Rh1CG443400

Phosphate-induced protein 1 conserved region

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0005922
Physical Location & Seq
Forward (+)
69579195 .. 69580009
815 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG443400.1

Sequence Viewer

Length: 465 bp
ATGGTCAAAAAGGCCACCGCCGGGAAGCCTCCTGCCTCTCTTGTCGTCATATTCACCGATAAGGAAAGTGCGGTCGCATCCCTTTGCAGGGGAAAATGCTATGATCACGGAGTCATAGATAACCAGCCCTATCTCATCGTCGGAAACCCCGAAGTCGAGTGCCCCGATGCTTGTGGCTGGCCCTTCATGAAGTCCAGCTACAATCCAGGCATCACCCTCACACCGCCAAACGGCAACCCCGCCGTCGATGCTATTCTCGTCAACTTTGCTGCCGGTTTGGCTGCTGCCGTCACCAATCCATTCAACACCGGATTTTCCAAACCAGGACCCAAAACCTGGCCGCTGGAGGCCAGCACTGTTTGTAACGGTATATTCGCAAGCGGGTCGTTCCCGGGGAATCCCGGCAAGGTGGCGGTGGACGCGAGAACAGAAAGAGATGCAAGACAAATTGACCTAGCCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Phi_1

Protein Analysis

154

Amino Acids

16.11

Weight (kDa)

7.59

Isoelectric Point (pI)

17.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Phi_1 PF04674 4 - 144 5.7e-39 Phosphate-induced protein 1 conserved region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 336
AccII CGCG 1 cut(s) 422
AciI CCGC 7 cut(s) 18, 71, 224, 240, 341, 381, 413
AcoI YGGCCR 1 cut(s) 338
AfiI CCNNNNNNNGG 5 cut(s) 21, 87, 88, 230, 336
AgsI TTSAA 1 cut(s) 304
AjnI CCWGG 3 cut(s) 205, 322, 335
AluBI AGCT 1 cut(s) 198
AluI AGCT 1 cut(s) 198
Ama87I CYCGRG 1 cut(s) 391
AoxI GGCC 4 cut(s) 12, 179, 338, 348
ApeKI GCWGC 3 cut(s) 269, 281, 284
AspS9I GGNCC 2 cut(s) 180, 326
AsuC2I CCSGG 4 cut(s) 22, 392, 393, 402
AsuHPI GGTGA 3 cut(s) 46, 205, 283
AvaI CYCGRG 1 cut(s) 391
AvaII GGWCC 1 cut(s) 326
BaeGI GKGCMC 1 cut(s) 164
BarI GAAGNNNNNNTAC 2 cut(s) 182, 214
BbvI GCAGC 3 cut(s) 256, 268, 271
BceAI ACGGC 3 cut(s) 227, 247, 272
BcgI CGANNNNNNTGC 2 cut(s) 366, 400
BciT130I CCWGG 3 cut(s) 207, 324, 337
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 4 cut(s) 22, 392, 393, 402
BfaI CTAG 1 cut(s) 455
BglI GCCNNNNNGGC 1 cut(s) 278
BisI GCNGC 4 cut(s) 270, 282, 285, 341
BlsI GCNGC 4 cut(s) 271, 283, 286, 342
Bme1390I CCNGG 7 cut(s) 22, 207, 324, 337, 392, 393, 402
Bme18I GGWCC 1 cut(s) 326
BmeT110I CYCGRG 1 cut(s) 391
BmgT120I GGNCC 2 cut(s) 180, 326
BmiI GGNNCC 1 cut(s) 328
BmrFI CCNGG 7 cut(s) 22, 207, 324, 337, 392, 393, 402
BmsI GCATC 5 cut(s) 86, 157, 219, 238, 427
BpmI CTGGAG 1 cut(s) 365
BpuMI CCSGG 4 cut(s) 22, 392, 393, 402
BsaJI CCNNGG 2 cut(s) 391, 392
BsaWI WCCGGW 1 cut(s) 308
Bsc4I CCNNNNNNNGG 5 cut(s) 21, 87, 88, 230, 336
Bse118I RCCGGY 1 cut(s) 272
BseBI CCWGG 3 cut(s) 207, 324, 337
BseDI CCNNGG 2 cut(s) 391, 392
BseGI GGATG 1 cut(s) 77
BseLI CCNNNNNNNGG 5 cut(s) 21, 87, 88, 230, 336
BseSI GKGCMC 1 cut(s) 164
BseXI GCAGC 3 cut(s) 256, 268, 271
Bsh1236I CGCG 1 cut(s) 422
Bsh1285I CGRYCG 1 cut(s) 75
BshFI GGCC 4 cut(s) 14, 181, 340, 350
BsiEI CGRYCG 1 cut(s) 75
BsiHKCI CYCGRG 1 cut(s) 391
BsiSI CCGG 5 cut(s) 21, 273, 309, 392, 402
BslI CCNNNNNNNGG 5 cut(s) 21, 87, 88, 230, 336
BsnI GGCC 4 cut(s) 14, 181, 340, 350
BsoBI CYCGRG 1 cut(s) 391
Bsp1286I GDGCHC 1 cut(s) 164
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 7 cut(s) 18, 71, 224, 240, 341, 381, 413
BspANI GGCC 4 cut(s) 14, 181, 340, 350
BspFNI CGCG 1 cut(s) 422
BspHI TCATGA 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 328
BsrFI RCCGGY 1 cut(s) 272
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 2 cut(s) 391, 392
BssMI GATC 1 cut(s) 103
Bst2UI CCWGG 3 cut(s) 207, 324, 337
Bst4CI ACNGT 2 cut(s) 358, 368
BstC8I GCNNGC 3 cut(s) 179, 352, 379
BstF5I GGATG 1 cut(s) 77
BstFNI CGCG 1 cut(s) 422
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstMCI CGRYCG 1 cut(s) 75
BstMWI GCNNNNNNNGC 3 cut(s) 248, 278, 419
BstNI CCWGG 3 cut(s) 207, 324, 337
BstSCI CCNGG 7 cut(s) 20, 205, 322, 335, 390, 391, 400
BstSLI GKGCMC 1 cut(s) 164
BstUI CGCG 1 cut(s) 422
BstV1I GCAGC 3 cut(s) 256, 268, 271
BsuRI GGCC 4 cut(s) 14, 181, 340, 350
BtsCI GGATG 1 cut(s) 77
BtsIMutI CAGTG 1 cut(s) 354
Cac8I GCNNGC 3 cut(s) 179, 352, 379
CciI TCATGA 1 cut(s) 186
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 180, 326
Cfr9I CCCGGG 1 cut(s) 391
CseI GACGC 1 cut(s) 428
CviAII CATG 1 cut(s) 187
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 338
Eco47I GGWCC 1 cut(s) 326
Eco88I CYCGRG 1 cut(s) 391
EcoO109I RGGNCCY 1 cut(s) 326
EcoRII CCWGG 3 cut(s) 205, 322, 335
FaeI CATG 1 cut(s) 190
FaiI YATR 5 cut(s) 50, 102, 116, 188, 371
FatI CATG 1 cut(s) 186
FauI CCCGC 2 cut(s) 247, 374
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 4 cut(s) 270, 282, 285, 341
FokI GGATG 1 cut(s) 64
Fsp4HI GCNGC 4 cut(s) 270, 282, 285, 341
FspBI CTAG 1 cut(s) 455
GluI GCNGC 4 cut(s) 270, 282, 285, 341
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 4 cut(s) 14, 181, 340, 350
HapII CCGG 5 cut(s) 21, 273, 309, 392, 402
HgaI GACGC 1 cut(s) 428
Hin1II CATG 1 cut(s) 190
HincII GTYRAC 1 cut(s) 262
HindII GTYRAC 1 cut(s) 262
HinfI GANTC 2 cut(s) 111, 397
HpaII CCGG 5 cut(s) 21, 273, 309, 392, 402
HphI GGTGA 3 cut(s) 46, 205, 283
Hpy166II GTNNAC 2 cut(s) 262, 418
Hpy188I TCNGA 1 cut(s) 143
Hpy188III TCNNGA 1 cut(s) 187
Hpy8I GTNNAC 2 cut(s) 262, 418
Hpy99I CGWCG 2 cut(s) 143, 248
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 2 cut(s) 358, 368
HpyCH4V TGCA 2 cut(s) 87, 440
HpyF10VI GCNNNNNNNGC 3 cut(s) 248, 278, 419
Hsp92II CATG 1 cut(s) 190
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 1 cut(s) 103
Lsp1109I GCAGC 3 cut(s) 256, 268, 271
LweI GCATC 5 cut(s) 86, 157, 219, 238, 427
MaeI CTAG 1 cut(s) 455
MaeIII GTNAC 2 cut(s) 289, 362
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MhlI GDGCHC 1 cut(s) 164
MluCI AATT 1 cut(s) 447
MlyI GAGTC 1 cut(s) 120
MmeI TCCRAC 1 cut(s) 121
MnlI CCTC 4 cut(s) 39, 46, 227, 340
MspA1I CMGCKG 1 cut(s) 343
MspI CCGG 5 cut(s) 21, 273, 309, 392, 402
MspR9I CCNGG 7 cut(s) 22, 207, 324, 337, 392, 393, 402
MvaI CCWGG 3 cut(s) 207, 324, 337
MvnI CGCG 1 cut(s) 422
MwoI GCNNNNNNNGC 3 cut(s) 248, 278, 419
NciI CCSGG 4 cut(s) 22, 392, 393, 402
NdeII GATC 1 cut(s) 103
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 328
NmuCI GTSAC 1 cut(s) 289
PagI TCATGA 1 cut(s) 186
PcsI WCGNNNNNNNCGW 2 cut(s) 147, 162
PfeI GAWTC 1 cut(s) 397
PflMI CCANNNNNTGG 1 cut(s) 336
PkrI GCNGC 4 cut(s) 271, 283, 286, 342
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PpuMI RGGWCCY 1 cut(s) 326
Psp5II RGGWCCY 1 cut(s) 326
Psp6I CCWGG 3 cut(s) 205, 322, 335
PspGI CCWGG 3 cut(s) 205, 322, 335
PspN4I GGNNCC 1 cut(s) 328
PspPI GGNCC 2 cut(s) 180, 326
PspPPI RGGWCCY 1 cut(s) 326
SatI GCNGC 4 cut(s) 270, 282, 285, 341
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 2 cut(s) 180, 326
SchI GAGTC 1 cut(s) 120
ScrFI CCNGG 7 cut(s) 22, 207, 324, 337, 392, 393, 402
SduI GDGCHC 1 cut(s) 164
SetI ASST 4 cut(s) 200, 338, 411, 456
SfaNI GCATC 5 cut(s) 86, 157, 219, 238, 427
SinI GGWCC 1 cut(s) 326
SmaI CCCGGG 1 cut(s) 393
Sse9I AATT 1 cut(s) 447
SsiI CCGC 7 cut(s) 18, 71, 224, 240, 341, 381, 413
SspMI CTAG 1 cut(s) 455
StyD4I CCNGG 7 cut(s) 20, 205, 322, 335, 390, 391, 400
TaaI ACNGT 2 cut(s) 358, 368
TaqI TCGA 2 cut(s) 156, 246
TasI AATT 1 cut(s) 447
TauI GCSGC 1 cut(s) 343
TfiI GAWTC 1 cut(s) 397
TscAI CASTG 1 cut(s) 361
TseFI GTSAC 1 cut(s) 289
TseI GCWGC 3 cut(s) 269, 281, 284
Tsp45I GTSAC 1 cut(s) 289
TspDTI ATGAA 2 cut(s) 175, 203
TspGWI ACGGA 1 cut(s) 123
TspMI CCCGGG 1 cut(s) 391
TspRI CASTG 1 cut(s) 361
Van91I CCANNNNNTGG 1 cut(s) 336
VpaK11BI GGWCC 1 cut(s) 326
XmaI CCCGGG 1 cut(s) 391
XspI CTAG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.