	4 cut(s)	427, 874, 949, 1055
BciT130I	CCWGG	4 cut(s)	306, 789, 951, 964
BclI	TGATCA	1 cut(s)	441
BcnI	CCSGG	4 cut(s)	382, 474, 1020, 1029
BfaI	CTAG	1 cut(s)	300
BfmI	CTRYAG	2 cut(s)	225, 831
BisI	GCNGC	4 cut(s)	255, 626, 649, 1050
BlsI	GCNGC	4 cut(s)	256, 627, 650, 1051
Bme1390I	CCNGG	8 cut(s)	306, 382, 474, 789, 951, 964, 1020, 1029
Bme18I	GGWCC	4 cut(s)	323, 827, 953, 1137
BmeT110I	CYCGRG	1 cut(s)	233
BmgT120I	GGNCC	9 cut(s)	180, 323, 368, 498, 639, 827, 953, 1016, 1137
BmiI	GGNNCC	9 cut(s)	147, 181, 325, 471, 955, 1018, 1087, 1116, 1139
BmrFI	CCNGG	8 cut(s)	306, 382, 474, 789, 951, 964, 1020, 1029
BmsI	GCATC	1 cut(s)	865
BplI	GAGNNNNNCTC	2 cut(s)	357, 389
BpuMI	CCSGG	4 cut(s)	382, 474, 1020, 1029
BsaBI	GATNNNNATC	1 cut(s)	1040
BsaHI	GRCGYC	1 cut(s)	546
BsaJI	CCNNGG	8 cut(s)	305, 381, 541, 591, 787, 865, 963, 1018
BsaXI	ACNNNNNCTCC	2 cut(s)	881, 911
Bse118I	RCCGGY	1 cut(s)	1052
Bse1I	ACTGG	2 cut(s)	248, 490
Bse8I	GATNNNNATC	1 cut(s)	1040
BseBI	CCWGG	4 cut(s)	306, 789, 951, 964
BseDI	CCNNGG	8 cut(s)	305, 381, 541, 591, 787, 865, 963, 1018
BseGI	GGATG	1 cut(s)	926
BseJI	GATNNNNATC	1 cut(s)	1040
BseMII	CTCAG	3 cut(s)	41, 469, 581
BseNI	ACTGG	2 cut(s)	248, 490
BseRI	GAGGAG	4 cut(s)	38, 41, 105, 126
BseSI	GKGCMC	2 cut(s)	566, 788
BseXI	GCAGC	3 cut(s)	266, 637, 1061
BsgI	GTGCAG	2 cut(s)	653, 730
Bsh1236I	CGCG	1 cut(s)	485
Bsh1285I	CGRYCG	1 cut(s)	483
BshNI	GGYRCC	3 cut(s)	145, 469, 1085
BsiEI	CGRYCG	1 cut(s)	483
BsiHKAI	GWGCWC	2 cut(s)	160, 390
BsiHKCI	CYCGRG	1 cut(s)	233
BsiSI	CCGG	7 cut(s)	272, 381, 473, 900, 1020, 1029, 1053
BslFI	GGGAC	2 cut(s)	309, 322
BsmFI	GGGAC	2 cut(s)	309, 322
BsoBI	CYCGRG	1 cut(s)	233
Bsp1286I	GDGCHC	6 cut(s)	160, 240, 390, 479, 566, 788
Bsp143I	GATC	3 cut(s)	436, 441, 1114
BspACI	CCGC	9 cut(s)	96, 117, 177, 327, 467, 483, 648, 936, 1008
BspCNI	CTCAG	3 cut(s)	40, 468, 580
BspFNI	CGCG	1 cut(s)	485
BspLI	GGNNCC	9 cut(s)	147, 181, 325, 471, 955, 1018, 1087, 1116, 1139
BspMAI	CTGCAG	1 cut(s)	835
BspPI	GGATC	3 cut(s)	444, 1109, 1122
BspT107I	GGYRCC	3 cut(s)	145, 469, 1085
BsrBI	CCGCTC	1 cut(s)	648
BsrFI	RCCGGY	1 cut(s)	1052
BsrI	ACTGG	2 cut(s)	248, 490
BssAI	RCCGGY	1 cut(s)	1052
BssECI	CCNNGG	8 cut(s)	305, 381, 541, 591, 787, 865, 963, 1018
BssMI	GATC	3 cut(s)	436, 441, 1114
BssNI	GRCGYC	1 cut(s)	546
BssT1I	CCWWGG	3 cut(s)	541, 591, 865
Bst2UI	CCWGG	4 cut(s)	306, 789, 951, 964
Bst4CI	ACNGT	4 cut(s)	344, 523, 827, 844
BstACI	GRCGYC	1 cut(s)	546
BstAPI	GCANNNNNTGC	2 cut(s)	631, 987
BstC8I	GCNNGC	5 cut(s)	820, 835, 979, 988, 1015
BstDEI	CTNAG	4 cut(s)	27, 162, 455, 567
BstENI	CCTNNNNNAGG	1 cut(s)	303
BstF5I	GGATG	1 cut(s)	926
BstFNI	CGCG	1 cut(s)	485
BstKTI	GATC	3 cut(s)	439, 444, 1117
BstMBI	GATC	3 cut(s)	436, 441, 1114
BstMCI	CGRYCG	1 cut(s)	483
BstMWI	GCNNNNNNNGC	7 cut(s)	29, 631, 867, 974, 983, 987, 1014
BstNI	CCWGG	4 cut(s)	306, 789, 951, 964
BstNSI	RCATGY	2 cut(s)	751, 1134
BstSCI	CCNGG	8 cut(s)	304, 380, 472, 787, 949, 962, 1018, 1027
BstSFI	CTRYAG	2 cut(s)	225, 831
BstSLI	GKGCMC	2 cut(s)	566, 788
BstUI	CGCG	1 cut(s)	485
BstV1I	GCAGC	3 cut(s)	266, 637, 1061
BstX2I	RGATCY	2 cut(s)	436, 1114
BstXI	CCANNNNNNTGG	1 cut(s)	1110
BstYI	RGATCY	2 cut(s)	436, 1114
BtgZI	GCGATG	1 cut(s)	591
BtsCI	GGATG	1 cut(s)	926
BtsIMutI	CAGTG	2 cut(s)	255, 497
Cac8I	GCNNGC	5 cut(s)	820, 835, 979, 988, 1015
Cfr10I	RCCGGY	1 cut(s)	1052
Cfr13I	GGNCC	9 cut(s)	180, 323, 368, 498, 639, 827, 953, 1016, 1137
CseI	GACGC	2 cut(s)	535, 1055
Csp6I	GTAC	1 cut(s)	230
CviAII	CATG	3 cut(s)	731, 748, 1131
CviQI	GTAC	1 cut(s)	230
DdeI	CTNAG	4 cut(s)	27, 162, 455, 567
DpnI	GATC	3 cut(s)	438, 443, 1116
DpnII	GATC	3 cut(s)	436, 441, 1114
EaeI	YGGCCR	4 cut(s)	282, 412, 525, 1021
EciI	GGCGGA	2 cut(s)	111, 951
Ecl136II	GAGCTC	1 cut(s)	388
Eco130I	CCWWGG	3 cut(s)	541, 591, 865
Eco147I	AGGCCT	1 cut(s)	587
Eco24I	GRGCYC	3 cut(s)	240, 390, 479
Eco47I	GGWCC	4 cut(s)	323, 827, 953, 1137
Eco53kI	GAGCTC	1 cut(s)	388
Eco88I	CYCGRG	1 cut(s)	233
EcoICRI	GAGCTC	1 cut(s)	388
EcoNI	CCTNNNNNAGG	1 cut(s)	303
EcoO109I	RGGNCCY	4 cut(s)	323, 368, 953, 1016
EcoRII	CCWGG	4 cut(s)	304, 787, 949, 962
EcoT14I	CCWWGG	3 cut(s)	541, 591, 865
EcoT38I	GRGCYC	3 cut(s)	240, 390, 479
ErhI	CCWWGG	3 cut(s)	541, 591, 865
FaeI	CATG	3 cut(s)	734, 751, 1134
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FaqI	GGGAC	2 cut(s)	309, 322
FatI	CATG	3 cut(s)	730, 747, 1130
FauI	CCCGC	2 cut(s)	170, 334
FbaI	TGATCA	1 cut(s)	441
Fnu4HI	GCNGC	4 cut(s)	255, 626, 649, 1050
FokI	GGATG	1 cut(s)	913
FriOI	GRGCYC	3 cut(s)	240, 390, 479
Fsp4HI	GCNGC	4 cut(s)	255, 626, 649, 1050
FspBI	CTAG	1 cut(s)	300
GluI	GCNGC	4 cut(s)	255, 626, 649, 1050
HapII	CCGG	7 cut(s)	272, 381, 473, 900, 1020, 1029, 1053
HgaI	GACGC	2 cut(s)	535, 1055
Hin1I	GRCGYC	1 cut(s)	546
Hin1II	CATG	3 cut(s)	734, 751, 1134
HinfI	GANTC	1 cut(s)	1092
HpaII	CCGG	7 cut(s)	272, 381, 473, 900, 1020, 1029, 1053
HphI	GGTGA	1 cut(s)	356
Hpy166II	GTNNAC	1 cut(s)	1128
Hpy188I	TCNGA	3 cut(s)	441, 767, 1004
Hpy188III	TCNNGA	3 cut(s)	318, 376, 445
Hpy8I	GTNNAC	1 cut(s)	1128
Hpy99I	CGWCG	1 cut(s)	1049
HpyAV	CCTTC	1 cut(s)	817
HpyCH4III	ACNGT	4 cut(s)	344, 523, 827, 844
HpyCH4V	TGCA	5 cut(s)	17, 634, 701, 711, 833
HpyF10VI	GCNNNNNNNGC	7 cut(s)	29, 631, 867, 974, 983, 987, 1014
HpyF3I	CTNAG	4 cut(s)	27, 162, 455, 567
Hsp92I	GRCGYC	1 cut(s)	546
Hsp92II	CATG	3 cut(s)	734, 751, 1134
Ksp22I	TGATCA	1 cut(s)	441
Kzo9I	GATC	3 cut(s)	436, 441, 1114
LmnI	GCTCC	3 cut(s)	385, 734, 1010
Lsp1109I	GCAGC	3 cut(s)	266, 637, 1061
LweI	GCATC	1 cut(s)	865
MaeI	CTAG	1 cut(s)	300
MaeIII	GTNAC	2 cut(s)	512, 916
MalI	GATC	3 cut(s)	438, 443, 1116
MbiI	CCGCTC	1 cut(s)	648
MboI	GATC	3 cut(s)	436, 441, 1114
MboII	GAAGA	1 cut(s)	667
MflI	RGATCY	2 cut(s)	436, 1114
MhlI	GDGCHC	6 cut(s)	160, 240, 390, 479, 566, 788
MlsI	TGGCCA	2 cut(s)	284, 527
MluCI	AATT	1 cut(s)	1107
MluNI	TGGCCA	2 cut(s)	284, 527
MmeI	TCCRAC	3 cut(s)	745, 954, 1054
Mox20I	TGGCCA	2 cut(s)	284, 527
MscI	TGGCCA	2 cut(s)	284, 527
MslI	CAYNNNNRTG	2 cut(s)	293, 687
Msp20I	TGGCCA	2 cut(s)	284, 527
MspI	CCGG	7 cut(s)	272, 381, 473, 900, 1020, 1029, 1053
MspR9I	CCNGG	8 cut(s)	306, 382, 474, 789, 951, 964, 1020, 1029
MvaI	CCWGG	4 cut(s)	306, 789, 951, 964
MvnI	CGCG	1 cut(s)	485
MwoI	GCNNNNNNNGC	7 cut(s)	29, 631, 867, 974, 983, 987, 1014
NciI	CCSGG	4 cut(s)	382, 474, 1020, 1029
NdeII	GATC	3 cut(s)	436, 441, 1114
NlaIII	CATG	3 cut(s)	734, 751, 1134
NlaIV	GGNNCC	9 cut(s)	147, 181, 325, 471, 955, 1018, 1087, 1116, 1139
NmuCI	GTSAC	1 cut(s)	916
NspI	RCATGY	2 cut(s)	751, 1134
PceI	AGGCCT	1 cut(s)	587
PcsI	WCGNNNNNNNCGW	1 cut(s)	771
PfeI	GAWTC	1 cut(s)	1092
PflFI	GACNNNGTC	1 cut(s)	842
PflMI	CCANNNNNTGG	3 cut(s)	523, 963, 1134
PkrI	GCNGC	4 cut(s)	256, 627, 650, 1051
PpuMI	RGGWCCY	2 cut(s)	323, 953
Psp124BI	GAGCTC	1 cut(s)	390
Psp5II	RGGWCCY	2 cut(s)	323, 953
Psp6I	CCWGG	4 cut(s)	304, 787, 949, 962
PspGI	CCWGG	4 cut(s)	304, 787, 949, 962
PspN4I	GGNNCC	9 cut(s)	147, 181, 325, 471, 955, 1018, 1087, 1116, 1139
PspPI	GGNCC	9 cut(s)	180, 323, 368, 498, 639, 827, 953, 1016, 1137
PspPPI	RGGWCCY	2 cut(s)	323, 953
PstI	CTGCAG	1 cut(s)	835
PsuI	RGATCY	2 cut(s)	436, 1114
PsyI	GACNNNGTC	1 cut(s)	842
RsaI	GTAC	1 cut(s)	231
RsaNI	GTAC	1 cut(s)	230
RseI	CAYNNNNRTG	2 cut(s)	293, 687
SacI	GAGCTC	1 cut(s)	390
SatI	GCNGC	4 cut(s)	255, 626, 649, 1050
Sau3AI	GATC	3 cut(s)	436, 441, 1114
Sau96I	GGNCC	9 cut(s)	180, 323, 368, 498, 639, 827, 953, 1016, 1137
SbfI	CCTGCAGG	1 cut(s)	835
ScrFI	CCNGG	8 cut(s)	306, 382, 474, 789, 951, 964, 1020, 1029
SdaI	CCTGCAGG	1 cut(s)	835
SduI	GDGCHC	6 cut(s)	160, 240, 390, 479, 566, 788
SfaNI	GCATC	1 cut(s)	865
SfcI	CTRYAG	2 cut(s)	225, 831
SinI	GGWCC	4 cut(s)	323, 827, 953, 1137
SmiMI	CAYNNNNRTG	2 cut(s)	293, 687
Sse8387I	CCTGCAGG	1 cut(s)	835
Sse9I	AATT	1 cut(s)	1107
SseBI	AGGCCT	1 cut(s)	587
SsiI	CCGC	9 cut(s)	96, 117, 177, 327, 467, 483, 648, 936, 1008
SspMI	CTAG	1 cut(s)	300
SstI	GAGCTC	1 cut(s)	390
StuI	AGGCCT	1 cut(s)	587
StyD4I	CCNGG	8 cut(s)	304, 380, 472, 787, 949, 962, 1018, 1027
StyI	CCWWGG	3 cut(s)	541, 591, 865
TaaI	ACNGT	4 cut(s)	344, 523, 827, 844
TaqI	TCGA	5 cut(s)	197, 317, 479, 572, 1044
TasI	AATT	1 cut(s)	1107
TauI	GCSGC	1 cut(s)	651
TfiI	GAWTC	1 cut(s)	1092
TscAI	CASTG	2 cut(s)	255, 497
TseFI	GTSAC	1 cut(s)	916
TseI	GCWGC	3 cut(s)	254, 625, 1049
Tsp45I	GTSAC	1 cut(s)	916
TspGWI	ACGGA	1 cut(s)	901
TspRI	CASTG	2 cut(s)	255, 497
Tth111I	GACNNNGTC	1 cut(s)	842
Van91I	CCANNNNNTGG	3 cut(s)	523, 963, 1134
VpaK11BI	GGWCC	4 cut(s)	323, 827, 953, 1137
XagI	CCTNNNNNAGG	1 cut(s)	303
XceI	RCATGY	2 cut(s)	751, 1134
XcmI	CCANNNNNNNNNTGG	1 cut(s)	247
XspI	CTAG	1 cut(s)	300

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.